File Info
- Filename
- aih-tih-sc-ea2fad-R1_B23WHYVLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/0b6d08e2b090c1c21b740668b362cb/aih-tih-sc-ea2fad-R1_B23WHYVLT4_1.fusions.csv
- Size
- 7.9 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-ea2fad-R1_B23WHYVLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| LNX2--ATP8A2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr13:27567640#chr13:25529999,reading-frame: out-of-frame,type: inversion,split_reads1: 60,split_reads2: 87,discordant_mates: 0,coverage1: 1023,coverage2: 934,confidence: high | position: chr13:27567640:-#chr13:25529999:+,junction_reads: 153,spanning_reads: 0,ffmp: 0.832 | |
| SPCS2--DHCR7 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr11:74949399#chr11:71442353,reading-frame: in-frame,type: inversion,split_reads1: 68,split_reads2: 39,discordant_mates: 0,coverage1: 2289,coverage2: 1027,confidence: high | position: chr11:74949399:+#chr11:71442353:-,junction_reads: 113,spanning_reads: 0,ffmp: 0.6145 | |
| MAN1A2--ST8SIA1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr1:117442325#chr12:22287293,reading-frame: in-frame,type: translocation,split_reads1: 53,split_reads2: 44,discordant_mates: 0,coverage1: 1483,coverage2: 187,confidence: high | position: chr1:117442325:+#chr12:22287293:-,junction_reads: 105,spanning_reads: 0,ffmp: 0.571 | |
| PICALM--CCDC83 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr11:85974708#chr11:85911281,reading-frame: in-frame,type: inversion,split_reads1: 27,split_reads2: 68,discordant_mates: 0,coverage1: 9116,coverage2: 942,confidence: high | position: chr11:85974708:-#chr11:85911281:+,junction_reads: 98,spanning_reads: 0,ffmp: 0.5329 | |
| ZNF703--PICALM | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:37698886#chr11:85983973,reading-frame: .,type: translocation,split_reads1: 30,split_reads2: 35,discordant_mates: 0,coverage1: 384,coverage2: 11684,confidence: high | position: chr8:37698886:+#chr11:85983973:-,junction_reads: 79,spanning_reads: 0,ffmp: 0.4296 | |
| FSIP1--AC013652.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr15:39600845#chr15:39071608,reading-frame: .,type: deletion,split_reads1: 56,split_reads2: 9,discordant_mates: 0,coverage1: 6107,coverage2: 20,confidence: high | position: chr15:39600845:-#chr15:39071608:-,junction_reads: 70,spanning_reads: 0,ffmp: 0.3807 | |
| KANSL1--ARHGAP27 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:46170855#chr17:45406083,reading-frame: out-of-frame,type: deletion,split_reads1: 17,split_reads2: 39,discordant_mates: 0,coverage1: 511,coverage2: 1212,confidence: high | position: chr17:46170855:-#chr17:45406083:-,junction_reads: 60,spanning_reads: 0,ffmp: 0.3263 | |
| PCF11--PICALM | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr11:83157631:+#chr11:85974812:-,junction_reads: 55,spanning_reads: 0,ffmp: 0.2991 | ||
| TCF12--IL16 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr15:56921098#chr15:81265659,reading-frame: in-frame,type: deletion,split_reads1: 29,split_reads2: 11,discordant_mates: 0,coverage1: 8826,coverage2: 214,confidence: high | position: chr15:56921098:+#chr15:81265659:+,junction_reads: 45,spanning_reads: 0,ffmp: 0.2447 | |
| MSI2--DDHD2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:57679714#chr8:38234394,reading-frame: .,type: translocation,split_reads1: 15,split_reads2: 21,discordant_mates: 0,coverage1: 584,coverage2: 1195,confidence: high | position: chr17:57679714:+#chr8:38234394:+,junction_reads: 36,spanning_reads: 0,ffmp: 0.1958 | |
| UVRAG--CCDC83 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr11:76016980#chr11:85919349,reading-frame: out-of-frame,type: deletion,split_reads1: 13,split_reads2: 19,discordant_mates: 0,coverage1: 1203,coverage2: 2361,confidence: high | position: chr11:76016980:+#chr11:85919349:+,junction_reads: 33,spanning_reads: 0,ffmp: 0.1795 | |
| TEX14--ADAM9 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:58565747#chr8:39071298,reading-frame: in-frame,type: translocation,split_reads1: 1,split_reads2: 16,discordant_mates: 0,coverage1: 1174,coverage2: 2753,confidence: high | position: chr17:58565747:-#chr8:39071298:+,junction_reads: 29,spanning_reads: 0,ffmp: 0.1577 | |
| UVRAG--VTCN1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr11:75888903#chr1:117170171,reading-frame: out-of-frame,type: translocation,split_reads1: 9,split_reads2: 9,discordant_mates: 0,coverage1: 3550,coverage2: 2090,confidence: high | position: chr11:75888903:+#chr1:117170171:-,junction_reads: 19,spanning_reads: 0,ffmp: 0.1033 | |
| TRIM37--SMIM36 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:58999381#chr17:55511361,reading-frame: .,type: deletion,split_reads1: 11,split_reads2: 6,discordant_mates: 0,coverage1: 847,coverage2: 32,confidence: high | position: chr17:58999381:-#chr17:55511361:-,junction_reads: 17,spanning_reads: 0,ffmp: 0.0924 | |
| MSI2--VTCN1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:57401471:+#chr1:117170171:-,junction_reads: 15,spanning_reads: 0,ffmp: 0.0816 | ||
| CEP43--ERBB4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr6:167050315:+#chr2:211788159:-,junction_reads: 12,spanning_reads: 0,ffmp: 0.0326 | ||
| AC060809.1--ERBB4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:81427545:+#chr2:211788159:-,junction_reads: 12,spanning_reads: 0,ffmp: 0.0326 | ||
| PTPRM--SRGAP2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr18:8114827:+#chr1:206303281:+,junction_reads: 10,spanning_reads: 0,ffmp: 0.0181 | ||
| VTCN1--VTCN1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:117225109#chr1:117170171,reading-frame: .,type: deletion/read-through,split_reads1: 2,split_reads2: 59,discordant_mates: 0,coverage1: 173,coverage2: 2090,confidence: high | ||
| Metazoa_SRP--VTCN1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:117225109#chr1:117170171,reading-frame: .,type: deletion/read-through,split_reads1: 2,split_reads2: 59,discordant_mates: 0,coverage1: 173,coverage2: 2090,confidence: high | ||
| STX16--NPEPL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 27,split_reads2: 22,discordant_mates: 0,coverage1: 1222,coverage2: 366,confidence: high | ||
| MIPEP--EEF1A1P11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr13:23836240#chr1:96471970,reading-frame: out-of-frame,type: translocation,split_reads1: 25,split_reads2: 3,discordant_mates: 0,coverage1: 525,coverage2: 8,confidence: high | ||
| MIPEP--RN7SL831P | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr13:23836240#chr1:96471970,reading-frame: out-of-frame,type: translocation,split_reads1: 25,split_reads2: 3,discordant_mates: 0,coverage1: 525,coverage2: 8,confidence: high | ||
| AC092807.3--DDAH1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:85496166#chr1:85358847,reading-frame: .,type: deletion/read-through,split_reads1: 5,split_reads2: 16,discordant_mates: 0,coverage1: 83,coverage2: 393,confidence: high | ||
| NPHP3--ACAD11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:132681914#chr3:132644896,reading-frame: in-frame,type: deletion/read-through,split_reads1: 12,split_reads2: 3,discordant_mates: 0,coverage1: 325,coverage2: 285,confidence: high | ||
| HGD--GTF2E1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:120675939#chr3:120750523,reading-frame: .,type: deletion/read-through/3'-3',split_reads1: 1,split_reads2: 11,discordant_mates: 0,coverage1: 67,coverage2: 447,confidence: high | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 5,split_reads2: 7,discordant_mates: 0,coverage1: 146,coverage2: 164,confidence: high | |
| RSF1--TENM4 | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr11:77820528#chr11:79355674,reading-frame: out-of-frame,type: inversion/5'-5',split_reads1: 7,split_reads2: 3,discordant_mates: 0,coverage1: 1468,coverage2: 3,confidence: high | |
| VTCN1--SMURF2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:117170107#chr17:64700080,reading-frame: out-of-frame,type: translocation,split_reads1: 6,split_reads2: 2,discordant_mates: 0,coverage1: 2157,coverage2: 8,confidence: high | ||
| VTCN1--MICOS10P2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:117170107#chr17:64700080,reading-frame: out-of-frame,type: translocation,split_reads1: 6,split_reads2: 2,discordant_mates: 0,coverage1: 2157,coverage2: 8,confidence: high |
31 rows