File Info

Filename
samplesheet.csv
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/cd71b62cfc6381206b8f504332e76a/samplesheet.csv
Size
28.4 KB
Task
NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:SAMPLESHEET_FROM_MERGED (samplesheet)
Attempt

Content

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sample,sample_type,fastq_1,fastq_2,strandedness
FFPE_HD789_01_RNA_13_B23WHYVLT4_1,POSITIVE_CONTROL ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/bf2c3121ae9e4e351d563de4777f8b/FFPE_HD789_01_RNA_13_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/bf2c3121ae9e4e351d563de4777f8b/FFPE_HD789_01_RNA_13_B23WHYVLT4_1_R2.fastq.gz,reverse
FFPE_V4_0002_RNA_0001_B23WHYVLT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/05/ea413467cdbd00bccb1a131d4a1707/FFPE_V4_0002_RNA_0001_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/05/ea413467cdbd00bccb1a131d4a1707/FFPE_V4_0002_RNA_0001_B23WHYVLT4_1_R2.fastq.gz,reverse
NTC_0001_0001_B23WHYVLT4_1,NEGATIVE_CONTROL ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/64/f57e07ffc260fab2020099404b5a6c/NTC_0001_0001_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/64/f57e07ffc260fab2020099404b5a6c/NTC_0001_0001_B23WHYVLT4_1_R2.fastq.gz,reverse
aih-tih-sc-0183f6-R1_B23WHYVLT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/367e1873e6d10fc2fafbca29e8c682/aih-tih-sc-0183f6-R1_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/367e1873e6d10fc2fafbca29e8c682/aih-tih-sc-0183f6-R1_B23WHYVLT4_1_R2.fastq.gz,reverse
aih-tih-sc-027d27-R1_B23WHYVLT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/2812c9f66805a3218e8250588e66ba/aih-tih-sc-027d27-R1_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/2812c9f66805a3218e8250588e66ba/aih-tih-sc-027d27-R1_B23WHYVLT4_1_R2.fastq.gz,reverse
aih-tih-sc-03bdd8-R1_B23WHYVLT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/89/4fe0e1369f5fa22e84278d46387562/aih-tih-sc-03bdd8-R1_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/89/4fe0e1369f5fa22e84278d46387562/aih-tih-sc-03bdd8-R1_B23WHYVLT4_1_R2.fastq.gz,reverse
aih-tih-sc-070e1d-R1_B23WHYVLT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/2037f5880fd82ea021f135b2dbc530/aih-tih-sc-070e1d-R1_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/2037f5880fd82ea021f135b2dbc530/aih-tih-sc-070e1d-R1_B23WHYVLT4_1_R2.fastq.gz,reverse
aih-tih-sc-099ac4-R1_B23WHYVLT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/f85bde005a541041481981cfb67534/aih-tih-sc-099ac4-R1_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/f85bde005a541041481981cfb67534/aih-tih-sc-099ac4-R1_B23WHYVLT4_1_R2.fastq.gz,reverse
aih-tih-sc-0a6b7b-R1_B23WHYVLT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/6c7acd9ae331e0364d76e8eca62f49/aih-tih-sc-0a6b7b-R1_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/6c7acd9ae331e0364d76e8eca62f49/aih-tih-sc-0a6b7b-R1_B23WHYVLT4_1_R2.fastq.gz,reverse
aih-tih-sc-0fc41c-R1_B23WHYVLT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/69/1fcd834976fa384adc5a2b1bb87116/aih-tih-sc-0fc41c-R1_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/69/1fcd834976fa384adc5a2b1bb87116/aih-tih-sc-0fc41c-R1_B23WHYVLT4_1_R2.fastq.gz,reverse
aih-tih-sc-13a2f6-R1_B23WHYVLT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/36c8660dcb50f0a14e78aead266831/aih-tih-sc-13a2f6-R1_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/36c8660dcb50f0a14e78aead266831/aih-tih-sc-13a2f6-R1_B23WHYVLT4_1_R2.fastq.gz,reverse
aih-tih-sc-16054b-R1_B23WHYVLT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/79/3c39cc43ee029d331642bb4f11ccb2/aih-tih-sc-16054b-R1_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/79/3c39cc43ee029d331642bb4f11ccb2/aih-tih-sc-16054b-R1_B23WHYVLT4_1_R2.fastq.gz,reverse
aih-tih-sc-176637-R1_B23WHYVLT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/14a2ee34add94b239e0f76fe2dba68/aih-tih-sc-176637-R1_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/14a2ee34add94b239e0f76fe2dba68/aih-tih-sc-176637-R1_B23WHYVLT4_1_R2.fastq.gz,reverse
aih-tih-sc-18a6f2-R1_B23WHYVLT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/72/79a2695b693fd0589eee48ef0ba310/aih-tih-sc-18a6f2-R1_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/72/79a2695b693fd0589eee48ef0ba310/aih-tih-sc-18a6f2-R1_B23WHYVLT4_1_R2.fastq.gz,reverse
aih-tih-sc-1ba302-R1_B23WHYVLT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/45/c24301c607ea8ffababd0bcca47cc8/aih-tih-sc-1ba302-R1_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/45/c24301c607ea8ffababd0bcca47cc8/aih-tih-sc-1ba302-R1_B23WHYVLT4_1_R2.fastq.gz,reverse
aih-tih-sc-1d89ab-R1_B23WHYVLT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/b735131a4a402efc97685011a592ce/aih-tih-sc-1d89ab-R1_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/b735131a4a402efc97685011a592ce/aih-tih-sc-1d89ab-R1_B23WHYVLT4_1_R2.fastq.gz,reverse
aih-tih-sc-1d9134-R1_B23WHYVLT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/00/b8026c847523507584a2219b83a964/aih-tih-sc-1d9134-R1_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/00/b8026c847523507584a2219b83a964/aih-tih-sc-1d9134-R1_B23WHYVLT4_1_R2.fastq.gz,reverse
aih-tih-sc-20b7e4-R1_B23WHYVLT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/3337a8d9cdf3304d0d1e6d20856f47/aih-tih-sc-20b7e4-R1_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/3337a8d9cdf3304d0d1e6d20856f47/aih-tih-sc-20b7e4-R1_B23WHYVLT4_1_R2.fastq.gz,reverse
aih-tih-sc-2a5468-R1_B23WHYVLT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/23160e45993ccf878a61d27e8ce505/aih-tih-sc-2a5468-R1_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/23160e45993ccf878a61d27e8ce505/aih-tih-sc-2a5468-R1_B23WHYVLT4_1_R2.fastq.gz,reverse
aih-tih-sc-2f84cc-R1_B23WHYVLT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/93/5d460e69ab5d1bb74082fc3e9f850f/aih-tih-sc-2f84cc-R1_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/93/5d460e69ab5d1bb74082fc3e9f850f/aih-tih-sc-2f84cc-R1_B23WHYVLT4_1_R2.fastq.gz,reverse
aih-tih-sc-3376ed-R1_B23WHYVLT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/e927694cf375c49e2c44bfd79a4618/aih-tih-sc-3376ed-R1_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/e927694cf375c49e2c44bfd79a4618/aih-tih-sc-3376ed-R1_B23WHYVLT4_1_R2.fastq.gz,reverse
aih-tih-sc-37dd87-R1_B23WHYVLT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/cf979a55e169157357100330b3002a/aih-tih-sc-37dd87-R1_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/cf979a55e169157357100330b3002a/aih-tih-sc-37dd87-R1_B23WHYVLT4_1_R2.fastq.gz,reverse
aih-tih-sc-3924cb-R1_B23WHYVLT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/363f3b82fdc040b8c6eed3e07232da/aih-tih-sc-3924cb-R1_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/363f3b82fdc040b8c6eed3e07232da/aih-tih-sc-3924cb-R1_B23WHYVLT4_1_R2.fastq.gz,reverse
aih-tih-sc-3b3c1e-R1_B23WHYVLT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/b83ee5ea89c774b8999f4ff24ac6f7/aih-tih-sc-3b3c1e-R1_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/b83ee5ea89c774b8999f4ff24ac6f7/aih-tih-sc-3b3c1e-R1_B23WHYVLT4_1_R2.fastq.gz,reverse
aih-tih-sc-3e91d2-R1_B23WHYVLT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/ab9ba0a3afe03ef17cc9907562d922/aih-tih-sc-3e91d2-R1_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/ab9ba0a3afe03ef17cc9907562d922/aih-tih-sc-3e91d2-R1_B23WHYVLT4_1_R2.fastq.gz,reverse
aih-tih-sc-445ab1-R1_B23WHYVLT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/309e5217d70279cfad67b3a46d7c55/aih-tih-sc-445ab1-R1_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/309e5217d70279cfad67b3a46d7c55/aih-tih-sc-445ab1-R1_B23WHYVLT4_1_R2.fastq.gz,reverse
aih-tih-sc-446670-R1_B23WHYVLT4_1,SAMPLE ,/natera-rnd-pltf-dev-nextflow-scratch-01/work/88/3b26f9e54c9d433c6a71d3c8076728/aih-tih-sc-446670-R1_B23WHYVLT4_1_R1.fastq.gz,/natera-rnd-pltf-dev-nextflow-scratch-01/work/88/3b26f9e54c9d433c6a71d3c8076728/aih-tih-sc-446670-R1_B23WHYVLT4_1_R2.fastq.gz,reverse
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