Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-8900cb43-4dca-49ac-a290-1d176a2e0012/bb/b9dd0d6df869a3d0edd9f161adc899/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/3ea6b5fc6bd982740e4940491f57f6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/3ea6b5fc6bd982740e4940491f57f6/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/226f9ec1dd9c25f2542284136b0449/aih-tih-sc-97c26d-R1_B23WHYVLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/0e29e3b8e811022f139ab91f7b628f/aih-tih-sc-97c26d-R1_B23WHYVLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
H4-16--CD163
starfusion
arriba
HS3ST3B1--ZNF287
starfusion
arriba
HS3ST3B1--LRRC75A
starfusion
arriba
SMG1P1--GAS7
starfusion
PURB--CDHR3
starfusion
MAP2--ERBB4
starfusion
arriba
MPRIP--ASIC2
starfusion
arriba
ULK2--ANKRD30BP1
starfusion
POLR3E--RNA5-8SP2
arriba
POLR3E--BCLAF1P2
arriba
TVP23C--CDRT4
arriba
TXNDC11--AC109495.1
arriba
TXNDC11--AC025277.1
arriba
MPRIP--POLDIP2
arriba
SPNS1--ABCC1
arriba
CRK--AC004253.2
arriba
CRK--COPRS
arriba

  0%|          | 0/17 [00:00<?, ?it/s]
Processing H4-16--CD163:   0%|          | 0/17 [00:00<?, ?it/s]
Processing H4-16--CD163:   6%|▌         | 1/17 [00:00<00:01,  8.90it/s]
Processing HS3ST3B1--ZNF287:   6%|▌         | 1/17 [00:00<00:01,  8.90it/s]
Processing HS3ST3B1--ZNF287:  12%|█▏        | 2/17 [00:00<00:01,  9.18it/s]
Processing HS3ST3B1--LRRC75A:  12%|█▏        | 2/17 [00:00<00:01,  9.18it/s]
Processing HS3ST3B1--LRRC75A:  18%|█▊        | 3/17 [00:00<00:01,  9.31it/s]
Processing SMG1P1--GAS7:  18%|█▊        | 3/17 [00:00<00:01,  9.31it/s]     
Processing SMG1P1--GAS7:  24%|██▎       | 4/17 [00:00<00:01,  9.38it/s]
Processing PURB--CDHR3:  24%|██▎       | 4/17 [00:00<00:01,  9.38it/s] 
Processing PURB--CDHR3:  29%|██▉       | 5/17 [00:00<00:01,  9.42it/s]
Processing MAP2--ERBB4:  29%|██▉       | 5/17 [00:00<00:01,  9.42it/s]
Processing MAP2--ERBB4:  35%|███▌      | 6/17 [00:00<00:01,  9.42it/s]
Processing MPRIP--ASIC2:  35%|███▌      | 6/17 [00:00<00:01,  9.42it/s]
Processing MPRIP--ASIC2:  41%|████      | 7/17 [00:00<00:01,  9.44it/s]
Processing ULK2--ANKRD30BP1:  41%|████      | 7/17 [00:00<00:01,  9.44it/s]
Processing ULK2--ANKRD30BP1:  47%|████▋     | 8/17 [00:00<00:00,  9.45it/s]
Processing POLR3E--RNA5-8SP2:  47%|████▋     | 8/17 [00:00<00:00,  9.45it/s]
Processing POLR3E--RNA5-8SP2:  53%|█████▎    | 9/17 [00:00<00:00,  9.46it/s]
Processing POLR3E--BCLAF1P2:  53%|█████▎    | 9/17 [00:00<00:00,  9.46it/s] 
Processing POLR3E--BCLAF1P2:  59%|█████▉    | 10/17 [00:01<00:00,  9.45it/s]
Processing TVP23C--CDRT4:  59%|█████▉    | 10/17 [00:01<00:00,  9.45it/s]   
Processing TVP23C--CDRT4:  65%|██████▍   | 11/17 [00:01<00:00,  9.45it/s]
Processing TXNDC11--AC109495.1:  65%|██████▍   | 11/17 [00:01<00:00,  9.45it/s]
Processing TXNDC11--AC109495.1:  71%|███████   | 12/17 [00:01<00:00,  9.47it/s]
Processing TXNDC11--AC025277.1:  71%|███████   | 12/17 [00:01<00:00,  9.47it/s]
Processing TXNDC11--AC025277.1:  76%|███████▋  | 13/17 [00:01<00:00,  9.47it/s]
Processing MPRIP--POLDIP2:  76%|███████▋  | 13/17 [00:01<00:00,  9.47it/s]     
Processing MPRIP--POLDIP2:  82%|████████▏ | 14/17 [00:01<00:00,  9.47it/s]
Processing SPNS1--ABCC1:  82%|████████▏ | 14/17 [00:01<00:00,  9.47it/s]  
Processing SPNS1--ABCC1:  88%|████████▊ | 15/17 [00:01<00:00,  9.43it/s]
Processing CRK--AC004253.2:  88%|████████▊ | 15/17 [00:01<00:00,  9.43it/s]
Processing CRK--AC004253.2:  94%|█████████▍| 16/17 [00:01<00:00,  9.45it/s]
Processing CRK--COPRS:  94%|█████████▍| 16/17 [00:01<00:00,  9.45it/s]     
Processing CRK--COPRS: 100%|██████████| 17/17 [00:01<00:00,  9.42it/s]
Processing CRK--COPRS: 100%|██████████| 17/17 [00:01<00:00,  9.42it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory