Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/013786bf60e48795a82bf865049234/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/fb838ef180eb99818a88053833e5fd/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/1fffb548fa4e10c9ec207fcbade05d/aih-tih-sc-176637-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/fb838ef180eb99818a88053833e5fd/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/774463dd25704cd3f82a356f79188a/aih-tih-sc-176637-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 219876310
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-176637-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	219876310
Known Splicing Events:	217275452
Partial Novel Splicing Events:	1259610
Novel Splicing Events:	1268761
Filtered Splicing Events:	72487

Total splicing  Junctions:	530467
Known Splicing Junctions:	275696
Partial Novel Splicing Junctions:	150357
Novel Splicing Junctions:	104414

===================================================================
Create BED file ...
Create Interact file ...