Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/2e7e220c0bf6e227b1cb00fc272c8b/aih-tih-sc-c04072-R1_B23WHYVLT4_1.Chimeric.out.junction Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/e11238b63a19cc44f217d18947513d/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/e11238b63a19cc44f217d18947513d/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/98aba44287b949d63bfa2a8a3bad1b/aih-tih-sc-c04072-R1_B23WHYVLT4_1_1.fastp.fastq.gz Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/98aba44287b949d63bfa2a8a3bad1b/aih-tih-sc-c04072-R1_B23WHYVLT4_1_2.fastp.fastq.gz ==> STAGING COMPLETE (6 inputs) -ctat genome lib [/tmp/nxf.rYwPZF3vwO/ctat_genome_lib_build_dir] validates. CMD: mkdir -p /tmp/nxf.rYwPZF3vwO/./_starF_checkpoints CMD: mkdir -p /tmp/nxf.rYwPZF3vwO/./star-fusion.preliminary -sample contains 295502364 rnaseq fragments * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.rYwPZF3vwO/ctat_genome_lib_build_dir -J /tmp/nxf.rYwPZF3vwO/aih-tih-sc-c04072-R1_B23WHYVLT4_1.Chimeric.out.junction -O /tmp/nxf.rYwPZF3vwO/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 -parsing fusion evidence: /tmp/nxf.rYwPZF3vwO/aih-tih-sc-c04072-R1_B23WHYVLT4_1.Chimeric.out.junction -building interval tree based on /tmp/nxf.rYwPZF3vwO/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.10 min). -mapping reads to genes [10000], rate=54545.45/min [20000], rate=60000.00/min [30000], rate=54545.45/min [40000], rate=52173.91/min [50000], rate=52631.58/min [60000], rate=53731.34/min [70000], rate=56756.76/min [80000], rate=57831.33/min [90000], rate=56250.00/min [100000], rate=57142.86/min [110000], rate=58928.57/min [120000], rate=60000.00/min [130000], rate=62400.00/min [140000], rate=63636.36/min [150000], rate=65693.43/min [160000], rate=68085.11/min [170000], rate=70344.83/min [180000], rate=72972.97/min [190000], rate=76000.00/min [200000], rate=76923.08/min [210000], rate=77300.61/min [220000], rate=77647.06/min [230000], rate=77966.10/min [240000], rate=79120.88/min [250000], rate=81521.74/min [260000], rate=83422.46/min [270000], rate=84816.75/min [280000], rate=86153.85/min [290000], rate=84878.05/min [300000], rate=80717.49/min [310000], rate=78481.01/min [320000], rate=76494.02/min [330000], rate=74157.30/min [340000], rate=72340.43/min [350000], rate=70707.07/min [360000], rate=69677.42/min [370000], rate=68944.10/min [380000], rate=67857.14/min [390000], rate=66857.14/min [400000], rate=66481.99/min [410000], rate=66307.28/min [420000], rate=66141.73/min [430000], rate=65316.46/min [440000], rate=65346.53/min [450000], rate=65533.98/min [460000], rate=65558.19/min [470000], rate=64678.90/min [480000], rate=64142.54/min [490000], rate=64052.29/min [500000], rate=63559.32/min [510000], rate=62576.69/min [520000], rate=62027.83/min [530000], rate=62230.92/min [540000], rate=62669.25/min [550000], rate=62857.14/min [560000], rate=62453.53/min [570000], rate=62637.36/min [580000], rate=63043.48/min [590000], rate=62214.41/min [600000], rate=61224.49/min [610000], rate=59415.58/min [620000], rate=58860.76/min [630000], rate=57886.68/min [640000], rate=57313.43/min [650000], rate=56934.31/min [660000], rate=56330.01/min [670000], rate=55833.33/min [680000], rate=54765.10/min [690000], rate=53696.50/min [700000], rate=52963.43/min [710000], rate=52463.05/min [720000], rate=52237.00/min [730000], rate=52267.30/min [740000], rate=52296.82/min [750000], rate=52325.58/min [760000], rate=52293.58/min [770000], rate=52262.44/min [780000], rate=52466.37/min [790000], rate=52549.89/min [800000], rate=52516.41/min [810000], rate=52483.80/min [820000], rate=52508.00/min [830000], rate=52642.71/min [840000], rate=52719.67/min [850000], rate=52631.58/min [860000], rate=52653.06/min [870000], rate=52674.07/min [880000], rate=52747.25/min [890000], rate=52871.29/min [900000], rate=52993.13/min [910000], rate=53009.71/min [920000], rate=52975.05/min [930000], rate=53092.29/min [940000], rate=53007.52/min [950000], rate=52924.79/min [960000], rate=52941.18/min [970000], rate=53005.46/min [980000], rate=53068.59/min [990000], rate=52800.00/min [1000000], rate=52677.79/min [1010000], rate=52787.46/min [1020000], rate=52849.74/min [1030000], rate=53047.21/min [1040000], rate=53242.32/min [1050000], rate=53389.83/min [1060000], rate=53445.38/min [1070000], rate=53678.93/min [1080000], rate=53910.15/min [1090000], rate=54139.07/min [1100000], rate=54320.99/min [1110000], rate=54278.73/min [1120000], rate=53760.00/min [1130000], rate=53301.89/min [1140000], rate=52900.23/min [1150000], rate=52511.42/min [1160000], rate=52213.05/min [1170000], rate=51961.51/min [1180000], rate=51528.38/min [1190000], rate=51366.91/min [1200000], rate=50811.57/min [1210000], rate=50662.94/min [1220000], rate=50587.42/min [1230000], rate=50444.29/min [1240000], rate=50304.26/min [1250000], rate=49800.80/min [1260000], rate=49411.76/min [1270000], rate=49416.34/min [1280000], rate=49293.97/min [1290000], rate=49080.53/min [1300000], rate=48964.22/min [1310000], rate=48911.01/min [1320000], rate=48858.73/min [1330000], rate=48927.04/min [1340000], rate=48609.43/min [1350000], rate=48185.60/min [1360000], rate=48000.00/min [1370000], rate=48042.08/min [1380000], rate=48139.53/min [1390000], rate=48235.97/min [1400000], rate=48303.62/min [1410000], rate=48453.61/min [1420000], rate=48519.36/min [1430000], rate=48556.88/min [1440000], rate=48593.93/min [1450000], rate=48603.35/min [1460000], rate=48666.67/min [1470000], rate=48756.22/min [1480000], rate=48791.21/min [1490000], rate=48852.46/min [1500000], rate=48966.27/min [1510000], rate=49132.32/min [1520000], rate=49217.49/min [1530000], rate=49301.83/min [1540000], rate=49385.36/min [1550000], rate=49468.09/min [1560000], rate=49523.81/min [1570000], rate=49578.95/min [1580000], rate=49633.51/min [1590000], rate=49765.26/min [1600000], rate=49922.00/min [1610000], rate=50051.81/min [1620000], rate=50258.53/min [1630000], rate=50438.37/min [1640000], rate=50539.29/min [1650000], rate=50613.50/min [1660000], rate=50764.53/min [1670000], rate=50811.36/min [1680000], rate=50806.45/min [1690000], rate=50852.56/min [1700000], rate=50974.51/min [1710000], rate=51070.18/min [1720000], rate=51190.48/min [1730000], rate=51309.94/min [1740000], rate=51352.68/min [1750000], rate=51369.86/min [1760000], rate=51361.87/min [1770000], rate=51353.97/min [1780000], rate=51346.15/min [1790000], rate=51436.78/min [1800000], rate=51551.31/min [1810000], rate=51615.97/min [1820000], rate=51704.55/min [1830000], rate=51792.45/min [1840000], rate=51806.66/min [1850000], rate=51869.16/min [1860000], rate=51882.85/min [1870000], rate=51872.40/min [1880000], rate=51909.80/min [1890000], rate=51994.50/min [1900000], rate=52078.57/min [1910000], rate=52138.31/min [1920000], rate=52173.91/min [1930000], rate=52209.20/min [1940000], rate=52173.91/min [1950000], rate=52208.84/min [1960000], rate=52313.17/min [1970000], rate=52370.40/min [1980000], rate=52380.95/min [1990000], rate=52437.42/min [2000000], rate=52470.49/min [2010000], rate=52526.13/min [2020000], rate=52581.34/min [2030000], rate=52613.39/min [2040000], rate=52713.18/min [2050000], rate=52812.37/min [2060000], rate=52865.70/min [2070000], rate=52918.62/min [2080000], rate=52926.21/min [2090000], rate=52978.45/min [2100000], rate=53030.30/min [2110000], rate=53081.76/min [2120000], rate=53155.04/min [2130000], rate=53227.82/min [2140000], rate=53300.12/min [2150000], rate=53349.88/min [2160000], rate=53355.29/min [2170000], rate=53470.23/min [2180000], rate=53540.73/min [2190000], rate=53588.91/min [2200000], rate=53614.95/min [2210000], rate=53684.21/min [2220000], rate=53709.68/min [2230000], rate=53670.28/min [2240000], rate=53674.12/min [2250000], rate=53720.65/min [2260000], rate=53702.97/min [2270000], rate=53727.81/min [2280000], rate=53773.58/min [2290000], rate=53776.91/min [2300000], rate=53780.20/min [2310000], rate=53846.15/min [2320000], rate=53849.13/min [2330000], rate=53893.60/min [2340000], rate=53958.49/min [2350000], rate=54043.69/min [2360000], rate=54066.44/min [2370000], rate=54089.01/min [2380000], rate=54152.45/min [2390000], rate=54215.50/min [2400000], rate=54278.18/min [2410000], rate=54360.90/min [2420000], rate=54443.19/min [2430000], rate=54525.06/min [2440000], rate=54626.87/min [2450000], rate=54748.60/min [2460000], rate=54849.50/min [2470000], rate=54949.94/min [2480000], rate=55049.94/min [2490000], rate=55169.87/min [2500000], rate=55268.98/min