File Info

Filename
aih-tih-sc-1ba302-R1_B23WHYVLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/ffd79a928055941e334b80b2b6d101/aih-tih-sc-1ba302-R1_B23WHYVLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:38:11
                             Started mapping on |	Jun 08 07:40:32
                                    Finished on |	Jun 08 08:34:43
       Mapping speed, Million of reads per hour |	327.60

                          Number of input reads |	295836522
                      Average input read length |	261
                                    UNIQUE READS:
                   Uniquely mapped reads number |	282903694
                        Uniquely mapped reads % |	95.63%
                          Average mapped length |	260.54
                       Number of splices: Total |	358475751
            Number of splices: Annotated (sjdb) |	354898296
                       Number of splices: GT/AG |	355534963
                       Number of splices: GC/AG |	2117648
                       Number of splices: AT/AC |	265900
               Number of splices: Non-canonical |	557240
                      Mismatch rate per base, % |	0.16%
                         Deletion rate per base |	0.00%
                        Deletion average length |	1.09
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.56
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7570491
             % of reads mapped to multiple loci |	2.56%
        Number of reads mapped to too many loci |	294870
             % of reads mapped to too many loci |	0.10%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	585672
       % of reads unmapped: too many mismatches |	0.20%
            Number of reads unmapped: too short |	2760340
                 % of reads unmapped: too short |	0.93%
                Number of reads unmapped: other |	252750
                     % of reads unmapped: other |	0.09%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3518402
                            % of chimeric reads |	1.19%