File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/0b6d08e2b090c1c21b740668b362cb/.command.log
Size
6.9 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-ea2fad-R1_B23WHYVLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/b10ef75886c8285cc101920ffd683d/aih-tih-sc-ea2fad-R1_B23WHYVLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/0598e7607275a3c6a022ec35cae97f/aih-tih-sc-ea2fad-R1_B23WHYVLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-8900cb43-4dca-49ac-a290-1d176a2e0012/bb/b9dd0d6df869a3d0edd9f161adc899/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/0b6d08e2b090c1c21b740668b362cb/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/0b6d08e2b090c1c21b740668b362cb/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
LNX2--ATP8A2
starfusion
arriba
SPCS2--DHCR7
starfusion
arriba
MAN1A2--ST8SIA1
starfusion
arriba
PICALM--CCDC83
starfusion
arriba
ZNF703--PICALM
starfusion
arriba
FSIP1--AC013652.1
starfusion
arriba
KANSL1--ARHGAP27
starfusion
arriba
PCF11--PICALM
starfusion
TCF12--IL16
starfusion
arriba
MSI2--DDHD2
starfusion
arriba
UVRAG--CCDC83
starfusion
arriba
TEX14--ADAM9
starfusion
arriba
UVRAG--VTCN1
starfusion
arriba
TRIM37--SMIM36
starfusion
arriba
MSI2--VTCN1
starfusion
CEP43--ERBB4
starfusion
AC060809.1--ERBB4
starfusion
PTPRM--SRGAP2
starfusion
VTCN1--VTCN1
arriba
Metazoa_SRP--VTCN1
arriba
STX16--NPEPL1
arriba
MIPEP--EEF1A1P11
arriba
MIPEP--RN7SL831P
arriba
AC092807.3--DDAH1
arriba
NPHP3--ACAD11
arriba
HGD--GTF2E1
arriba
TVP23C--CDRT4
arriba
RSF1--TENM4
arriba
VTCN1--SMURF2
arriba
VTCN1--MICOS10P2
arriba

  0%|          | 0/30 [00:00<?, ?it/s]
Processing LNX2--ATP8A2:   0%|          | 0/30 [00:00<?, ?it/s]
Processing LNX2--ATP8A2:   3%|▎         | 1/30 [00:00<00:03,  9.17it/s]
Processing SPCS2--DHCR7:   3%|▎         | 1/30 [00:00<00:03,  9.17it/s]
Processing SPCS2--DHCR7:   7%|▋         | 2/30 [00:00<00:03,  9.31it/s]
Processing MAN1A2--ST8SIA1:   7%|▋         | 2/30 [00:00<00:03,  9.31it/s]
Processing MAN1A2--ST8SIA1:  10%|█         | 3/30 [00:00<00:02,  9.37it/s]
Processing PICALM--CCDC83:  10%|█         | 3/30 [00:00<00:02,  9.37it/s] 
Processing PICALM--CCDC83:  13%|█▎        | 4/30 [00:00<00:02,  9.39it/s]
Processing ZNF703--PICALM:  13%|█▎        | 4/30 [00:00<00:02,  9.39it/s]
Processing ZNF703--PICALM:  17%|█▋        | 5/30 [00:00<00:02,  9.40it/s]
Processing FSIP1--AC013652.1:  17%|█▋        | 5/30 [00:00<00:02,  9.40it/s]
Processing FSIP1--AC013652.1:  20%|██        | 6/30 [00:00<00:02,  9.42it/s]
Processing KANSL1--ARHGAP27:  20%|██        | 6/30 [00:00<00:02,  9.42it/s] 
Processing KANSL1--ARHGAP27:  23%|██▎       | 7/30 [00:00<00:02,  9.42it/s]
Processing PCF11--PICALM:  23%|██▎       | 7/30 [00:00<00:02,  9.42it/s]   
Processing PCF11--PICALM:  27%|██▋       | 8/30 [00:00<00:02,  9.42it/s]
Processing TCF12--IL16:  27%|██▋       | 8/30 [00:00<00:02,  9.42it/s]  
Processing TCF12--IL16:  30%|███       | 9/30 [00:00<00:02,  9.42it/s]
Processing MSI2--DDHD2:  30%|███       | 9/30 [00:00<00:02,  9.42it/s]
Processing MSI2--DDHD2:  33%|███▎      | 10/30 [00:01<00:02,  9.42it/s]
Processing UVRAG--CCDC83:  33%|███▎      | 10/30 [00:01<00:02,  9.42it/s]
Processing UVRAG--CCDC83:  37%|███▋      | 11/30 [00:01<00:02,  9.43it/s]
Processing TEX14--ADAM9:  37%|███▋      | 11/30 [00:01<00:02,  9.43it/s] 
Processing TEX14--ADAM9:  40%|████      | 12/30 [00:01<00:01,  9.42it/s]
Processing UVRAG--VTCN1:  40%|████      | 12/30 [00:01<00:01,  9.42it/s]
Processing UVRAG--VTCN1:  43%|████▎     | 13/30 [00:01<00:01,  9.43it/s]
Processing TRIM37--SMIM36:  43%|████▎     | 13/30 [00:01<00:01,  9.43it/s]
Processing TRIM37--SMIM36:  47%|████▋     | 14/30 [00:01<00:01,  9.42it/s]
Processing MSI2--VTCN1:  47%|████▋     | 14/30 [00:01<00:01,  9.42it/s]   
Processing MSI2--VTCN1:  50%|█████     | 15/30 [00:01<00:01,  9.42it/s]
Processing CEP43--ERBB4:  50%|█████     | 15/30 [00:01<00:01,  9.42it/s]
Processing CEP43--ERBB4:  53%|█████▎    | 16/30 [00:01<00:01,  9.43it/s]
Processing AC060809.1--ERBB4:  53%|█████▎    | 16/30 [00:01<00:01,  9.43it/s]
Processing AC060809.1--ERBB4:  57%|█████▋    | 17/30 [00:01<00:01,  9.42it/s]
Processing PTPRM--SRGAP2:  57%|█████▋    | 17/30 [00:01<00:01,  9.42it/s]    
Processing PTPRM--SRGAP2:  60%|██████    | 18/30 [00:01<00:01,  9.43it/s]
Processing VTCN1--VTCN1:  60%|██████    | 18/30 [00:01<00:01,  9.43it/s] 
Processing VTCN1--VTCN1:  63%|██████▎   | 19/30 [00:02<00:01,  9.43it/s]
Processing Metazoa_SRP--VTCN1:  63%|██████▎   | 19/30 [00:02<00:01,  9.43it/s]
Processing Metazoa_SRP--VTCN1:  67%|██████▋   | 20/30 [00:02<00:01,  9.43it/s]
Processing STX16--NPEPL1:  67%|██████▋   | 20/30 [00:02<00:01,  9.43it/s]     
Processing STX16--NPEPL1:  70%|███████   | 21/30 [00:02<00:00,  9.43it/s]
Processing MIPEP--EEF1A1P11:  70%|███████   | 21/30 [00:02<00:00,  9.43it/s]
Processing MIPEP--EEF1A1P11:  73%|███████▎  | 22/30 [00:02<00:00,  9.43it/s]
Processing MIPEP--RN7SL831P:  73%|███████▎  | 22/30 [00:02<00:00,  9.43it/s]
Processing MIPEP--RN7SL831P:  77%|███████▋  | 23/30 [00:02<00:00,  9.43it/s]
Processing AC092807.3--DDAH1:  77%|███████▋  | 23/30 [00:02<00:00,  9.43it/s]
Processing AC092807.3--DDAH1:  80%|████████  | 24/30 [00:02<00:00,  9.43it/s]
Processing NPHP3--ACAD11:  80%|████████  | 24/30 [00:02<00:00,  9.43it/s]    
Processing NPHP3--ACAD11:  83%|████████▎ | 25/30 [00:02<00:00,  9.44it/s]
Processing HGD--GTF2E1:  83%|████████▎ | 25/30 [00:02<00:00,  9.44it/s]  
Processing HGD--GTF2E1:  87%|████████▋ | 26/30 [00:02<00:00,  9.44it/s]
Processing TVP23C--CDRT4:  87%|████████▋ | 26/30 [00:02<00:00,  9.44it/s]
Processing TVP23C--CDRT4:  90%|█████████ | 27/30 [00:02<00:00,  9.42it/s]
Processing RSF1--TENM4:  90%|█████████ | 27/30 [00:02<00:00,  9.42it/s]  
Processing RSF1--TENM4:  93%|█████████▎| 28/30 [00:02<00:00,  9.39it/s]
Processing VTCN1--SMURF2:  93%|█████████▎| 28/30 [00:02<00:00,  9.39it/s]
Processing VTCN1--SMURF2:  97%|█████████▋| 29/30 [00:03<00:00,  9.41it/s]
Processing VTCN1--MICOS10P2:  97%|█████████▋| 29/30 [00:03<00:00,  9.41it/s]
Processing VTCN1--MICOS10P2: 100%|██████████| 30/30 [00:03<00:00,  9.41it/s]
Processing VTCN1--MICOS10P2: 100%|██████████| 30/30 [00:03<00:00,  9.41it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory