.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:STARFUSION_WORKFLOW:STARFUSION (aih-tih-sc-89cc59-R1_B23WHYVLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/af21c46957f3779ad309958099c219/.command.log
Size: 72.4 KB
Task: NFCORE_RNAFUSION:RNAFUSION:STARFUSION_WORKFLOW:STARFUSION (aih-tih-sc-89cc59-R1_B23WHYVLT4_1)
Attempt
Content

  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/36fe72607311af6e4b3431d7406bd2/aih-tih-sc-89cc59-R1_B23WHYVLT4_1.Chimeric.out.junction
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/af21c46957f3779ad309958099c219/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/af21c46957f3779ad309958099c219/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/41a9964700bf35e6c5837b500db11d/aih-tih-sc-89cc59-R1_B23WHYVLT4_1_2.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/41a9964700bf35e6c5837b500db11d/aih-tih-sc-89cc59-R1_B23WHYVLT4_1_1.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)

-ctat genome lib [/tmp/nxf.A6DtlzMNVR/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.A6DtlzMNVR/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary
-sample contains 176316506 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.A6DtlzMNVR/ctat_genome_lib_build_dir  -J /tmp/nxf.A6DtlzMNVR/aih-tih-sc-89cc59-R1_B23WHYVLT4_1.Chimeric.out.junction  -O /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.A6DtlzMNVR/aih-tih-sc-89cc59-R1_B23WHYVLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.A6DtlzMNVR/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

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[2700000], rate=59102.52/min -building interval tree based on /tmp/nxf.A6DtlzMNVR/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

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[2400000], rate=48241.21/min 
[2410000], rate=48328.88/min 
[2420000], rate=48432.29/min 
[2430000], rate=48535.29/min 
[2440000], rate=48637.87/min 
[2450000], rate=48740.05/min 
[2460000], rate=48825.67/min 
[2470000], rate=48927.04/min 
[2480000], rate=48963.47/min 
[2490000], rate=48967.55/min 
[2500000], rate=49003.59/min 
[2510000], rate=49039.40/min 
[2520000], rate=49138.77/min 
[2530000], rate=49142.12/min 
[2540000], rate=49177.15/min 
[2550000], rate=49227.80/min 
[2560000], rate=49278.15/min 
[2570000], rate=49328.21/min 
[2580000], rate=49393.75/min 
[2590000], rate=49474.69/min 
[2600000], rate=49571.02/min 
[2610000], rate=49651.24/min 
[2620000], rate=49809.89/min 
[2630000], rate=49936.71/min 
[2640000], rate=50031.59/min 
[2650000], rate=50126.10/min 
[2660000], rate=50220.26/min 
[2670000], rate=50298.27/min -building interval tree based on /tmp/nxf.A6DtlzMNVR/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

[10000], rate=31578.95/min 
[20000], rate=31578.95/min 
[30000], rate=31578.95/min 
[40000], rate=32000.00/min 
[50000], rate=32608.70/min 
[60000], rate=33027.52/min 
[70000], rate=33600.00/min 
[80000], rate=34042.55/min 
[90000], rate=35064.94/min 
[100000], rate=35294.12/min 
[110000], rate=36263.74/min 
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[320000], rate=55331.41/min 
[330000], rate=56090.65/min 
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[360000], rate=54135.34/min 
[370000], rate=53623.19/min 
[380000], rate=53271.03/min 
[390000], rate=53181.82/min 
[400000], rate=53215.08/min 
[410000], rate=53362.26/min 
[420000], rate=53731.34/min 
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[450000], rate=54766.73/min 
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[530000], rate=59550.56/min 
[540000], rate=60560.75/min 
[550000], rate=61682.24/min 
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[570000], rate=63568.77/min 
[580000], rate=64206.64/min 
[590000], rate=64954.13/min 
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[610000], rate=65591.40/min 
[620000], rate=66428.57/min 
[630000], rate=67500.00/min 
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[650000], rate=68661.97/min 
[660000], rate=69352.01/min 
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[680000], rate=68341.71/min 
[690000], rate=67647.06/min 
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[710000], rate=66458.66/min 
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[790000], rate=65289.26/min 
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[810000], rate=65853.66/min 
[820000], rate=66218.03/min 
[830000], rate=66488.65/min 
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[850000], rate=66841.42/min 
[860000], rate=65984.65/min 
[870000], rate=64603.96/min 
[880000], rate=63461.54/min 
[890000], rate=61520.74/min 
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[910000], rate=60132.16/min 
[920000], rate=60327.87/min 
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[950000], rate=60063.22/min 
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[990000], rate=57391.30/min 
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[1130000], rate=53093.19/min 
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[1170000], rate=52821.67/min 
[1180000], rate=52835.82/min 
[1190000], rate=52538.63/min 
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[1210000], rate=51198.87/min 
[1220000], rate=50868.66/min 
[1230000], rate=50306.75/min 
[1240000], rate=50338.29/min 
[1250000], rate=50403.23/min 
[1260000], rate=50400.00/min 
[1270000], rate=49674.05/min 
[1280000], rate=49167.73/min 
[1290000], rate=49267.98/min 
[1300000], rate=49461.00/min 
[1310000], rate=49621.21/min 
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[1330000], rate=49781.66/min 
[1340000], rate=49446.49/min 
[1350000], rate=49390.24/min 
[1360000], rate=49484.54/min 
[1370000], rate=48899.46/min 
[1380000], rate=48223.65/min 
[1390000], rate=47225.37/min 
[1400000], rate=46848.86/min 
[1410000], rate=46407.02/min 
[1420000], rate=45391.58/min 
[1430000], rate=45205.48/min 
[1440000], rate=45046.92/min 
[1450000], rate=44868.49/min 
[1460000], rate=44287.16/min 
[1470000], rate=43750.00/min 
[1480000], rate=43023.26/min 
[1490000], rate=42490.49/min 
[1500000], rate=42174.32/min 
[1510000], rate=41886.27/min 
[1520000], rate=41873.28/min 
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[1540000], rate=41734.42/min 
[1550000], rate=41760.22/min 
[1560000], rate=41655.54/min 
[1570000], rate=41626.16/min 
[1580000], rate=41633.73/min 
[1590000], rate=41659.39/min 
[1600000], rate=41630.53/min 
[1610000], rate=41405.92/min 
[1620000], rate=41047.30/min 
[1630000], rate=40750.00/min 
[1640000], rate=40779.11/min 
[1650000], rate=40640.39/min 
[1660000], rate=40340.22/min 
[1670000], rate=40403.23/min 
[1680000], rate=40481.93/min 
[1690000], rate=40158.42/min 
[1700000], rate=39953.00/min 
[1710000], rate=40046.84/min 
[1720000], rate=40155.64/min 
[1730000], rate=40263.77/min 
[1740000], rate=40200.23/min 
[1750000], rate=39954.34/min 
[1760000], rate=39639.64/min 
[1770000], rate=39391.69/min 
[1780000], rate=39453.27/min 
[1790000], rate=39528.89/min 
[1800000], rate=39662.14/min 
[1810000], rate=39780.22/min 
[1820000], rate=39883.13/min 
[1830000], rate=40014.58/min 
[1840000], rate=40160.06/min 
[1850000], rate=40246.56/min 
[1860000], rate=40317.92/min 
[1870000], rate=40432.43/min 
[1880000], rate=40517.24/min 
[1890000], rate=40572.45/min 
[1900000], rate=40627.23/min 
[1910000], rate=40724.95/min 
[1920000], rate=40822.11/min 
[1930000], rate=40918.73/min 
[1940000], rate=40713.54/min 
[1950000], rate=40233.84/min 
[1960000], rate=40095.47/min 
[1970000], rate=40094.98/min 
[1980000], rate=40108.04/min 
[1990000], rate=40188.49/min 
[2000000], rate=40281.97/min 
[2010000], rate=40361.45/min 
[2020000], rate=40400.00/min 
[2030000], rate=40451.68/min 
[2040000], rate=40489.58/min 
[2050000], rate=40527.18/min 
[2060000], rate=40617.81/min 
[2070000], rate=40748.03/min 
[2080000], rate=40810.99/min 
[2090000], rate=40860.22/min 
[2100000], rate=40869.28/min 
[2110000], rate=40904.68/min 
[2120000], rate=40979.38/min 
[2130000], rate=41040.46/min 
[2140000], rate=41088.00/min 
[2150000], rate=41148.33/min 
[2160000], rate=41195.17/min 
[2170000], rate=41241.69/min 
[2180000], rate=41287.88/min 
[2190000], rate=41398.87/min 
[2200000], rate=41444.27/min 
[2210000], rate=41476.38/min 
[2220000], rate=41508.26/min 
[2230000], rate=41591.54/min 
[2240000], rate=41661.50/min 
[2250000], rate=41705.28/min 
[2260000], rate=41748.77/min 
[2270000], rate=41715.16/min 
[2280000], rate=41669.20/min 
[2290000], rate=41585.96/min 
[2300000], rate=41603.86/min 
[2310000], rate=41621.62/min 
[2320000], rate=41676.65/min 
[2330000], rate=41706.44/min 
[2340000], rate=41698.84/min 
[2350000], rate=41691.31/min 
[2360000], rate=41708.39/min 
[2370000], rate=41737.60/min 
[2380000], rate=41754.39/min 
[2390000], rate=41758.88/min 
[2400000], rate=41811.85/min 
[2410000], rate=41840.28/min 
[2420000], rate=41868.51/min 
[2430000], rate=41896.55/min 
[2440000], rate=41912.40/min 
[2450000], rate=41964.03/min 
[2460000], rate=42015.37/min 
[2470000], rate=42078.36/min 
[2480000], rate=42152.97/min 
[2490000], rate=42227.25/min 
[2500000], rate=42301.18/min 
[2510000], rate=42386.72/min 
[2520000], rate=42459.98/min 
[2530000], rate=42544.84/min 
[2540000], rate=42629.37/min 
[2550000], rate=42713.57/min 
[2560000], rate=42797.44/min 
[2570000], rate=42892.91/min 
[2580000], rate=42976.12/min 
[2590000], rate=43070.95/min 
[2600000], rate=43165.47/min 
[2610000], rate=43259.67/min 
[2620000], rate=43317.72/min 
[2630000], rate=43387.41/min -building interval tree based on /tmp/nxf.A6DtlzMNVR/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

[10000], rate=100000.00/min 
[20000], rate=100000.00/min 
[30000], rate=120000.00/min 
[40000], rate=126315.79/min 
[50000], rate=111111.11/min 
[60000], rate=100000.00/min 
[70000], rate=95454.55/min 
[80000], rate=92307.69/min 
[90000], rate=100000.00/min 
[100000], rate=111111.11/min 
[110000], rate=110000.00/min 
[120000], rate=116129.03/min 
[130000], rate=113043.48/min 
[140000], rate=112000.00/min 
[150000], rate=111111.11/min 
[160000], rate=109090.91/min 
[170000], rate=107368.42/min 
[180000], rate=110204.08/min 
[190000], rate=115151.52/min 
[200000], rate=117647.06/min 
[210000], rate=120000.00/min 
[220000], rate=122222.22/min 
[230000], rate=123214.29/min 
[240000], rate=125217.39/min 
[250000], rate=126050.42/min 
[260000], rate=127868.85/min 
[270000], rate=131707.32/min 
[280000], rate=135483.87/min 
[290000], rate=140322.58/min 
[300000], rate=145161.29/min 
[310000], rate=145312.50/min 
[320000], rate=144360.90/min 
[330000], rate=143478.26/min 
[340000], rate=141666.67/min 
[350000], rate=141891.89/min 
[360000], rate=142105.26/min 
[370000], rate=137888.20/min 
[380000], rate=134117.65/min 
[390000], rate=132203.39/min 
[400000], rate=129729.73/min 
[410000], rate=132258.06/min 
[420000], rate=134759.36/min 
[430000], rate=133678.76/min 
[440000], rate=135384.62/min 
[450000], rate=133663.37/min 
[460000], rate=132692.31/min 
[470000], rate=131775.70/min 
[480000], rate=130909.09/min 
[490000], rate=129515.42/min 
[500000], rate=131004.37/min 
[510000], rate=133624.45/min 
[520000], rate=133333.33/min 
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[580000], rate=137007.87/min 
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[640000], rate=144360.90/min 
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[660000], rate=143478.26/min 
[670000], rate=143571.43/min 
[680000], rate=141666.67/min 
[690000], rate=139864.86/min 
[700000], rate=138157.89/min 
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[760000], rate=139449.54/min 
[770000], rate=138738.74/min 
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[800000], rate=138728.32/min 
[810000], rate=138857.14/min 
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[840000], rate=141176.47/min 
[850000], rate=141666.67/min 
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[890000], rate=143163.54/min 
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[910000], rate=146380.70/min 
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[930000], rate=146842.11/min 
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[950000], rate=145780.05/min 
[960000], rate=145454.55/min 
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[1000000], rate=142517.81/min 
[1010000], rate=141588.79/min 
[1020000], rate=140366.97/min 
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[1040000], rate=142791.76/min 
[1050000], rate=142212.19/min 
[1060000], rate=142921.35/min 
[1070000], rate=142035.40/min 
[1080000], rate=142105.26/min 
[1090000], rate=142794.76/min 
[1100000], rate=142241.38/min 
[1110000], rate=141401.27/min 
[1120000], rate=142675.16/min 
[1130000], rate=143340.38/min 
[1140000], rate=143396.23/min 
[1150000], rate=143750.00/min 
[1160000], rate=144099.38/min 
[1170000], rate=144444.44/min 
[1180000], rate=144489.80/min 
[1190000], rate=144827.59/min 
[1200000], rate=145748.99/min 
[1210000], rate=146963.56/min 
[1220000], rate=147878.79/min 
[1230000], rate=141923.08/min 
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[1250000], rate=116099.07/min 
[1260000], rate=107539.12/min 
[1270000], rate=101329.79/min 
[1280000], rate=95522.39/min 
[1290000], rate=88054.61/min 
[1300000], rate=81675.39/min 
[1310000], rate=77821.78/min 
[1320000], rate=75717.02/min 
[1330000], rate=72810.22/min 
[1340000], rate=70526.32/min 
[1350000], rate=67556.30/min 
[1360000], rate=65542.17/min 
[1370000], rate=63968.87/min 
[1380000], rate=62774.83/min 
[1390000], rate=61054.17/min 
[1400000], rate=56949.15/min 
[1410000], rate=54475.21/min 
[1420000], rate=52886.41/min 
[1430000], rate=52285.19/min 
[1440000], rate=51736.53/min 
[1450000], rate=50230.95/min 
[1460000], rate=49829.35/min 
[1470000], rate=49439.46/min 
[1480000], rate=48710.92/min 
[1490000], rate=47553.19/min 
[1500000], rate=46753.25/min 
[1510000], rate=46271.71/min 
[1520000], rate=45440.96/min 
[1530000], rate=45243.96/min 
[1540000], rate=45227.61/min 
[1550000], rate=45211.47/min 
[1560000], rate=45239.25/min 
[1570000], rate=45201.54/min 
[1580000], rate=45164.36/min 
[1590000], rate=45127.72/min 
[1600000], rate=45091.59/min 
[1610000], rate=45119.10/min 
[1620000], rate=45062.59/min 
[1630000], rate=44882.97/min 
[1640000], rate=44324.32/min 
[1650000], rate=43844.11/min 
[1660000], rate=43493.45/min 
[1670000], rate=43208.28/min 
[1680000], rate=42911.88/min 
[1690000], rate=42676.77/min 
[1700000], rate=42500.00/min 
[1710000], rate=42361.68/min 
[1720000], rate=42469.14/min 
[1730000], rate=42558.43/min 
[1740000], rate=42664.49/min 
[1750000], rate=42752.44/min 
[1760000], rate=42891.96/min 
[1770000], rate=43030.79/min 
[1780000], rate=42960.58/min 
[1790000], rate=42788.84/min 
[1800000], rate=42738.43/min 
[1810000], rate=42355.69/min 
[1820000], rate=42032.33/min 
[1830000], rate=41860.47/min 
[1840000], rate=41613.27/min 
[1850000], rate=41387.02/min 
[1860000], rate=41256.93/min 
[1870000], rate=41265.17/min 
[1880000], rate=41333.82/min 
[1890000], rate=41432.23/min 
[1900000], rate=41499.82/min 
[1910000], rate=41597.10/min 
[1920000], rate=41708.91/min 
[1930000], rate=41820.15/min 
[1940000], rate=41930.84/min 
[1950000], rate=42056.07/min 
[1960000], rate=42195.91/min 
[1970000], rate=42335.24/min 
[1980000], rate=42443.73/min 
[1990000], rate=42235.59/min 
[2000000], rate=41987.40/min 
[2010000], rate=41701.24/min 
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[2030000], rate=41162.55/min 
[2040000], rate=40991.29/min 
[2050000], rate=40755.47/min 
[2060000], rate=40537.88/min 
[2070000], rate=40403.38/min 
[2080000], rate=39897.70/min 
[2090000], rate=39633.38/min 
[2100000], rate=39585.30/min 
[2110000], rate=39488.46/min 
[2120000], rate=39271.38/min 
[2130000], rate=39154.41/min 
[2140000], rate=39158.28/min 
[2150000], rate=39174.01/min 
[2160000], rate=39118.62/min 
[2170000], rate=39122.60/min 
[2180000], rate=39126.53/min 
[2190000], rate=39130.43/min 
[2200000], rate=39076.38/min 
[2210000], rate=39068.95/min 
[2220000], rate=39073.04/min 
[2230000], rate=39065.69/min 
[2240000], rate=39024.39/min 
[2250000], rate=39039.91/min 
[2260000], rate=39044.05/min 
[2270000], rate=39003.44/min 
[2280000], rate=38996.58/min 
[2290000], rate=39011.93/min 
[2300000], rate=38950.04/min 
[2310000], rate=38747.55/min 
[2320000], rate=38634.47/min 
[2330000], rate=38554.88/min 
[2340000], rate=38476.29/min 
[2350000], rate=38419.62/min 
[2360000], rate=38405.21/min 
[2370000], rate=38401.30/min 
[2380000], rate=38376.78/min 
[2390000], rate=38362.76/min 
[2400000], rate=38369.30/min 
[2410000], rate=38355.44/min 
[2420000], rate=38382.24/min 
[2430000], rate=38388.63/min 
[2440000], rate=38415.11/min 
[2450000], rate=38421.33/min 
[2460000], rate=38427.49/min 
[2470000], rate=38443.58/min 
[2480000], rate=38469.49/min 
[2490000], rate=38495.23/min 
[2500000], rate=38520.80/min 
[2510000], rate=38556.07/min 
[2520000], rate=38600.97/min 
[2530000], rate=38655.46/min 
[2540000], rate=38709.68/min 
[2550000], rate=38773.44/min 
[2560000], rate=38827.10/min 
[2570000], rate=38900.10/min 
[2580000], rate=38982.62/min 
[2590000], rate=39064.86/min 
[2600000], rate=39146.80/min 
[2610000], rate=39228.46/min 
[2620000], rate=39319.66/min 
[2630000], rate=39263.50/min 
[2640000], rate=39159.46/min 
[2650000], rate=39085.55/min 
[2660000], rate=38993.40/min 
[2670000], rate=38978.10/min 
[2680000], rate=38934.62/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.A6DtlzMNVR/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 0.00 reads per min processed...  
 12000000.00 reads per min processed...  
 18000000.00 reads per min processed...  
 24000000.00 reads per min processed...  
 15000000.00 reads per min processed...  
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 14000000.00 reads per min processed...  
 16000000.00 reads per min processed...  
 13500000.00 reads per min processed...  
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 6133333.33 reads per min processed...  
 6000000.00 reads per min processed...  
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 6109090.91 reads per min processed...  
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 6315789.47 reads per min processed...  
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 6600000.00 reads per min processed...  
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 6300000.00 reads per min processed...  
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 6289156.63 reads per min processed...  
 6285714.29 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.A6DtlzMNVR/aih-tih-sc-89cc59-R1_B23WHYVLT4_1.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.A6DtlzMNVR/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -256312.318877
EM: Round [1] log likelihood: -256046.345474
EM: Round [2] log likelihood: -255957.261371
EM: Round [3] log likelihood: -255916.253827
EM: Round [4] log likelihood: -255894.805045
EM: Round [5] log likelihood: -255882.691279
EM: Round [6] log likelihood: -255875.434515
EM: Round [7] log likelihood: -255870.855149
EM: Round [8] log likelihood: -255867.823921
EM: Round [9] log likelihood: -255865.728950
EM: Round [10] log likelihood: -255864.225115
EM: Round [11] log likelihood: -255863.109938
EM: Round [12] log likelihood: -255862.259960
EM: Round [13] log likelihood: -255861.597068
EM: Round [14] log likelihood: -255861.070087
EM: Round [15] log likelihood: -255860.644388
EM: Round [16] log likelihood: -255860.295843
EM: Round [17] log likelihood: -255860.007190
EM: Round [18] log likelihood: -255859.765788
EM: Round [19] log likelihood: -255859.562188
EM: Round [20] log likelihood: -255859.389195
EM: Round [21] log likelihood: -255859.241245
EM: Round [22] log likelihood: -255859.113974
EM: Round [23] log likelihood: -255859.003915
EM: Round [24] log likelihood: -255858.908286
EM: Round [25] log likelihood: -255858.824831
EM: Round [26] log likelihood: -255858.751705
EM: Round [27] log likelihood: -255858.687387
EM: Round [28] log likelihood: -255858.630617
EM: Round [29] log likelihood: -255858.580340
EM: Round [30] log likelihood: -255858.535673
EM: Round [31] log likelihood: -255858.495870
EM: Round [32] log likelihood: -255858.460298
EM: Round [33] log likelihood: -255858.428420
EM: Round [34] log likelihood: -255858.399775
EM: Round [35] log likelihood: -255858.373969
EM: Round [36] log likelihood: -255858.350662
EM: Round [37] log likelihood: -255858.329562
EM: Round [38] log likelihood: -255858.310415
EM: Round [39] log likelihood: -255858.293002
EM: Round [40] log likelihood: -255858.277130
EM: Round [41] log likelihood: -255858.262633
EM: Round [42] log likelihood: -255858.249364
EM: Round [43] log likelihood: -255858.237196
EM: Round [44] log likelihood: -255858.226016
EM: Round [45] log likelihood: -255858.215725
EM: Round [46] log likelihood: -255858.206235
EM: Round [47] log likelihood: -255858.197469
EM: Round [48] log likelihood: -255858.189358
EM: Round [49] log likelihood: -255858.181842
EM: Round [50] log likelihood: -255858.174866
EM: Round [51] log likelihood: -255858.168382
EM: Round [52] log likelihood: -255858.162348
EM: Round [53] log likelihood: -255858.156723
EM: Round [54] log likelihood: -255858.151474
EM: Round [55] log likelihood: -255858.146569
EM: Round [56] log likelihood: -255858.141981
EM: Round [57] log likelihood: -255858.137684
EM: Round [58] log likelihood: -255858.133655
EM: Round [59] log likelihood: -255858.129874
EM: Round [60] log likelihood: -255858.126322
EM: Round [61] log likelihood: -255858.122981
EM: Round [62] log likelihood: -255858.119837
EM: Round [63] log likelihood: -255858.116875
EM: Round [64] log likelihood: -255858.114083
EM: Round [65] log likelihood: -255858.111448
EM: Round [66] log likelihood: -255858.108960
EM: Round [67] log likelihood: -255858.106609
EM: Round [68] log likelihood: -255858.104386
EM: Round [69] log likelihood: -255858.102282
EM: Round [70] log likelihood: -255858.100290
EM: Round [71] log likelihood: -255858.098402
EM: Round [72] log likelihood: -255858.096613
EM: Round [73] log likelihood: -255858.094916
EM: Round [74] log likelihood: -255858.093305
EM: Round [75] log likelihood: -255858.091775
EM: Round [76] log likelihood: -255858.090322
EM: Round [77] log likelihood: -255858.088941
EM: Round [78] log likelihood: -255858.087627
EM: Round [79] log likelihood: -255858.086377
EM: Round [80] log likelihood: -255858.085188
EM: Round [81] log likelihood: -255858.084055
EM: Round [82] log likelihood: -255858.082976
EM: Round [83] log likelihood: -255858.081948
EM: Round [84] log likelihood: -255858.080968
EM: Round [85] log likelihood: -255858.080033
EM: Round [86] log likelihood: -255858.079141
EM: Round [87] log likelihood: -255858.078290
EM: Round [88] log likelihood: -255858.077477
EM: Round [89] log likelihood: -255858.076701
EM: Round [90] log likelihood: -255858.075959
EM: Round [91] log likelihood: -255858.075250
EM: Round [92] log likelihood: -255858.074573
EM: Round [93] log likelihood: -255858.073925
EM: Round [94] log likelihood: -255858.073306
EM: Round [95] log likelihood: -255858.072713
EM: Round [96] log likelihood: -255858.072145
EM: Round [97] log likelihood: -255858.071602
EM: Round [98] log likelihood: -255858.071082
EM: Round [99] log likelihood: -255858.070584
EM: Round [100] log likelihood: -255858.070106
EM: Round [101] log likelihood: -255858.069649
EM: Round [102] log likelihood: -255858.069210
EM: Round [103] log likelihood: -255858.068790
EM: Round [104] log likelihood: -255858.068387
EM: Round [105] log likelihood: -255858.068000
EM: Round [106] log likelihood: -255858.067629
EM: Round [107] log likelihood: -255858.067272
EM: Round [108] log likelihood: -255858.066930
EM: Round [109] log likelihood: -255858.066602
EM: Round [110] log likelihood: -255858.066287
EM: Round [111] log likelihood: -255858.065984
EM: Round [112] log likelihood: -255858.065693
EM: Round [113] log likelihood: -255858.065413
EM: Round [114] log likelihood: -255858.065144
EM: Round [115] log likelihood: -255858.064886
EM: Round [116] log likelihood: -255858.064637
EM: Round [117] log likelihood: -255858.064398
EM: Round [118] log likelihood: -255858.064168
EM: Round [119] log likelihood: -255858.063947
EM: Round [120] log likelihood: -255858.063734
EM: Round [121] log likelihood: -255858.063528
EM: Round [122] log likelihood: -255858.063331
EM: Round [123] log likelihood: -255858.063141
EM: Round [124] log likelihood: -255858.062958
EM: Round [125] log likelihood: -255858.062781
EM: Round [126] log likelihood: -255858.062611
EM: Round [127] log likelihood: -255858.062447
EM: Round [128] log likelihood: -255858.062289
EM: Round [129] log likelihood: -255858.062137
EM: Round [130] log likelihood: -255858.061990
EM: Round [131] log likelihood: -255858.061848
EM: Round [132] log likelihood: -255858.061712
EM: Round [133] log likelihood: -255858.061580
EM: Round [134] log likelihood: -255858.061452
EM: Round [135] log likelihood: -255858.061329
EM: Round [136] log likelihood: -255858.061211
EM: Round [137] log likelihood: -255858.061096
EM: Round [138] log likelihood: -255858.060986
EM: Round [139] log likelihood: -255858.060879
EM: Round [140] log likelihood: -255858.060775
EM: Round [141] log likelihood: -255858.060676
EM: Stopping iterations at round 141 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -255512.291449
EM: Round [1] log likelihood: -255304.433705
EM: Round [2] log likelihood: -255235.231417
EM: Round [3] log likelihood: -255203.822120
EM: Round [4] log likelihood: -255187.567607
EM: Round [5] log likelihood: -255178.449021
EM: Round [6] log likelihood: -255173.001400
EM: Round [7] log likelihood: -255169.560211
EM: Round [8] log likelihood: -255167.273665
EM: Round [9] log likelihood: -255165.684478
EM: Round [10] log likelihood: -255164.536132
EM: Round [11] log likelihood: -255163.678503
EM: Round [12] log likelihood: -255163.020091
EM: Round [13] log likelihood: -255162.502935
EM: Round [14] log likelihood: -255162.088982
EM: Round [15] log likelihood: -255161.752405
EM: Round [16] log likelihood: -255161.475140
EM: Round [17] log likelihood: -255161.244213
EM: Round [18] log likelihood: -255161.050076
EM: Round [19] log likelihood: -255160.885557
EM: Round [20] log likelihood: -255160.745166
EM: Round [21] log likelihood: -255160.624634
EM: Round [22] log likelihood: -255160.520593
EM: Round [23] log likelihood: -255160.430351
EM: Round [24] log likelihood: -255160.351737
EM: Round [25] log likelihood: -255160.282977
EM: Round [26] log likelihood: -255160.222616
EM: Round [27] log likelihood: -255160.169445
EM: Round [28] log likelihood: -255160.122457
EM: Round [29] log likelihood: -255160.080808
EM: Round [30] log likelihood: -255160.043785
EM: Round [31] log likelihood: -255160.010782
EM: Round [32] log likelihood: -255159.981287
EM: Round [33] log likelihood: -255159.954858
EM: Round [34] log likelihood: -255159.931120
EM: Round [35] log likelihood: -255159.909749
EM: Round [36] log likelihood: -255159.890463
EM: Round [37] log likelihood: -255159.873021
EM: Round [38] log likelihood: -255159.857212
EM: Round [39] log likelihood: -255159.842854
EM: Round [40] log likelihood: -255159.829787
EM: Round [41] log likelihood: -255159.817871
EM: Round [42] log likelihood: -255159.806984
EM: Round [43] log likelihood: -255159.797020
EM: Round [44] log likelihood: -255159.787882
EM: Round [45] log likelihood: -255159.779489
EM: Round [46] log likelihood: -255159.771766
EM: Round [47] log likelihood: -255159.764649
EM: Round [48] log likelihood: -255159.758079
EM: Round [49] log likelihood: -255159.752005
EM: Round [50] log likelihood: -255159.746382
EM: Round [51] log likelihood: -255159.741168
EM: Round [52] log likelihood: -255159.736328
EM: Round [53] log likelihood: -255159.731828
EM: Round [54] log likelihood: -255159.727640
EM: Round [55] log likelihood: -255159.723737
EM: Round [56] log likelihood: -255159.720095
EM: Round [57] log likelihood: -255159.716693
EM: Round [58] log likelihood: -255159.713512
EM: Round [59] log likelihood: -255159.710534
EM: Round [60] log likelihood: -255159.707744
EM: Round [61] log likelihood: -255159.705127
EM: Round [62] log likelihood: -255159.702670
EM: Round [63] log likelihood: -255159.700362
EM: Round [64] log likelihood: -255159.698191
EM: Round [65] log likelihood: -255159.696147
EM: Round [66] log likelihood: -255159.694222
EM: Round [67] log likelihood: -255159.692408
EM: Round [68] log likelihood: -255159.690696
EM: Round [69] log likelihood: -255159.689080
EM: Round [70] log likelihood: -255159.687553
EM: Round [71] log likelihood: -255159.686110
EM: Round [72] log likelihood: -255159.684744
EM: Round [73] log likelihood: -255159.683452
EM: Round [74] log likelihood: -255159.682228
EM: Round [75] log likelihood: -255159.681068
EM: Round [76] log likelihood: -255159.679968
EM: Round [77] log likelihood: -255159.678925
EM: Round [78] log likelihood: -255159.677934
EM: Round [79] log likelihood: -255159.676994
EM: Round [80] log likelihood: -255159.676100
EM: Round [81] log likelihood: -255159.675250
EM: Round [82] log likelihood: -255159.674442
EM: Round [83] log likelihood: -255159.673673
EM: Round [84] log likelihood: -255159.672941
EM: Round [85] log likelihood: -255159.672244
EM: Round [86] log likelihood: -255159.671580
EM: Round [87] log likelihood: -255159.670947
EM: Round [88] log likelihood: -255159.670343
EM: Round [89] log likelihood: -255159.669767
EM: Round [90] log likelihood: -255159.669217
EM: Round [91] log likelihood: -255159.668693
EM: Round [92] log likelihood: -255159.668192
EM: Round [93] log likelihood: -255159.667713
EM: Round [94] log likelihood: -255159.667255
EM: Round [95] log likelihood: -255159.666818
EM: Round [96] log likelihood: -255159.666399
EM: Round [97] log likelihood: -255159.665999
EM: Round [98] log likelihood: -255159.665616
EM: Round [99] log likelihood: -255159.665249
EM: Round [100] log likelihood: -255159.664898
EM: Round [101] log likelihood: -255159.664562
EM: Round [102] log likelihood: -255159.664239
EM: Round [103] log likelihood: -255159.663930
EM: Round [104] log likelihood: -255159.663634
EM: Round [105] log likelihood: -255159.663349
EM: Round [106] log likelihood: -255159.663077
EM: Round [107] log likelihood: -255159.662815
EM: Round [108] log likelihood: -255159.662563
EM: Round [109] log likelihood: -255159.662322
EM: Round [110] log likelihood: -255159.662090
EM: Round [111] log likelihood: -255159.661868
EM: Round [112] log likelihood: -255159.661654
EM: Round [113] log likelihood: -255159.661448
EM: Round [114] log likelihood: -255159.661250
EM: Round [115] log likelihood: -255159.661060
EM: Round [116] log likelihood: -255159.660876
EM: Round [117] log likelihood: -255159.660700
EM: Round [118] log likelihood: -255159.660531
EM: Round [119] log likelihood: -255159.660367
EM: Round [120] log likelihood: -255159.660210
EM: Round [121] log likelihood: -255159.660058
EM: Round [122] log likelihood: -255159.659912
EM: Round [123] log likelihood: -255159.659772
EM: Round [124] log likelihood: -255159.659636
EM: Round [125] log likelihood: -255159.659505
EM: Round [126] log likelihood: -255159.659379
EM: Round [127] log likelihood: -255159.659257
EM: Round [128] log likelihood: -255159.659140
EM: Round [129] log likelihood: -255159.659026
EM: Round [130] log likelihood: -255159.658917
EM: Round [131] log likelihood: -255159.658811
EM: Round [132] log likelihood: -255159.658709
EM: Round [133] log likelihood: -255159.658610
EM: Stopping iterations at round 133 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.A6DtlzMNVR/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.A6DtlzMNVR/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.A6DtlzMNVR/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 176316506 > /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.A6DtlzMNVR/ctat_genome_lib_build_dir > /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.A6DtlzMNVR/ctat_genome_lib_build_dir --annotate /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.A6DtlzMNVR/ctat_genome_lib_build_dir
-done, see /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.A6DtlzMNVR/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 1086, filtered: 8907)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.A6DtlzMNVR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.A6DtlzMNVR/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000267790.1]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000278399.1]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000234715.2]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000243753.5]
WARNING, no entry stored in dbm for [ENSG00000181126.13]
WARNING, no entry stored in dbm for [ENSG00000204622.11]
WARNING, no entry stored in dbm for [ENSG00000235290.1]
WARNING, no entry stored in dbm for [ENSG00000284639.1]
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WARNING, no entry stored in dbm for [ENSG00000223508.5]
WARNING, no entry stored in dbm for [ENSG00000225851.1]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000232226.2]
WARNING, no entry stored in dbm for [ENSG00000254632.2]
WARNING, no entry stored in dbm for [ENSG00000255177.2]
WARNING, no entry stored in dbm for [ENSG00000230479.1]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000234793.1]
WARNING, no entry stored in dbm for [ENSG00000272848.2]
WARNING, no entry stored in dbm for [ENSG00000173209.23]
WARNING, no entry stored in dbm for [ENSG00000243980.3]
WARNING, no entry stored in dbm for [ENSG00000263740.2]
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WARNING, no entry stored in dbm for [ENSG00000204623.9]
WARNING, no entry stored in dbm for [ENSG00000228623.6]
WARNING, no entry stored in dbm for [ENSG00000273313.1]
WARNING, no entry stored in dbm for [ENSG00000271699.5]
WARNING, no entry stored in dbm for [ENSG00000224555.3]
WARNING, no entry stored in dbm for [ENSG00000254485.5]
WARNING, no entry stored in dbm for [ENSG00000250764.1]
WARNING, no entry stored in dbm for [ENSG00000269032.1]
WARNING, no entry stored in dbm for [ENSG00000223508.5]
WARNING, no entry stored in dbm for [ENSG00000270495.1]
WARNING, no entry stored in dbm for [ENSG00000286939.1]
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WARNING, no entry stored in dbm for [ENSG00000284707.2]
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WARNING, no entry stored in dbm for [ENSG00000177640.16]
WARNING, no entry stored in dbm for [ENSG00000267871.6]
WARNING, no entry stored in dbm for [ENSG00000216754.2]
WARNING, no entry stored in dbm for [ENSG00000236562.4]
WARNING, no entry stored in dbm for [ENSG00000283103.3]
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WARNING, no entry stored in dbm for [ENSG00000237234.7]
WARNING, no entry stored in dbm for [ENSG00000246273.8]
WARNING, no entry stored in dbm for [ENSG00000262445.3]
WARNING, no entry stored in dbm for [ENSG00000213468.7]
WARNING, no entry stored in dbm for [ENSG00000230807.1]
WARNING, no entry stored in dbm for [ENSG00000261586.2]
WARNING, no entry stored in dbm for [ENSG00000271797.1]
WARNING, no entry stored in dbm for [ENSG00000277159.1]
WARNING, no entry stored in dbm for [ENSG00000261625.1]
WARNING, no entry stored in dbm for [ENSG00000262313.1]
WARNING, no entry stored in dbm for [ENSG00000232600.3]
WARNING, no entry stored in dbm for [ENSG00000227755.1]
WARNING, no entry stored in dbm for [ENSG00000244376.3]
WARNING, no entry stored in dbm for [ENSG00000234911.2]
WARNING, no entry stored in dbm for [ENSG00000226210.3]
WARNING, no entry stored in dbm for [ENSG00000273125.2]
WARNING, no entry stored in dbm for [ENSG00000241316.8]
WARNING, no entry stored in dbm for [ENSG00000068781.21]
WARNING, no entry stored in dbm for [ENSG00000278531.1]
WARNING, no entry stored in dbm for [ENSG00000206633.1]
WARNING, no entry stored in dbm for [ENSG00000175061.18]
WARNING, no entry stored in dbm for [ENSG00000268364.2]
WARNING, no entry stored in dbm for [ENSG00000218537.1]
WARNING, no entry stored in dbm for [ENSG00000215790.8]
WARNING, no entry stored in dbm for [ENSG00000268287.1]
WARNING, no entry stored in dbm for [ENSG00000262801.6]
WARNING, no entry stored in dbm for [ENSG00000266290.1]
WARNING, no entry stored in dbm for [ENSG00000197536.11]
WARNING, no entry stored in dbm for [ENSG00000285887.1]
WARNING, no entry stored in dbm for [ENSG00000284986.1]
WARNING, no entry stored in dbm for [ENSG00000256092.2]
WARNING, no entry stored in dbm for [ENSG00000204959.4]
WARNING, no entry stored in dbm for [ENSG00000257122.5]
WARNING, no entry stored in dbm for [ENSG00000260413.1]
WARNING, no entry stored in dbm for [ENSG00000214331.8]
WARNING, no entry stored in dbm for [ENSG00000232228.1]
WARNING, no entry stored in dbm for [ENSG00000253945.1]
WARNING, no entry stored in dbm for [ENSG00000230559.1]
WARNING, no entry stored in dbm for [ENSG00000238778.1]
WARNING, no entry stored in dbm for [ENSG00000263069.6]
WARNING, no entry stored in dbm for [ENSG00000201875.1]
WARNING, no entry stored in dbm for [ENSG00000200794.1]
WARNING, no entry stored in dbm for [ENSG00000269653.1]
WARNING, no entry stored in dbm for [ENSG00000254722.1]
WARNING, no entry stored in dbm for [ENSG00000237601.1]
WARNING, no entry stored in dbm for [ENSG00000249859.12]
WARNING, no entry stored in dbm for [ENSG00000224729.6]
WARNING, no entry stored in dbm for [ENSG00000176753.5]
WARNING, no entry stored in dbm for [ENSG00000273125.2]
WARNING, no entry stored in dbm for [ENSG00000225470.8]
WARNING, no entry stored in dbm for [ENSG00000262879.6]
WARNING, no entry stored in dbm for [ENSG00000225469.3]
WARNING, no entry stored in dbm for [ENSG00000224086.6]
WARNING, no entry stored in dbm for [ENSG00000196796.5]
WARNING, no entry stored in dbm for [ENSG00000224729.6]
WARNING, no entry stored in dbm for [ENSG00000287433.1]
WARNING, no entry stored in dbm for [ENSG00000230606.11]
WARNING, no entry stored in dbm for [ENSG00000257906.3]
WARNING, no entry stored in dbm for [ENSG00000273125.2]
WARNING, no entry stored in dbm for [ENSG00000260917.1]
WARNING, no entry stored in dbm for [ENSG00000232684.1]
WARNING, no entry stored in dbm for [ENSG00000187621.15]
WARNING, no entry stored in dbm for [ENSG00000255875.2]
WARNING, no entry stored in dbm for [ENSG00000255875.2]
WARNING, no entry stored in dbm for [ENSG00000223891.6]
WARNING, no entry stored in dbm for [ENSG00000259424.1]
WARNING, no entry stored in dbm for [ENSG00000183444.10]
WARNING, no entry stored in dbm for [ENSG00000272449.2]
WARNING, no entry stored in dbm for [ENSG00000232230.1]
WARNING, no entry stored in dbm for [ENSG00000257489.6]
WARNING, no entry stored in dbm for [ENSG00000261824.7]
WARNING, no entry stored in dbm for [ENSG00000206337.12]
WARNING, no entry stored in dbm for [ENSG00000283792.1]
WARNING, no entry stored in dbm for [ENSG00000283426.1]
WARNING, no entry stored in dbm for [ENSG00000288549.1]
WARNING, no entry stored in dbm for [ENSG00000287405.1]
WARNING, no entry stored in dbm for [ENSG00000205361.8]
WARNING, no entry stored in dbm for [ENSG00000198886.2]
WARNING, no entry stored in dbm for [ENSG00000249899.6]
WARNING, no entry stored in dbm for [ENSG00000235989.4]
WARNING, no entry stored in dbm for [ENSG00000236172.7]
WARNING, no entry stored in dbm for [ENSG00000228526.7]
WARNING, no entry stored in dbm for [ENSG00000267519.6]
WARNING, no entry stored in dbm for [ENSG00000270069.1]
WARNING, no entry stored in dbm for [ENSG00000274270.1]
WARNING, no entry stored in dbm for [ENSG00000235848.4]
WARNING, no entry stored in dbm for [ENSG00000255108.1]
WARNING, no entry stored in dbm for [ENSG00000272267.2]
WARNING, no entry stored in dbm for [ENSG00000267278.6]
WARNING, no entry stored in dbm for [ENSG00000248973.3]
WARNING, no entry stored in dbm for [ENSG00000233304.7]
WARNING, no entry stored in dbm for [ENSG00000286295.1]
WARNING, no entry stored in dbm for [ENSG00000247708.8]
WARNING, no entry stored in dbm for [ENSG00000251580.3]
WARNING, no entry stored in dbm for [ENSG00000228159.2]
WARNING, no entry stored in dbm for [ENSG00000234928.1]
WARNING, no entry stored in dbm for [ENSG00000227755.1]
WARNING, no entry stored in dbm for [ENSG00000232100.1]
WARNING, no entry stored in dbm for [ENSG00000255171.7]
WARNING, no entry stored in dbm for [ENSG00000251396.7]
WARNING, no entry stored in dbm for [ENSG00000224259.7]
WARNING, no entry stored in dbm for [ENSG00000233117.4]
WARNING, no entry stored in dbm for [ENSG00000255185.6]
WARNING, no entry stored in dbm for [ENSG00000237854.3]
WARNING, no entry stored in dbm for [ENSG00000277476.1]
WARNING, no entry stored in dbm for [ENSG00000276758.1]
WARNING, no entry stored in dbm for [ENSG00000224729.6]
WARNING, no entry stored in dbm for [ENSG00000255815.3]
WARNING, no entry stored in dbm for [ENSG00000229222.1]
WARNING, no entry stored in dbm for [ENSG00000281344.1]
WARNING, no entry stored in dbm for [ENSG00000260338.2]
WARNING, no entry stored in dbm for [ENSG00000240761.1]
WARNING, no entry stored in dbm for [ENSG00000229880.1]
WARNING, no entry stored in dbm for [ENSG00000183199.6]
WARNING, no entry stored in dbm for [ENSG00000287579.1]
WARNING, no entry stored in dbm for [ENSG00000229251.3]
WARNING, no entry stored in dbm for [ENSG00000179362.14]
WARNING, no entry stored in dbm for [ENSG00000214176.9]
WARNING, no entry stored in dbm for [ENSG00000214433.4]
WARNING, no entry stored in dbm for [ENSG00000249375.8]
WARNING, no entry stored in dbm for [ENSG00000245904.4]
WARNING, no entry stored in dbm for [ENSG00000268218.1]
WARNING, no entry stored in dbm for [ENSG00000118976.5]
WARNING, no entry stored in dbm for [ENSG00000215483.11]
WARNING, no entry stored in dbm for [ENSG00000199568.1]
WARNING, no entry stored in dbm for [ENSG00000247809.9]
WARNING, no entry stored in dbm for [ENSG00000223652.2]
WARNING, no entry stored in dbm for [ENSG00000251602.7]
WARNING, no entry stored in dbm for [ENSG00000231528.3]
WARNING, no entry stored in dbm for [ENSG00000231528.3]
WARNING, no entry stored in dbm for [ENSG00000223566.1]
WARNING, no entry stored in dbm for [ENSG00000229124.7]
WARNING, no entry stored in dbm for [ENSG00000234152.1]
WARNING, no entry stored in dbm for [ENSG00000177359.20]
WARNING, no entry stored in dbm for [ENSG00000278903.3]
WARNING, no entry stored in dbm for [ENSG00000230239.1]
WARNING, no entry stored in dbm for [ENSG00000268287.1]
WARNING, no entry stored in dbm for [ENSG00000257817.2]
WARNING, no entry stored in dbm for [ENSG00000231646.6]
WARNING, no entry stored in dbm for [ENSG00000229358.3]
WARNING, no entry stored in dbm for [ENSG00000221844.2]
WARNING, no entry stored in dbm for [ENSG00000279726.2]
WARNING, no entry stored in dbm for [ENSG00000224533.4]
WARNING, no entry stored in dbm for [ENSG00000254275.6]
WARNING, no entry stored in dbm for [ENSG00000222041.11]
WARNING, no entry stored in dbm for [ENSG00000204745.4]
WARNING, no entry stored in dbm for [ENSG00000280018.4]
WARNING, no entry stored in dbm for [ENSG00000080947.15]
WARNING, no entry stored in dbm for [ENSG00000236008.3]
WARNING, no entry stored in dbm for [ENSG00000168405.17]
WARNING, no entry stored in dbm for [ENSG00000237945.7]
WARNING, no entry stored in dbm for [ENSG00000259755.1]
WARNING, no entry stored in dbm for [ENSG00000204790.9]
WARNING, no entry stored in dbm for [ENSG00000225339.4]
WARNING, no entry stored in dbm for [ENSG00000277449.1]
WARNING, no entry stored in dbm for [ENSG00000223773.7]
WARNING, no entry stored in dbm for [ENSG00000251264.1]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000260693.1]
WARNING, no entry stored in dbm for [ENSG00000236060.2]
WARNING, no entry stored in dbm for [ENSG00000226983.3]
WARNING, no entry stored in dbm for [ENSG00000251209.9]
WARNING, no entry stored in dbm for [ENSG00000204352.4]
WARNING, no entry stored in dbm for [ENSG00000261393.1]
WARNING, no entry stored in dbm for [ENSG00000285756.2]
WARNING, no entry stored in dbm for [ENSG00000283541.1]
WARNING, no entry stored in dbm for [ENSG00000254783.1]
WARNING, no entry stored in dbm for [ENSG00000279649.1]
WARNING, no entry stored in dbm for [ENSG00000224729.6]
WARNING, no entry stored in dbm for [ENSG00000259225.7]
WARNING, no entry stored in dbm for [ENSG00000232800.1]
WARNING, no entry stored in dbm for [ENSG00000224729.6]
WARNING, no entry stored in dbm for [ENSG00000286167.1]
WARNING, no entry stored in dbm for [ENSG00000273986.1]
WARNING, no entry stored in dbm for [ENSG00000257252.6]
WARNING, no entry stored in dbm for [ENSG00000273387.1]
WARNING, no entry stored in dbm for [ENSG00000254765.1]
WARNING, no entry stored in dbm for [ENSG00000218732.1]
WARNING, no entry stored in dbm for [ENSG00000204790.9]
WARNING, no entry stored in dbm for [ENSG00000286961.1]
WARNING, no entry stored in dbm for [ENSG00000255136.3]
WARNING, no entry stored in dbm for [ENSG00000273199.1]
WARNING, no entry stored in dbm for [ENSG00000286536.1]
WARNING, no entry stored in dbm for [ENSG00000261025.1]
WARNING, no entry stored in dbm for [ENSG00000227619.3]
WARNING, no entry stored in dbm for [ENSG00000279631.1]
WARNING, no entry stored in dbm for [ENSG00000272848.2]
WARNING, no entry stored in dbm for [ENSG00000229862.5]
WARNING, no entry stored in dbm for [ENSG00000285646.2]
WARNING, no entry stored in dbm for [ENSG00000285887.1]
WARNING, no entry stored in dbm for [ENSG00000286459.1]
WARNING, no entry stored in dbm for [ENSG00000204745.4]
WARNING, no entry stored in dbm for [ENSG00000266931.2]
WARNING, no entry stored in dbm for [ENSG00000188460.4]
WARNING, no entry stored in dbm for [ENSG00000247151.7]
WARNING, no entry stored in dbm for [ENSG00000231668.2]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000286830.1]
WARNING, no entry stored in dbm for [ENSG00000250999.2]
WARNING, no entry stored in dbm for [ENSG00000214135.8]
WARNING, no entry stored in dbm for [ENSG00000282692.1]
WARNING, no entry stored in dbm for [ENSG00000286619.1]
WARNING, no entry stored in dbm for [ENSG00000286619.1]
WARNING, no entry stored in dbm for [ENSG00000277511.1]
WARNING, no entry stored in dbm for [ENSG00000250049.7]
WARNING, no entry stored in dbm for [ENSG00000248376.2]
WARNING, no entry stored in dbm for [ENSG00000213661.3]
WARNING, no entry stored in dbm for [ENSG00000251314.2]
WARNING, no entry stored in dbm for [ENSG00000254035.1]
WARNING, no entry stored in dbm for [ENSG00000259727.1]
WARNING, no entry stored in dbm for [ENSG00000228981.3]
WARNING, no entry stored in dbm for [ENSG00000287931.1]
WARNING, no entry stored in dbm for [ENSG00000248126.1]
WARNING, no entry stored in dbm for [ENSG00000266283.1]
WARNING, no entry stored in dbm for [ENSG00000287105.1]
WARNING, no entry stored in dbm for [ENSG00000234129.8]
WARNING, no entry stored in dbm for [ENSG00000257817.2]
WARNING, no entry stored in dbm for [ENSG00000188002.10]
WARNING, no entry stored in dbm for [ENSG00000256694.1]
WARNING, no entry stored in dbm for [ENSG00000232386.9]
WARNING, no entry stored in dbm for [ENSG00000286207.1]
WARNING, no entry stored in dbm for [ENSG00000268636.1]
WARNING, no entry stored in dbm for [ENSG00000270504.1]
WARNING, no entry stored in dbm for [ENSG00000269025.2]
WARNING, no entry stored in dbm for [ENSG00000270087.5]
WARNING, no entry stored in dbm for [ENSG00000267345.1]
WARNING, no entry stored in dbm for [ENSG00000238045.9]
WARNING, no entry stored in dbm for [ENSG00000214331.8]
WARNING, no entry stored in dbm for [ENSG00000273557.1]
WARNING, no entry stored in dbm for [ENSG00000253955.2]
WARNING, no entry stored in dbm for [ENSG00000270453.1]
WARNING, no entry stored in dbm for [ENSG00000286739.1]
WARNING, no entry stored in dbm for [ENSG00000277458.1]
WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000265287.2]
WARNING, no entry stored in dbm for [ENSG00000277476.1]
WARNING, no entry stored in dbm for [ENSG00000227757.3]
WARNING, no entry stored in dbm for [ENSG00000248015.7]
WARNING, no entry stored in dbm for [ENSG00000258695.2]
WARNING, no entry stored in dbm for [ENSG00000239556.4]
WARNING, no entry stored in dbm for [ENSG00000239556.4]
WARNING, no entry stored in dbm for [ENSG00000230305.2]


	* STAR-Fusion complete.  See output: /tmp/nxf.A6DtlzMNVR/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)