Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/ff6f471a2567bd706601567e3178a2/aih-tih-sc-027d27-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/4018fbaad34f0a3a15acbeb2d1c94e/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/4018fbaad34f0a3a15acbeb2d1c94e/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
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paired = 256365730
unpaired = 4809982
MERGED PAIRED END READS = 256365730
MATES PROCESSED = 517541442
TOTAL READS = 261175712
DISTINCT READS = 1.08858e+08
DISTINCT COUNTS = 777
MAX COUNT = 1122273
COUNTS OF 1 = 5.20845e+07
MAX TERMS = 100
OBSERVED COUNTS (1122274)
1 52084460
2 25631668
3 13226095
4 7022981
5 3875077
6 2246009
7 1364856
8 872415
9 583606
10 405765
11 292361
12 216749
13 163948
14 127969
15 100828
16 82350
17 67151
18 55452
19 46457
20 39395
21 33815
22 29348
23 25360
24 22110
25 19428
26 17213
27 15229
28 13694
29 12232
30 11101
31 9866
32 9196
33 8346
34 7394
35 6885
36 6077
37 5733
38 5239
39 4980
40 4461
41 4086
42 3957
43 3681
44 3370
45 3192
46 3022
47 2777
48 2631
49 2438
50 2207
51 2177
52 2054
53 1855
54 1834
55 1717
56 1593
57 1498
58 1480
59 1347
60 1328
61 1211
62 1195
63 1156
64 1013
65 1015
66 991
67 859
68 920
69 897
70 821
71 783
72 693
73 701
74 672
75 652
76 616
77 592
78 642
79 566
80 553
81 571
82 514
83 486
84 437
85 433
86 422
87 416
88 402
89 412
90 377
91 363
92 360
93 353
94 314
95 319
96 300
97 287
98 279
99 284
100 289
101 236
102 260
103 241
104 276
105 234
106 213
107 231
108 201
109 198
110 204
111 213
112 195
113 188
114 161
115 185
116 180
117 186
118 181
119 143
120 141
121 136
122 144
123 121
124 169
125 119
126 119
127 147
128 139
129 120
130 101
131 121
132 109
133 107
134 85
135 112
136 104
137 115
138 87
139 91
140 114
141 97
142 92
143 91
144 87
145 85
146 99
147 76
148 89
149 80
150 76
151 67
152 73
153 77
154 70
155 66
156 59
157 57
158 50
159 64
160 65
161 64
162 69
163 64
164 67
165 65
166 53
167 48
168 58
169 51
170 44
171 63
172 46
173 49
174 48
175 42
176 49
177 53
178 39
179 45
180 44
181 46
182 44
183 35
184 43
185 42
186 32
187 42
188 41
189 49
190 45
191 30
192 47
193 40
194 26
195 32
196 29
197 30
198 31
199 39
200 29
201 37
202 32
203 23
204 26
205 18
206 30
207 28
208 34
209 22
210 30
211 29
212 27
213 23
214 32
215 23
216 22
217 21
218 20
219 15
220 21
221 21
222 27
223 12
224 24
225 23
226 20
227 20
228 25
229 14
230 18
231 17
232 22
233 18
234 20
235 24
236 24
237 24
238 12
239 18
240 11
241 22
242 18
243 14
244 22
245 16
246 15
247 23
248 20
249 13
250 14
251 18
252 20
253 14
254 22
255 16
256 13
257 11
258 10
259 19
260 13
261 20
262 7
263 13
264 15
265 16
266 16
267 6
268 13
269 10
270 11
271 15
272 6
273 9
274 13
275 12
276 17
277 14
278 16
279 9
280 11
281 11
282 9
283 9
284 11
285 12
286 7
287 9
288 11
289 11
290 12
291 16
292 5
293 11
294 6
295 13
296 15
297 13
298 8
299 10
300 5
301 8
302 14
303 11
304 3
305 8
306 11
307 12
308 4
309 5
310 6
311 6
312 6
313 6
314 11
315 6
316 8
317 7
318 9
319 12
320 8
321 2
322 3
323 5
324 7
325 7
326 5
327 7
328 6
329 9
330 5
331 5
332 9
333 1
334 3
335 12
336 1
337 4
338 6
339 4
340 6
341 6
342 4
343 5
344 9
345 10
346 3
347 5
348 5
349 4
350 7
351 4
352 3
353 5
354 2
355 3
356 6
357 2
358 4
359 3
361 3
362 4
363 3
364 3
365 4
366 3
367 8
368 1
369 5
370 6
371 3
372 7
373 7
374 5
375 4
376 2
377 5
378 5
379 5
380 3
381 1
382 4
383 2
384 2
385 4
386 3
387 5
388 4
389 4
391 4
392 5
393 3
394 3
395 4
396 5
397 5
398 1
399 5
400 5
401 5
402 3
403 3
404 2
405 1
406 2
407 5
408 4
409 3
410 5
411 5
412 5
413 4
414 3
415 2
416 2
417 9
418 2
419 3
420 5
421 1
422 2
423 3
424 4
425 5
426 5
427 3
428 1
429 3
430 1
431 4
432 5
433 2
434 3
435 4
436 2
437 2
438 2
439 2
440 3
441 5
443 3
444 3
445 3
446 4
447 1
448 1
449 1
450 3
451 4
452 2
453 2
454 3
455 4
456 2
457 4
458 1
459 7
460 3
461 1
462 1
463 2
465 3
466 1
467 1
468 3
469 1
470 1
471 2
472 3
473 1
474 2
475 1
476 3
477 2
478 4
479 2
480 2
481 2
483 3
487 2
488 2
489 3
490 2
491 1
492 1
493 1
494 1
495 5
496 2
497 1
498 3
499 2
500 1
502 4
503 1
505 1
506 1
507 1
508 1
509 2
513 1
514 2
515 1
516 3
517 1
518 2
519 1
520 1
521 4
524 2
526 1
529 1
530 3
532 2
533 1
537 3
538 3
539 1
540 2
541 2
542 3
544 2
545 2
546 1
548 4
549 1
550 1
551 1
552 2
553 2
554 1
555 3
556 2
558 3
559 2
560 1
561 1
562 2
563 1
564 6
565 2
566 2
567 1
569 1
572 2
573 2
574 2
576 1
578 2
580 1
582 2
585 1
586 1
588 1
589 1
590 2
591 3
592 4
593 1
595 1
597 1
598 1
600 2
601 1
603 1
604 1
605 2
607 2
612 2
613 4
615 1
617 1
620 2
621 1
622 2
623 2
624 1
627 1
631 2
632 1
637 1
641 2
643 2
645 1
646 1
648 1
649 1
650 1
652 2
654 3
656 2
659 1
661 4
662 2
663 1
665 2
666 1
667 1
670 2
671 1
672 2
674 1
676 2
678 1
680 2
683 2
684 2
688 2
695 1
699 2
701 1
702 3
704 2
705 1
713 1
716 1
718 1
722 1
724 2
725 1
732 1
733 3
736 1
740 1
744 2
745 1
749 1
752 1
753 1
756 1
761 1
764 1
765 1
766 1
769 1
770 1
773 1
776 1
778 1
779 1
780 1
798 2
805 2
809 1
815 2
819 1
827 1
844 1
852 1
860 1
868 1
882 1
884 1
886 1
888 1
890 1
893 2
894 1
901 1
913 1
934 1
937 1
948 2
959 1
968 1
974 2
976 1
978 1
983 1
990 1
1005 1
1008 1
1019 1
1024 1
1076 1
1078 1
1083 1
1088 1
1091 1
1108 1
1119 1
1121 1
1123 1
1124 1
1132 1
1133 1
1140 1
1141 2
1157 2
1165 1
1170 1
1172 1
1189 1
1190 1
1197 1
1210 1
1234 1
1264 1
1268 1
1271 1
1304 1
1306 1
1308 1
1315 1
1360 1
1376 1
1383 2
1421 1
1432 1
1433 1
1443 1
1455 1
1456 1
1466 1
1477 1
1487 1
1506 1
1510 1
1525 1
1530 1
1545 1
1555 1
1567 1
1581 1
1592 1
1605 1
1609 1
1611 1
1615 1
1620 1
1707 1
1712 1
1713 1
1731 2
1772 1
1786 1
1802 1
1806 1
1819 1
1823 1
1832 1
1837 1
1840 1
1854 1
1873 1
1904 1
1915 1
1923 1
1943 1
1945 1
1948 1
1957 1
2015 1
2042 1
2084 1
2146 1
2148 1
2188 1
2285 1
2322 1
2434 1
2641 1
2663 1
2680 1
2789 1
3035 1
3078 1
3325 1
3486 1
3587 1
3728 1
4728 1
4750 1
6747 1
12600 1
13795 1
48117 1
1122273 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
..._.._......._........_........._........._............................
..................................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]