[quant] fragment length distribution will be estimated from the data
[index] k-mer length: 31
[index] number of targets: 194,360
[index] number of k-mers: 112,035,259
[quant] running in paired-end mode
[quant] will process pair 1: aih-tih-sc-20b7e4-R1_B23WHYVLT4_1_1.fastp.fastq.gz
aih-tih-sc-20b7e4-R1_B23WHYVLT4_1_2.fastp.fastq.gz
[quant] finding pseudoalignments for the reads ...
[progress] 1M reads processed (96.6% mapped)
[progress] 2M reads processed (96.5% mapped)
[progress] 3M reads processed (96.5% mapped)
[progress] 4M reads processed (96.5% mapped)
[progress] 5M reads processed (96.5% mapped)
[progress] 6M reads processed (96.5% mapped)
[progress] 7M reads processed (96.5% mapped)
[progress] 8M reads processed (96.5% mapped)
[progress] 9M reads processed (96.5% mapped)
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[progress] 12M reads processed (96.5% mapped)
[progress] 13M reads processed (96.5% mapped)
[progress] 14M reads processed (96.5% mapped)
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[progress] 16M reads processed (96.5% mapped)
[progress] 17M reads processed (96.5% mapped)
[progress] 18M reads processed (96.5% mapped)
[progress] 19M reads processed (96.5% mapped)
[progress] 20M reads processed (96.5% mapped)
[progress] 21M reads processed (96.5% mapped)
[progress] 22M reads processed (96.5% mapped)
[progress] 23M reads processed (96.5% mapped)
[progress] 24M reads processed (96.5% mapped)
[progress] 25M reads processed (96.5% mapped)
[progress] 26M reads processed (96.5% mapped)
[progress] 27M reads processed (96.5% mapped)
[progress] 28M reads processed (96.5% mapped)
[progress] 29M reads processed (96.5% mapped)
[progress] 30M reads processed (96.5% mapped)
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[progress] 36M reads processed (96.5% mapped)
[progress] 37M reads processed (96.5% mapped)
[progress] 38M reads processed (96.5% mapped)
[progress] 39M reads processed (96.5% mapped)
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[progress] 41M reads processed (96.5% mapped)
[progress] 42M reads processed (96.5% mapped)
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[progress] 50M reads processed (96.5% mapped)
[progress] 51M reads processed (96.5% mapped)
[progress] 52M reads processed (96.5% mapped)
[progress] 53M reads processed (96.5% mapped)
[progress] 54M reads processed (96.5% mapped)
[progress] 55M reads processed (96.5% mapped)
[progress] 56M reads processed (96.5% mapped)
[progress] 57M reads processed (96.5% mapped)
[progress] 58M reads processed (96.5% mapped)
[progress] 59M reads processed (96.5% mapped)
[progress] 60M reads processed (96.5% mapped)
[progress] 61M reads processed (96.5% mapped)
[progress] 62M reads processed (96.5% mapped)
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[progress] 64M reads processed (96.5% mapped)
[progress] 65M reads processed (96.5% mapped)
[progress] 66M reads processed (96.5% mapped)
[progress] 67M reads processed (96.5% mapped)
[progress] 68M reads processed (96.5% mapped)
[progress] 69M reads processed (96.5% mapped)
[progress] 70M reads processed (96.5% mapped)
[progress] 71M reads processed (96.5% mapped)
[progress] 72M reads processed (96.5% mapped)
[progress] 73M reads processed (96.5% mapped)
[progress] 74M reads processed (96.5% mapped)
[progress] 75M reads processed (96.5% mapped)
[progress] 76M reads processed (96.5% mapped)
[progress] 77M reads processed (96.5% mapped)
[progress] 78M reads processed (96.5% mapped)
[progress] 79M reads processed (96.5% mapped)
[progress] 80M reads processed (96.5% mapped)
[progress] 81M reads processed (96.5% mapped)
[progress] 82M reads processed (96.5% mapped)
[progress] 83M reads processed (96.5% mapped)
[progress] 84M reads processed (96.5% mapped)
[progress] 85M reads processed (96.5% mapped)
[progress] 86M reads processed (96.5% mapped)
[progress] 87M reads processed (96.5% mapped)
[progress] 88M reads processed (96.5% mapped)
[progress] 89M reads processed (96.5% mapped)
[progress] 90M reads processed (96.5% mapped)
[progress] 91M reads processed (96.5% mapped)
[progress] 92M reads processed (96.5% mapped)
[progress] 93M reads processed (96.5% mapped)
[progress] 94M reads processed (96.5% mapped)
[progress] 95M reads processed (96.5% mapped)
[progress] 96M reads processed (96.5% mapped)
[progress] 97M reads processed (96.5% mapped)
[progress] 98M reads processed (96.5% mapped)
[progress] 99M reads processed (96.5% mapped)
[progress] 101M reads processed (96.5% mapped)
[progress] 102M reads processed (96.5% mapped)
[progress] 103M reads processed (96.5% mapped)
[progress] 104M reads processed (96.5% mapped)
[progress] 105M reads processed (96.5% mapped)
[progress] 106M reads processed (96.5% mapped)
[progress] 107M reads processed (96.5% mapped)
[progress] 108M reads processed (96.5% mapped)
[progress] 109M reads processed (96.5% mapped)
[progress] 110M reads processed (96.5% mapped)
[progress] 111M reads processed (96.5% mapped) done
[quant] processed 111,078,145 reads, 107,227,528 reads pseudoaligned
[quant] estimated average fragment length: 112.6
[ em] quantifying the abundances ... done
[ em] the Expectation-Maximization algorithm ran for 1,490 rounds