File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/c4f9249f29a912ca5b4c8d82f165b6/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (aih-tih-sc-070e1d-R1_B23WHYVLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/afd9e5adf4029fe6dd9c25524bee53/aih-tih-sc-070e1d-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/013786bf60e48795a82bf865049234/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/c4f9249f29a912ca5b4c8d82f165b6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/3a851a4d8450274f6ecb0fca9f923e/aih-tih-sc-070e1d-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/c4f9249f29a912ca5b4c8d82f165b6/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 282050656
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-070e1d-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	282050656
Known Splicing Events:	277815742
Partial Novel Splicing Events:	1553621
Novel Splicing Events:	2547269
Filtered Splicing Events:	134024

Total splicing  Junctions:	409172
Known Splicing Junctions:	238442
Partial Novel Splicing Junctions:	92884
Novel Splicing Junctions:	77846

===================================================================
Create BED file ...
Create Interact file ...