Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/013786bf60e48795a82bf865049234/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/464773a255fe64d03666646e2a0ea3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/9974715b26386cbe22e03d563a248d/aih-tih-sc-16054b-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/464773a255fe64d03666646e2a0ea3/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/e3f8fc649ff395e795586b9719e337/aih-tih-sc-16054b-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 360185268
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-16054b-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	360185268
Known Splicing Events:	357554985
Partial Novel Splicing Events:	1639780
Novel Splicing Events:	902993
Filtered Splicing Events:	87510

Total splicing  Junctions:	558386
Known Splicing Junctions:	279340
Partial Novel Splicing Junctions:	160458
Novel Splicing Junctions:	118588

===================================================================
Create BED file ...
Create Interact file ...