AIH curated blacklist: matched 17 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 237
Pass (FILTER=PASS): 23 (9.7%)
Fail (FILTER=FAIL): 214 (90.3%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 17
All 17 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high): 73
confidence_below_min(low<high): 36
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 20
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 16
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 12
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 8
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 8
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 7
confidence_below_min(medium<high);aih_curated_blacklist: 5
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 4
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0);aih_curated_blacklist: 4
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 4
confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 3
total_reads_below_min(3.0<8.0): 2
confidence_below_min(low<high);total_reads_below_min(5.0<8.0);aih_curated_blacklist: 2
Breakdown by confidence:
high: 23 pass, 4 fail (total: 27)
low: 0 pass, 99 fail (total: 99)
medium: 0 pass, 111 fail (total: 111)
Arriba filter: 237 rows -> 23 PASS; wrote aih-tih-sc-75c3a9-R1_B23WHYVLT4_1.arriba.fusions.filtered.tsv and aih-tih-sc-75c3a9-R1_B23WHYVLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: aih-tih-sc-75c3a9-R1_B23WHYVLT4_1.arriba.fusions.filter_summary.txt