File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/3d421dc9d16713ef9ad66c8fbd1a55/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (aih-tih-sc-3376ed-R1_B23WHYVLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/72436ebb9ac2c7d604654cd976f2b9/aih-tih-sc-3376ed-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/8c2e919eb2e47b1c24dc5ddb3863d8/aih-tih-sc-3376ed-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/013786bf60e48795a82bf865049234/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/3d421dc9d16713ef9ad66c8fbd1a55/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/3d421dc9d16713ef9ad66c8fbd1a55/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 361330019
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-3376ed-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	361330019
Known Splicing Events:	358348575
Partial Novel Splicing Events:	1843749
Novel Splicing Events:	1010891
Filtered Splicing Events:	126804

Total splicing  Junctions:	602087
Known Splicing Junctions:	275352
Partial Novel Splicing Junctions:	169540
Novel Splicing Junctions:	157195

===================================================================
Create BED file ...
Create Interact file ...