File Info

Filename
aih-tih-sc-5c902f-R1_B23WHYVLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/e7950b9f714f806eb79560112414db/aih-tih-sc-5c902f-R1_B23WHYVLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:34:31
                             Started mapping on |	Jun 08 07:36:31
                                    Finished on |	Jun 08 08:33:34
       Mapping speed, Million of reads per hour |	232.28

                          Number of input reads |	220860575
                      Average input read length |	237
                                    UNIQUE READS:
                   Uniquely mapped reads number |	203671358
                        Uniquely mapped reads % |	92.22%
                          Average mapped length |	237.71
                       Number of splices: Total |	187478198
            Number of splices: Annotated (sjdb) |	184714130
                       Number of splices: GT/AG |	185631341
                       Number of splices: GC/AG |	1346532
                       Number of splices: AT/AC |	137293
               Number of splices: Non-canonical |	363032
                      Mismatch rate per base, % |	0.37%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.02
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.65
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	11473404
             % of reads mapped to multiple loci |	5.19%
        Number of reads mapped to too many loci |	327252
             % of reads mapped to too many loci |	0.15%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	753921
       % of reads unmapped: too many mismatches |	0.34%
            Number of reads unmapped: too short |	2677254
                 % of reads unmapped: too short |	1.21%
                Number of reads unmapped: other |	367350
                     % of reads unmapped: other |	0.17%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3347204
                            % of chimeric reads |	1.52%