Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/013786bf60e48795a82bf865049234/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/df9bc1745dffb5ec7ba28f9699b061/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/df9bc1745dffb5ec7ba28f9699b061/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/d4e748c570fc5361d6ed1cefa6a876/aih-tih-sc-2f84cc-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/9b48733af574286d2a86e053507593/aih-tih-sc-2f84cc-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 105756038
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-2f84cc-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	105756038
Known Splicing Events:	104180179
Partial Novel Splicing Events:	694846
Novel Splicing Events:	839196
Filtered Splicing Events:	41817

Total splicing  Junctions:	329114
Known Splicing Junctions:	218767
Partial Novel Splicing Junctions:	72079
Novel Splicing Junctions:	38268

===================================================================
Create BED file ...
Create Interact file ...