Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/72436ebb9ac2c7d604654cd976f2b9/aih-tih-sc-3376ed-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/dc67129bd3eb97d58afeddd4934fc2/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/dc67129bd3eb97d58afeddd4934fc2/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-3376ed-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-3376ed-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-3376ed-R1_B23WHYVLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:35:08.101 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:35:08 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-3376ed-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-3376ed-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-3376ed-R1_B23WHYVLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:35:08 GMT 2026] Executing as ?@nf-f1dc67129bd3eb97d58afeddd4934fc2-91ed8-cn7q2 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:35:08 MarkDuplicates Start of doWork freeMemory: 105491640; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:35:08 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:35:08 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:35:12 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 3s. Last read position: chr1:1,267,837
INFO 2026-06-08 08:35:12 MarkDuplicates Tracking 3851 as yet unmatched pairs. 138 records in RAM.
INFO 2026-06-08 08:35:14 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:2,504,573
INFO 2026-06-08 08:35:14 MarkDuplicates Tracking 7442 as yet unmatched pairs. 37 records in RAM.
INFO 2026-06-08 08:35:16 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 1s. Last read position: chr1:6,349,757
INFO 2026-06-08 08:35:16 MarkDuplicates Tracking 12600 as yet unmatched pairs. 1552 records in RAM.
INFO 2026-06-08 08:35:18 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:8,364,812
INFO 2026-06-08 08:35:18 MarkDuplicates Tracking 14566 as yet unmatched pairs. 247 records in RAM.
INFO 2026-06-08 08:35:20 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:9,755,290
INFO 2026-06-08 08:35:20 MarkDuplicates Tracking 17909 as yet unmatched pairs. 559 records in RAM.
INFO 2026-06-08 08:35:22 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:11,838,362
INFO 2026-06-08 08:35:22 MarkDuplicates Tracking 20546 as yet unmatched pairs. 101 records in RAM.
INFO 2026-06-08 08:35:25 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:15,651,741
INFO 2026-06-08 08:35:25 MarkDuplicates Tracking 23781 as yet unmatched pairs. 365 records in RAM.
INFO 2026-06-08 08:35:27 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:16,393,470
INFO 2026-06-08 08:35:27 MarkDuplicates Tracking 27530 as yet unmatched pairs. 1227 records in RAM.
INFO 2026-06-08 08:35:29 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:19,124,670
INFO 2026-06-08 08:35:29 MarkDuplicates Tracking 29726 as yet unmatched pairs. 566 records in RAM.
INFO 2026-06-08 08:35:32 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 3s. Last read position: chr1:20,652,630
INFO 2026-06-08 08:35:32 MarkDuplicates Tracking 35453 as yet unmatched pairs. 2987 records in RAM.
INFO 2026-06-08 08:35:35 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:21,841,599
INFO 2026-06-08 08:35:35 MarkDuplicates Tracking 35895 as yet unmatched pairs. 511 records in RAM.
INFO 2026-06-08 08:35:37 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 2s. Last read position: chr1:23,318,642
INFO 2026-06-08 08:35:37 MarkDuplicates Tracking 41834 as yet unmatched pairs. 3356 records in RAM.
INFO 2026-06-08 08:35:38 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:24,336,512
INFO 2026-06-08 08:35:38 MarkDuplicates Tracking 47734 as yet unmatched pairs. 6449 records in RAM.
INFO 2026-06-08 08:35:41 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 2s. Last read position: chr1:25,900,952
INFO 2026-06-08 08:35:41 MarkDuplicates Tracking 56540 as yet unmatched pairs. 12481 records in RAM.
INFO 2026-06-08 08:35:43 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:26,760,874
INFO 2026-06-08 08:35:43 MarkDuplicates Tracking 47749 as yet unmatched pairs. 995 records in RAM.
INFO 2026-06-08 08:35:46 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:27,113,975
INFO 2026-06-08 08:35:46 MarkDuplicates Tracking 50050 as yet unmatched pairs. 308 records in RAM.
INFO 2026-06-08 08:35:48 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:28,476,279
INFO 2026-06-08 08:35:48 MarkDuplicates Tracking 53894 as yet unmatched pairs. 898 records in RAM.
INFO 2026-06-08 08:35:50 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 2s. Last read position: chr1:29,303,959
INFO 2026-06-08 08:35:50 MarkDuplicates Tracking 57821 as yet unmatched pairs. 1843 records in RAM.
INFO 2026-06-08 08:35:52 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:32,031,629
INFO 2026-06-08 08:35:52 MarkDuplicates Tracking 60303 as yet unmatched pairs. 955 records in RAM.
INFO 2026-06-08 08:35:54 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 2s. Last read position: chr1:32,964,211
INFO 2026-06-08 08:35:54 MarkDuplicates Tracking 63707 as yet unmatched pairs. 1061 records in RAM.
INFO 2026-06-08 08:35:56 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 2s. Last read position: chr1:36,178,685
INFO 2026-06-08 08:35:56 MarkDuplicates Tracking 66004 as yet unmatched pairs. 285 records in RAM.
INFO 2026-06-08 08:35:58 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:39,568,915
INFO 2026-06-08 08:35:58 MarkDuplicates Tracking 69231 as yet unmatched pairs. 589 records in RAM.
INFO 2026-06-08 08:36:00 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:42,929,876
INFO 2026-06-08 08:36:00 MarkDuplicates Tracking 72871 as yet unmatched pairs. 1335 records in RAM.
INFO 2026-06-08 08:36:02 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:43,605,370
INFO 2026-06-08 08:36:02 MarkDuplicates Tracking 75880 as yet unmatched pairs. 921 records in RAM.
INFO 2026-06-08 08:36:04 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 2s. Last read position: chr1:45,511,360
INFO 2026-06-08 08:36:04 MarkDuplicates Tracking 80613 as yet unmatched pairs. 2450 records in RAM.
INFO 2026-06-08 08:36:06 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:48,325,389
INFO 2026-06-08 08:36:06 MarkDuplicates Tracking 81224 as yet unmatched pairs. 202 records in RAM.
INFO 2026-06-08 08:36:08 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 2s. Last read position: chr1:54,200,441
INFO 2026-06-08 08:36:08 MarkDuplicates Tracking 85161 as yet unmatched pairs. 1137 records in RAM.
INFO 2026-06-08 08:36:12 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 3s. Last read position: chr1:62,439,863
INFO 2026-06-08 08:36:12 MarkDuplicates Tracking 89405 as yet unmatched pairs. 1650 records in RAM.
INFO 2026-06-08 08:36:14 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:81,950,207
INFO 2026-06-08 08:36:14 MarkDuplicates Tracking 90726 as yet unmatched pairs. 367 records in RAM.
INFO 2026-06-08 08:36:15 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:93,129,336
INFO 2026-06-08 08:36:15 MarkDuplicates Tracking 93459 as yet unmatched pairs. 300 records in RAM.
INFO 2026-06-08 08:36:17 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:108,752,295
INFO 2026-06-08 08:36:17 MarkDuplicates Tracking 96014 as yet unmatched pairs. 273 records in RAM.
INFO 2026-06-08 08:36:20 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 2s. Last read position: chr1:111,691,407
INFO 2026-06-08 08:36:20 MarkDuplicates Tracking 100067 as yet unmatched pairs. 1314 records in RAM.
INFO 2026-06-08 08:36:22 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:114,734,030
INFO 2026-06-08 08:36:22 MarkDuplicates Tracking 103748 as yet unmatched pairs. 2110 records in RAM.
INFO 2026-06-08 08:36:24 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 2s. Last read position: chr1:119,916,385
INFO 2026-06-08 08:36:24 MarkDuplicates Tracking 105863 as yet unmatched pairs. 1319 records in RAM.
INFO 2026-06-08 08:36:27 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 2s. Last read position: chr1:120,810,412
INFO 2026-06-08 08:36:27 MarkDuplicates Tracking 107275 as yet unmatched pairs. 222 records in RAM.
INFO 2026-06-08 08:36:29 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:146,127,057
INFO 2026-06-08 08:36:29 MarkDuplicates Tracking 108868 as yet unmatched pairs. 245 records in RAM.
INFO 2026-06-08 08:36:30 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:148,116,540
INFO 2026-06-08 08:36:30 MarkDuplicates Tracking 110945 as yet unmatched pairs. 605 records in RAM.
INFO 2026-06-08 08:36:32 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:149,455,454
INFO 2026-06-08 08:36:32 MarkDuplicates Tracking 113167 as yet unmatched pairs. 1652 records in RAM.
INFO 2026-06-08 08:36:33 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:149,832,865
INFO 2026-06-08 08:36:33 MarkDuplicates Tracking 136699 as yet unmatched pairs. 23194 records in RAM.
INFO 2026-06-08 08:36:35 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:149,842,426
INFO 2026-06-08 08:36:35 MarkDuplicates Tracking 127909 as yet unmatched pairs. 10717 records in RAM.
INFO 2026-06-08 08:36:36 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:149,852,712
INFO 2026-06-08 08:36:36 MarkDuplicates Tracking 121222 as yet unmatched pairs. 3024 records in RAM.
INFO 2026-06-08 08:36:38 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:149,886,451
INFO 2026-06-08 08:36:38 MarkDuplicates Tracking 132551 as yet unmatched pairs. 13231 records in RAM.
INFO 2026-06-08 08:36:39 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:150,267,964
INFO 2026-06-08 08:36:39 MarkDuplicates Tracking 128897 as yet unmatched pairs. 6679 records in RAM.
INFO 2026-06-08 08:36:41 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:150,627,546
INFO 2026-06-08 08:36:41 MarkDuplicates Tracking 132159 as yet unmatched pairs. 6978 records in RAM.
INFO 2026-06-08 08:36:43 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:151,290,507
INFO 2026-06-08 08:36:43 MarkDuplicates Tracking 128499 as yet unmatched pairs. 523 records in RAM.
INFO 2026-06-08 08:36:45 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:151,986,100
INFO 2026-06-08 08:36:45 MarkDuplicates Tracking 141217 as yet unmatched pairs. 10242 records in RAM.
INFO 2026-06-08 08:36:47 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 2s. Last read position: chr1:153,607,640
INFO 2026-06-08 08:36:47 MarkDuplicates Tracking 136887 as yet unmatched pairs. 3271 records in RAM.
INFO 2026-06-08 08:36:51 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 3s. Last read position: chr1:153,952,816
INFO 2026-06-08 08:36:51 MarkDuplicates Tracking 137319 as yet unmatched pairs. 850 records in RAM.
INFO 2026-06-08 08:36:53 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 2s. Last read position: chr1:154,170,461
INFO 2026-06-08 08:36:53 MarkDuplicates Tracking 183474 as yet unmatched pairs. 44083 records in RAM.
INFO 2026-06-08 08:36:55 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 2s. Last read position: chr1:154,183,049
INFO 2026-06-08 08:36:55 MarkDuplicates Tracking 142729 as yet unmatched pairs. 659 records in RAM.
INFO 2026-06-08 08:36:57 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 2s. Last read position: chr1:154,602,306
INFO 2026-06-08 08:36:57 MarkDuplicates Tracking 146494 as yet unmatched pairs. 1744 records in RAM.
INFO 2026-06-08 08:36:59 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr1:155,139,959
INFO 2026-06-08 08:36:59 MarkDuplicates Tracking 153907 as yet unmatched pairs. 5856 records in RAM.
INFO 2026-06-08 08:37:01 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:155,190,956
INFO 2026-06-08 08:37:01 MarkDuplicates Tracking 151355 as yet unmatched pairs. 887 records in RAM.
INFO 2026-06-08 08:37:03 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 2s. Last read position: chr1:155,312,312
INFO 2026-06-08 08:37:03 MarkDuplicates Tracking 157530 as yet unmatched pairs. 4319 records in RAM.
INFO 2026-06-08 08:37:05 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 2s. Last read position: chr1:155,746,658
INFO 2026-06-08 08:37:05 MarkDuplicates Tracking 156764 as yet unmatched pairs. 791 records in RAM.
INFO 2026-06-08 08:37:08 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 2s. Last read position: chr1:156,115,180
INFO 2026-06-08 08:37:08 MarkDuplicates Tracking 169861 as yet unmatched pairs. 10334 records in RAM.
INFO 2026-06-08 08:37:10 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 2s. Last read position: chr1:156,136,228
INFO 2026-06-08 08:37:10 MarkDuplicates Tracking 166603 as yet unmatched pairs. 2928 records in RAM.
INFO 2026-06-08 08:37:12 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr1:156,266,223
INFO 2026-06-08 08:37:12 MarkDuplicates Tracking 167757 as yet unmatched pairs. 545 records in RAM.
INFO 2026-06-08 08:37:14 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 2s. Last read position: chr1:156,592,111
INFO 2026-06-08 08:37:14 MarkDuplicates Tracking 170970 as yet unmatched pairs. 818 records in RAM.
INFO 2026-06-08 08:37:16 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr1:159,781,160
INFO 2026-06-08 08:37:16 MarkDuplicates Tracking 175388 as yet unmatched pairs. 2198 records in RAM.
INFO 2026-06-08 08:37:18 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 2s. Last read position: chr1:160,355,914
INFO 2026-06-08 08:37:18 MarkDuplicates Tracking 178385 as yet unmatched pairs. 2221 records in RAM.
INFO 2026-06-08 08:37:20 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr1:161,077,461
INFO 2026-06-08 08:37:20 MarkDuplicates Tracking 181435 as yet unmatched pairs. 2077 records in RAM.
INFO 2026-06-08 08:37:22 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr1:161,607,893
INFO 2026-06-08 08:37:22 MarkDuplicates Tracking 182649 as yet unmatched pairs. 140 records in RAM.
INFO 2026-06-08 08:37:24 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 2s. Last read position: chr1:167,439,352
INFO 2026-06-08 08:37:24 MarkDuplicates Tracking 185576 as yet unmatched pairs. 72 records in RAM.
INFO 2026-06-08 08:37:26 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 2s. Last read position: chr1:172,610,067
INFO 2026-06-08 08:37:26 MarkDuplicates Tracking 188573 as yet unmatched pairs. 280 records in RAM.
INFO 2026-06-08 08:37:29 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 2s. Last read position: chr1:180,836,704
INFO 2026-06-08 08:37:29 MarkDuplicates Tracking 191620 as yet unmatched pairs. 458 records in RAM.
INFO 2026-06-08 08:37:31 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 2s. Last read position: chr1:186,356,331
INFO 2026-06-08 08:37:31 MarkDuplicates Tracking 195521 as yet unmatched pairs. 1482 records in RAM.
INFO 2026-06-08 08:37:33 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 2s. Last read position: chr1:201,983,022
INFO 2026-06-08 08:37:33 MarkDuplicates Tracking 197173 as yet unmatched pairs. 227 records in RAM.
INFO 2026-06-08 08:37:35 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr1:205,321,971
INFO 2026-06-08 08:37:35 MarkDuplicates Tracking 199894 as yet unmatched pairs. 17 records in RAM.
INFO 2026-06-08 08:37:37 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr1:209,796,347
INFO 2026-06-08 08:37:37 MarkDuplicates Tracking 202871 as yet unmatched pairs. 370 records in RAM.
INFO 2026-06-08 08:37:38 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr1:222,712,209
INFO 2026-06-08 08:37:38 MarkDuplicates Tracking 205332 as yet unmatched pairs. 36 records in RAM.
INFO 2026-06-08 08:37:41 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 2s. Last read position: chr1:226,402,359
INFO 2026-06-08 08:37:41 MarkDuplicates Tracking 208341 as yet unmatched pairs. 283 records in RAM.
INFO 2026-06-08 08:37:43 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 2s. Last read position: chr1:232,514,660
INFO 2026-06-08 08:37:43 MarkDuplicates Tracking 211935 as yet unmatched pairs. 375 records in RAM.
INFO 2026-06-08 08:37:45 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 2s. Last read position: chr1:244,856,738
INFO 2026-06-08 08:37:45 MarkDuplicates Tracking 215072 as yet unmatched pairs. 578 records in RAM.
INFO 2026-06-08 08:37:49 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 4s. Last read position: chr2:6,865,034
INFO 2026-06-08 08:37:49 MarkDuplicates Tracking 217905 as yet unmatched pairs. 216315 records in RAM.
INFO 2026-06-08 08:37:51 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 2s. Last read position: chr2:10,123,019
INFO 2026-06-08 08:37:51 MarkDuplicates Tracking 221353 as yet unmatched pairs. 219749 records in RAM.
INFO 2026-06-08 08:37:54 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 2s. Last read position: chr2:20,202,740
INFO 2026-06-08 08:37:54 MarkDuplicates Tracking 228618 as yet unmatched pairs. 227001 records in RAM.
INFO 2026-06-08 08:37:56 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 2s. Last read position: chr2:24,271,850
INFO 2026-06-08 08:37:56 MarkDuplicates Tracking 226646 as yet unmatched pairs. 225014 records in RAM.
INFO 2026-06-08 08:37:59 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 2s. Last read position: chr2:26,283,042
INFO 2026-06-08 08:37:59 MarkDuplicates Tracking 230388 as yet unmatched pairs. 228737 records in RAM.
INFO 2026-06-08 08:38:01 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 2s. Last read position: chr2:27,492,692
INFO 2026-06-08 08:38:01 MarkDuplicates Tracking 232800 as yet unmatched pairs. 231137 records in RAM.
INFO 2026-06-08 08:38:03 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 2s. Last read position: chr2:29,167,531
INFO 2026-06-08 08:38:03 MarkDuplicates Tracking 235906 as yet unmatched pairs. 234229 records in RAM.
INFO 2026-06-08 08:38:05 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,256
INFO 2026-06-08 08:38:05 MarkDuplicates Tracking 312923 as yet unmatched pairs. 227581 records in RAM.
INFO 2026-06-08 08:38:08 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:38:08 MarkDuplicates Tracking 587938 as yet unmatched pairs. 200186 records in RAM.
INFO 2026-06-08 08:38:11 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:38:11 MarkDuplicates Tracking 1221483 as yet unmatched pairs. 136589 records in RAM.
INFO 2026-06-08 08:38:13 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:38:13 MarkDuplicates Tracking 1488768 as yet unmatched pairs. 109621 records in RAM.
INFO 2026-06-08 08:38:14 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:38:14 MarkDuplicates Tracking 1492429 as yet unmatched pairs. 109253 records in RAM.
INFO 2026-06-08 08:38:16 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:33,263,377
INFO 2026-06-08 08:38:16 MarkDuplicates Tracking 1592771 as yet unmatched pairs. 100283 records in RAM.
INFO 2026-06-08 08:38:19 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 3s. Last read position: chr2:37,267,515
INFO 2026-06-08 08:38:19 MarkDuplicates Tracking 1589215 as yet unmatched pairs. 96702 records in RAM.
INFO 2026-06-08 08:38:21 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 2s. Last read position: chr2:43,225,626
INFO 2026-06-08 08:38:21 MarkDuplicates Tracking 1587154 as yet unmatched pairs. 94612 records in RAM.
INFO 2026-06-08 08:38:23 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr2:47,162,548
INFO 2026-06-08 08:38:23 MarkDuplicates Tracking 1593048 as yet unmatched pairs. 100481 records in RAM.
INFO 2026-06-08 08:38:25 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:54,628,198
INFO 2026-06-08 08:38:25 MarkDuplicates Tracking 1581033 as yet unmatched pairs. 88436 records in RAM.
INFO 2026-06-08 08:38:28 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 2s. Last read position: chr2:55,301,879
INFO 2026-06-08 08:38:28 MarkDuplicates Tracking 1576888 as yet unmatched pairs. 84272 records in RAM.
INFO 2026-06-08 08:38:30 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr2:61,493,906
INFO 2026-06-08 08:38:30 MarkDuplicates Tracking 1576167 as yet unmatched pairs. 83525 records in RAM.
INFO 2026-06-08 08:38:31 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr2:65,239,899
INFO 2026-06-08 08:38:31 MarkDuplicates Tracking 1574813 as yet unmatched pairs. 82136 records in RAM.
INFO 2026-06-08 08:38:33 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr2:70,212,724
INFO 2026-06-08 08:38:33 MarkDuplicates Tracking 1569356 as yet unmatched pairs. 76636 records in RAM.
INFO 2026-06-08 08:38:35 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr2:73,230,104
INFO 2026-06-08 08:38:35 MarkDuplicates Tracking 1565994 as yet unmatched pairs. 73234 records in RAM.
INFO 2026-06-08 08:38:37 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr2:74,459,902
INFO 2026-06-08 08:38:37 MarkDuplicates Tracking 1563489 as yet unmatched pairs. 70704 records in RAM.
INFO 2026-06-08 08:38:39 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr2:85,581,576
INFO 2026-06-08 08:38:39 MarkDuplicates Tracking 1561794 as yet unmatched pairs. 68989 records in RAM.
INFO 2026-06-08 08:38:40 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr2:96,193,291
INFO 2026-06-08 08:38:40 MarkDuplicates Tracking 1557942 as yet unmatched pairs. 65107 records in RAM.
INFO 2026-06-08 08:38:42 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr2:98,536,171
INFO 2026-06-08 08:38:42 MarkDuplicates Tracking 1555023 as yet unmatched pairs. 62174 records in RAM.
INFO 2026-06-08 08:38:45 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 2s. Last read position: chr2:102,683,407
INFO 2026-06-08 08:38:45 MarkDuplicates Tracking 1552000 as yet unmatched pairs. 59144 records in RAM.
INFO 2026-06-08 08:38:46 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr2:108,782,659
INFO 2026-06-08 08:38:46 MarkDuplicates Tracking 1550532 as yet unmatched pairs. 57658 records in RAM.
INFO 2026-06-08 08:38:48 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr2:112,086,047
INFO 2026-06-08 08:38:48 MarkDuplicates Tracking 1547963 as yet unmatched pairs. 55073 records in RAM.
INFO 2026-06-08 08:38:49 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr2:119,881,820
INFO 2026-06-08 08:38:49 MarkDuplicates Tracking 1546081 as yet unmatched pairs. 53183 records in RAM.
INFO 2026-06-08 08:38:51 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr2:130,190,541
INFO 2026-06-08 08:38:51 MarkDuplicates Tracking 1544254 as yet unmatched pairs. 51315 records in RAM.
INFO 2026-06-08 08:38:53 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr2:148,765,022
INFO 2026-06-08 08:38:53 MarkDuplicates Tracking 1540205 as yet unmatched pairs. 47223 records in RAM.
INFO 2026-06-08 08:38:54 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr2:159,743,116
INFO 2026-06-08 08:38:54 MarkDuplicates Tracking 1537694 as yet unmatched pairs. 44674 records in RAM.
INFO 2026-06-08 08:38:56 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr2:171,983,265
INFO 2026-06-08 08:38:56 MarkDuplicates Tracking 1534929 as yet unmatched pairs. 41850 records in RAM.
INFO 2026-06-08 08:38:58 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr2:181,929,561
INFO 2026-06-08 08:38:58 MarkDuplicates Tracking 1532300 as yet unmatched pairs. 39198 records in RAM.
INFO 2026-06-08 08:39:00 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 2s. Last read position: chr2:190,436,511
INFO 2026-06-08 08:39:00 MarkDuplicates Tracking 1529652 as yet unmatched pairs. 36527 records in RAM.
INFO 2026-06-08 08:39:02 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr2:201,285,254
INFO 2026-06-08 08:39:02 MarkDuplicates Tracking 1526561 as yet unmatched pairs. 33411 records in RAM.
INFO 2026-06-08 08:39:04 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr2:210,002,666
INFO 2026-06-08 08:39:04 MarkDuplicates Tracking 1524182 as yet unmatched pairs. 31011 records in RAM.
INFO 2026-06-08 08:39:06 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr2:215,365,558
INFO 2026-06-08 08:39:06 MarkDuplicates Tracking 1539764 as yet unmatched pairs. 46559 records in RAM.
INFO 2026-06-08 08:39:08 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr2:215,373,368
INFO 2026-06-08 08:39:08 MarkDuplicates Tracking 1542966 as yet unmatched pairs. 49757 records in RAM.
INFO 2026-06-08 08:39:10 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr2:215,380,941
INFO 2026-06-08 08:39:10 MarkDuplicates Tracking 1544014 as yet unmatched pairs. 50798 records in RAM.
INFO 2026-06-08 08:39:11 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr2:215,391,789
INFO 2026-06-08 08:39:11 MarkDuplicates Tracking 1525219 as yet unmatched pairs. 31993 records in RAM.
INFO 2026-06-08 08:39:13 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr2:215,407,174
INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 1530565 as yet unmatched pairs. 37323 records in RAM.
INFO 2026-06-08 08:39:15 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr2:215,420,785
INFO 2026-06-08 08:39:15 MarkDuplicates Tracking 1516770 as yet unmatched pairs. 23525 records in RAM.
INFO 2026-06-08 08:39:17 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 2s. Last read position: chr2:215,433,439
INFO 2026-06-08 08:39:17 MarkDuplicates Tracking 1519020 as yet unmatched pairs. 25764 records in RAM.
INFO 2026-06-08 08:39:18 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr2:219,182,398
INFO 2026-06-08 08:39:18 MarkDuplicates Tracking 1501756 as yet unmatched pairs. 8488 records in RAM.
INFO 2026-06-08 08:39:20 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr2:231,460,750
INFO 2026-06-08 08:39:20 MarkDuplicates Tracking 1498754 as yet unmatched pairs. 5461 records in RAM.
INFO 2026-06-08 08:39:22 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 2s. Last read position: chr2:240,242,978
INFO 2026-06-08 08:39:22 MarkDuplicates Tracking 1495618 as yet unmatched pairs. 2291 records in RAM.
INFO 2026-06-08 08:39:25 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 2s. Last read position: chr3:9,384,539
INFO 2026-06-08 08:39:25 MarkDuplicates Tracking 1492823 as yet unmatched pairs. 84913 records in RAM.
INFO 2026-06-08 08:39:26 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr3:12,735,579
INFO 2026-06-08 08:39:26 MarkDuplicates Tracking 1489823 as yet unmatched pairs. 81892 records in RAM.
INFO 2026-06-08 08:39:28 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr3:25,615,272
INFO 2026-06-08 08:39:28 MarkDuplicates Tracking 1487717 as yet unmatched pairs. 79737 records in RAM.
INFO 2026-06-08 08:39:30 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr3:33,409,265
INFO 2026-06-08 08:39:30 MarkDuplicates Tracking 1484742 as yet unmatched pairs. 76729 records in RAM.
INFO 2026-06-08 08:39:32 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 2s. Last read position: chr3:39,407,675
INFO 2026-06-08 08:39:32 MarkDuplicates Tracking 1483285 as yet unmatched pairs. 75254 records in RAM.
INFO 2026-06-08 08:39:34 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr3:44,400,538
INFO 2026-06-08 08:39:34 MarkDuplicates Tracking 1478339 as yet unmatched pairs. 70283 records in RAM.
INFO 2026-06-08 08:39:36 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr3:47,417,396
INFO 2026-06-08 08:39:36 MarkDuplicates Tracking 1475719 as yet unmatched pairs. 67653 records in RAM.
INFO 2026-06-08 08:39:38 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr3:48,679,058
INFO 2026-06-08 08:39:38 MarkDuplicates Tracking 1472502 as yet unmatched pairs. 64420 records in RAM.
INFO 2026-06-08 08:39:39 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr3:49,357,464
INFO 2026-06-08 08:39:39 MarkDuplicates Tracking 1473695 as yet unmatched pairs. 65594 records in RAM.
INFO 2026-06-08 08:39:41 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr3:50,070,460
INFO 2026-06-08 08:39:41 MarkDuplicates Tracking 1466343 as yet unmatched pairs. 58232 records in RAM.
INFO 2026-06-08 08:39:43 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr3:52,199,258
INFO 2026-06-08 08:39:43 MarkDuplicates Tracking 1463595 as yet unmatched pairs. 55460 records in RAM.
INFO 2026-06-08 08:39:45 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr3:56,623,810
INFO 2026-06-08 08:39:45 MarkDuplicates Tracking 1460183 as yet unmatched pairs. 52023 records in RAM.
INFO 2026-06-08 08:39:46 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr3:58,395,658
INFO 2026-06-08 08:39:46 MarkDuplicates Tracking 1457219 as yet unmatched pairs. 49038 records in RAM.
INFO 2026-06-08 08:39:48 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr3:78,635,931
INFO 2026-06-08 08:39:48 MarkDuplicates Tracking 1454486 as yet unmatched pairs. 46272 records in RAM.
INFO 2026-06-08 08:39:50 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr3:105,367,372
INFO 2026-06-08 08:39:50 MarkDuplicates Tracking 1453846 as yet unmatched pairs. 45615 records in RAM.
INFO 2026-06-08 08:39:52 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr3:120,396,951
INFO 2026-06-08 08:39:52 MarkDuplicates Tracking 1449840 as yet unmatched pairs. 41593 records in RAM.
INFO 2026-06-08 08:39:53 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr3:124,821,425
INFO 2026-06-08 08:39:53 MarkDuplicates Tracking 1446486 as yet unmatched pairs. 38233 records in RAM.
INFO 2026-06-08 08:39:55 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr3:129,171,511
INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 1445638 as yet unmatched pairs. 37374 records in RAM.
INFO 2026-06-08 08:39:57 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr3:134,486,166
INFO 2026-06-08 08:39:57 MarkDuplicates Tracking 1439884 as yet unmatched pairs. 31605 records in RAM.
INFO 2026-06-08 08:39:59 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr3:148,996,451
INFO 2026-06-08 08:39:59 MarkDuplicates Tracking 1437405 as yet unmatched pairs. 29106 records in RAM.
INFO 2026-06-08 08:40:00 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr3:155,168,595
INFO 2026-06-08 08:40:00 MarkDuplicates Tracking 1436477 as yet unmatched pairs. 28163 records in RAM.
INFO 2026-06-08 08:40:02 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr3:168,010,374
INFO 2026-06-08 08:40:02 MarkDuplicates Tracking 1431438 as yet unmatched pairs. 23097 records in RAM.
INFO 2026-06-08 08:40:04 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr3:172,328,955
INFO 2026-06-08 08:40:04 MarkDuplicates Tracking 1429507 as yet unmatched pairs. 21130 records in RAM.
INFO 2026-06-08 08:40:06 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr3:179,199,744
INFO 2026-06-08 08:40:06 MarkDuplicates Tracking 1428247 as yet unmatched pairs. 19807 records in RAM.
INFO 2026-06-08 08:40:08 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr3:182,829,751
INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 1427291 as yet unmatched pairs. 18830 records in RAM.
INFO 2026-06-08 08:40:11 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 2s. Last read position: chr3:183,153,844
INFO 2026-06-08 08:40:11 MarkDuplicates Tracking 1422796 as yet unmatched pairs. 14323 records in RAM.
INFO 2026-06-08 08:40:12 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr3:184,165,421
INFO 2026-06-08 08:40:12 MarkDuplicates Tracking 1418092 as yet unmatched pairs. 9614 records in RAM.
INFO 2026-06-08 08:40:14 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr3:185,923,882
INFO 2026-06-08 08:40:14 MarkDuplicates Tracking 1415731 as yet unmatched pairs. 7247 records in RAM.
INFO 2026-06-08 08:40:16 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr3:195,725,452
INFO 2026-06-08 08:40:16 MarkDuplicates Tracking 1412887 as yet unmatched pairs. 4379 records in RAM.
INFO 2026-06-08 08:40:17 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr3:195,786,889
INFO 2026-06-08 08:40:17 MarkDuplicates Tracking 1412668 as yet unmatched pairs. 4150 records in RAM.
INFO 2026-06-08 08:40:19 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 2s. Last read position: chr4:124,556
INFO 2026-06-08 08:40:19 MarkDuplicates Tracking 1408721 as yet unmatched pairs. 59411 records in RAM.
INFO 2026-06-08 08:40:21 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr4:1,699,692
INFO 2026-06-08 08:40:21 MarkDuplicates Tracking 1406791 as yet unmatched pairs. 57440 records in RAM.
INFO 2026-06-08 08:40:23 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr4:1,799,474
INFO 2026-06-08 08:40:23 MarkDuplicates Tracking 1402891 as yet unmatched pairs. 53514 records in RAM.
INFO 2026-06-08 08:40:24 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr4:2,238,743
INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 1398600 as yet unmatched pairs. 49209 records in RAM.
INFO 2026-06-08 08:40:26 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr4:6,597,196
INFO 2026-06-08 08:40:26 MarkDuplicates Tracking 1395964 as yet unmatched pairs. 46543 records in RAM.
INFO 2026-06-08 08:40:28 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr4:15,007,396
INFO 2026-06-08 08:40:28 MarkDuplicates Tracking 1392543 as yet unmatched pairs. 43102 records in RAM.
INFO 2026-06-08 08:40:30 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr4:37,861,541
INFO 2026-06-08 08:40:30 MarkDuplicates Tracking 1389625 as yet unmatched pairs. 40154 records in RAM.
INFO 2026-06-08 08:40:31 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr4:42,001,619
INFO 2026-06-08 08:40:31 MarkDuplicates Tracking 1386937 as yet unmatched pairs. 37451 records in RAM.
INFO 2026-06-08 08:40:33 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr4:56,436,253
INFO 2026-06-08 08:40:33 MarkDuplicates Tracking 1383843 as yet unmatched pairs. 34324 records in RAM.
INFO 2026-06-08 08:40:35 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 2s. Last read position: chr4:75,657,694
INFO 2026-06-08 08:40:35 MarkDuplicates Tracking 1381592 as yet unmatched pairs. 32053 records in RAM.
INFO 2026-06-08 08:40:38 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 2s. Last read position: chr4:77,055,360
INFO 2026-06-08 08:40:38 MarkDuplicates Tracking 1385764 as yet unmatched pairs. 36203 records in RAM.
INFO 2026-06-08 08:40:39 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr4:82,867,297
INFO 2026-06-08 08:40:39 MarkDuplicates Tracking 1376553 as yet unmatched pairs. 26961 records in RAM.
INFO 2026-06-08 08:40:42 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 2s. Last read position: chr4:87,132,390
INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 1373184 as yet unmatched pairs. 23576 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr4:99,949,325
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 1372523 as yet unmatched pairs. 22872 records in RAM.
INFO 2026-06-08 08:40:45 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr4:107,989,971
INFO 2026-06-08 08:40:45 MarkDuplicates Tracking 1368733 as yet unmatched pairs. 19061 records in RAM.
INFO 2026-06-08 08:40:47 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr4:119,404,263
INFO 2026-06-08 08:40:47 MarkDuplicates Tracking 1364249 as yet unmatched pairs. 14547 records in RAM.
INFO 2026-06-08 08:40:49 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr4:133,152,423
INFO 2026-06-08 08:40:49 MarkDuplicates Tracking 1361556 as yet unmatched pairs. 11847 records in RAM.
INFO 2026-06-08 08:40:50 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr4:145,903,038
INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 1358926 as yet unmatched pairs. 9189 records in RAM.
INFO 2026-06-08 08:40:52 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr4:153,295,675
INFO 2026-06-08 08:40:52 MarkDuplicates Tracking 1356761 as yet unmatched pairs. 6992 records in RAM.
INFO 2026-06-08 08:40:54 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr4:168,877,976
INFO 2026-06-08 08:40:54 MarkDuplicates Tracking 1354306 as yet unmatched pairs. 4514 records in RAM.
INFO 2026-06-08 08:40:56 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr4:186,609,826
INFO 2026-06-08 08:40:56 MarkDuplicates Tracking 1350867 as yet unmatched pairs. 1054 records in RAM.
INFO 2026-06-08 08:40:58 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 2s. Last read position: chr5:1,488,416
INFO 2026-06-08 08:40:58 MarkDuplicates Tracking 1348390 as yet unmatched pairs. 57425 records in RAM.
INFO 2026-06-08 08:40:59 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr5:14,336,553
INFO 2026-06-08 08:40:59 MarkDuplicates Tracking 1345777 as yet unmatched pairs. 54797 records in RAM.
INFO 2026-06-08 08:41:01 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr5:16,818,032
INFO 2026-06-08 08:41:01 MarkDuplicates Tracking 1341544 as yet unmatched pairs. 50553 records in RAM.
INFO 2026-06-08 08:41:03 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr5:36,608,529
INFO 2026-06-08 08:41:03 MarkDuplicates Tracking 1339288 as yet unmatched pairs. 48252 records in RAM.
INFO 2026-06-08 08:41:05 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr5:43,651,754
INFO 2026-06-08 08:41:05 MarkDuplicates Tracking 1336279 as yet unmatched pairs. 45224 records in RAM.
INFO 2026-06-08 08:41:06 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr5:64,800,255
INFO 2026-06-08 08:41:06 MarkDuplicates Tracking 1333395 as yet unmatched pairs. 42315 records in RAM.
INFO 2026-06-08 08:41:08 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr5:71,109,773
INFO 2026-06-08 08:41:08 MarkDuplicates Tracking 1331042 as yet unmatched pairs. 39951 records in RAM.
INFO 2026-06-08 08:41:10 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr5:77,691,460
INFO 2026-06-08 08:41:10 MarkDuplicates Tracking 1331943 as yet unmatched pairs. 40823 records in RAM.
INFO 2026-06-08 08:41:12 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr5:93,588,169
INFO 2026-06-08 08:41:12 MarkDuplicates Tracking 1325590 as yet unmatched pairs. 34463 records in RAM.
INFO 2026-06-08 08:41:14 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 2s. Last read position: chr5:97,027,787
INFO 2026-06-08 08:41:14 MarkDuplicates Tracking 1323553 as yet unmatched pairs. 32416 records in RAM.
INFO 2026-06-08 08:41:16 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 2s. Last read position: chr5:119,525,282
INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 1320704 as yet unmatched pairs. 29552 records in RAM.
INFO 2026-06-08 08:41:19 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 2s. Last read position: chr5:131,508,099
INFO 2026-06-08 08:41:19 MarkDuplicates Tracking 1317573 as yet unmatched pairs. 26406 records in RAM.
INFO 2026-06-08 08:41:21 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr5:135,571,074
INFO 2026-06-08 08:41:21 MarkDuplicates Tracking 1314688 as yet unmatched pairs. 23507 records in RAM.
INFO 2026-06-08 08:41:22 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr5:140,342,736
INFO 2026-06-08 08:41:22 MarkDuplicates Tracking 1311687 as yet unmatched pairs. 20470 records in RAM.
INFO 2026-06-08 08:41:24 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr5:141,863,882
INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 1309915 as yet unmatched pairs. 18676 records in RAM.
INFO 2026-06-08 08:41:26 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,579
INFO 2026-06-08 08:41:26 MarkDuplicates Tracking 1315846 as yet unmatched pairs. 24596 records in RAM.
INFO 2026-06-08 08:41:27 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr5:157,029,550
INFO 2026-06-08 08:41:27 MarkDuplicates Tracking 1303258 as yet unmatched pairs. 11965 records in RAM.
INFO 2026-06-08 08:41:29 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr5:171,205,574
INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 1300590 as yet unmatched pairs. 9281 records in RAM.
INFO 2026-06-08 08:41:31 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr5:177,210,082
INFO 2026-06-08 08:41:31 MarkDuplicates Tracking 1298082 as yet unmatched pairs. 6773 records in RAM.
INFO 2026-06-08 08:41:32 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr5:179,724,755
INFO 2026-06-08 08:41:32 MarkDuplicates Tracking 1295514 as yet unmatched pairs. 4180 records in RAM.
INFO 2026-06-08 08:41:34 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr5:181,239,580
INFO 2026-06-08 08:41:34 MarkDuplicates Tracking 1292857 as yet unmatched pairs. 1505 records in RAM.
INFO 2026-06-08 08:41:36 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 2s. Last read position: chr6:7,246,962
INFO 2026-06-08 08:41:36 MarkDuplicates Tracking 1288963 as yet unmatched pairs. 69058 records in RAM.
INFO 2026-06-08 08:41:38 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr6:11,768,295
INFO 2026-06-08 08:41:38 MarkDuplicates Tracking 1285524 as yet unmatched pairs. 65604 records in RAM.
INFO 2026-06-08 08:41:40 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr6:26,020,722
INFO 2026-06-08 08:41:40 MarkDuplicates Tracking 1283771 as yet unmatched pairs. 63818 records in RAM.
INFO 2026-06-08 08:41:42 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr6:26,197,107
INFO 2026-06-08 08:41:42 MarkDuplicates Tracking 1281184 as yet unmatched pairs. 61220 records in RAM.
INFO 2026-06-08 08:41:43 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr6:27,146,488
INFO 2026-06-08 08:41:43 MarkDuplicates Tracking 1282040 as yet unmatched pairs. 62057 records in RAM.
INFO 2026-06-08 08:41:45 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr6:27,865,465
INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 1276514 as yet unmatched pairs. 56508 records in RAM.
INFO 2026-06-08 08:41:47 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr6:30,346,488
INFO 2026-06-08 08:41:47 MarkDuplicates Tracking 1271279 as yet unmatched pairs. 51257 records in RAM.
INFO 2026-06-08 08:41:49 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 2s. Last read position: chr6:31,354,251
INFO 2026-06-08 08:41:49 MarkDuplicates Tracking 1271725 as yet unmatched pairs. 51686 records in RAM.
INFO 2026-06-08 08:41:50 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr6:31,815,929
INFO 2026-06-08 08:41:50 MarkDuplicates Tracking 1265729 as yet unmatched pairs. 45686 records in RAM.
INFO 2026-06-08 08:41:52 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr6:31,859,812
INFO 2026-06-08 08:41:52 MarkDuplicates Tracking 1264411 as yet unmatched pairs. 44366 records in RAM.
INFO 2026-06-08 08:41:54 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr6:33,271,484
INFO 2026-06-08 08:41:54 MarkDuplicates Tracking 1260408 as yet unmatched pairs. 40354 records in RAM.
INFO 2026-06-08 08:41:56 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 2s. Last read position: chr6:34,590,550
INFO 2026-06-08 08:41:56 MarkDuplicates Tracking 1257674 as yet unmatched pairs. 37610 records in RAM.
INFO 2026-06-08 08:41:58 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr6:38,174,939
INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 1254198 as yet unmatched pairs. 34104 records in RAM.
INFO 2026-06-08 08:41:59 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr6:43,512,166
INFO 2026-06-08 08:41:59 MarkDuplicates Tracking 1251646 as yet unmatched pairs. 31530 records in RAM.
INFO 2026-06-08 08:42:01 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr6:53,097,742
INFO 2026-06-08 08:42:01 MarkDuplicates Tracking 1248171 as yet unmatched pairs. 28017 records in RAM.
INFO 2026-06-08 08:42:03 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr6:75,256,122
INFO 2026-06-08 08:42:03 MarkDuplicates Tracking 1247472 as yet unmatched pairs. 27293 records in RAM.
INFO 2026-06-08 08:42:05 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr6:89,153,045
INFO 2026-06-08 08:42:05 MarkDuplicates Tracking 1242977 as yet unmatched pairs. 22774 records in RAM.
INFO 2026-06-08 08:42:06 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr6:107,957,886
INFO 2026-06-08 08:42:06 MarkDuplicates Tracking 1239921 as yet unmatched pairs. 19703 records in RAM.
INFO 2026-06-08 08:42:08 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr6:116,120,473
INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 1236943 as yet unmatched pairs. 16707 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr6:135,185,930
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 1236016 as yet unmatched pairs. 15755 records in RAM.
INFO 2026-06-08 08:42:12 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr6:138,334,280
INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 1231434 as yet unmatched pairs. 11164 records in RAM.
INFO 2026-06-08 08:42:13 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr6:143,807,080
INFO 2026-06-08 08:42:13 MarkDuplicates Tracking 1228150 as yet unmatched pairs. 7859 records in RAM.
INFO 2026-06-08 08:42:15 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr6:158,767,036
INFO 2026-06-08 08:42:15 MarkDuplicates Tracking 1227462 as yet unmatched pairs. 7149 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 2s. Last read position: chr6:163,562,004
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 1224663 as yet unmatched pairs. 4331 records in RAM.
INFO 2026-06-08 08:42:20 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 2s. Last read position: chr7:1,486,959
INFO 2026-06-08 08:42:20 MarkDuplicates Tracking 1219167 as yet unmatched pairs. 90573 records in RAM.
INFO 2026-06-08 08:42:21 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr7:5,371,149
INFO 2026-06-08 08:42:21 MarkDuplicates Tracking 1216037 as yet unmatched pairs. 87430 records in RAM.
INFO 2026-06-08 08:42:24 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 2s. Last read position: chr7:5,528,116
INFO 2026-06-08 08:42:24 MarkDuplicates Tracking 1259371 as yet unmatched pairs. 130748 records in RAM.
INFO 2026-06-08 08:42:26 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 2s. Last read position: chr7:5,529,267
INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 1243267 as yet unmatched pairs. 114631 records in RAM.
INFO 2026-06-08 08:42:28 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr7:6,600,025
INFO 2026-06-08 08:42:28 MarkDuplicates Tracking 1205787 as yet unmatched pairs. 77149 records in RAM.
INFO 2026-06-08 08:42:29 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr7:21,428,715
INFO 2026-06-08 08:42:29 MarkDuplicates Tracking 1203362 as yet unmatched pairs. 74706 records in RAM.
INFO 2026-06-08 08:42:31 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr7:26,196,415
INFO 2026-06-08 08:42:31 MarkDuplicates Tracking 1201452 as yet unmatched pairs. 72784 records in RAM.
INFO 2026-06-08 08:42:33 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr7:35,670,261
INFO 2026-06-08 08:42:33 MarkDuplicates Tracking 1198057 as yet unmatched pairs. 69370 records in RAM.
INFO 2026-06-08 08:42:35 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr7:44,386,051
INFO 2026-06-08 08:42:35 MarkDuplicates Tracking 1195205 as yet unmatched pairs. 66492 records in RAM.
INFO 2026-06-08 08:42:36 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr7:55,142,434
INFO 2026-06-08 08:42:36 MarkDuplicates Tracking 1197726 as yet unmatched pairs. 68994 records in RAM.
INFO 2026-06-08 08:42:38 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr7:55,191,754
INFO 2026-06-08 08:42:38 MarkDuplicates Tracking 1195049 as yet unmatched pairs. 66313 records in RAM.
INFO 2026-06-08 08:42:40 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr7:64,521,202
INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 1185981 as yet unmatched pairs. 57239 records in RAM.
INFO 2026-06-08 08:42:42 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr7:72,942,675
INFO 2026-06-08 08:42:42 MarkDuplicates Tracking 1183524 as yet unmatched pairs. 54763 records in RAM.
INFO 2026-06-08 08:42:43 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr7:73,769,375
INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 1185863 as yet unmatched pairs. 57100 records in RAM.
INFO 2026-06-08 08:42:45 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr7:74,194,739
INFO 2026-06-08 08:42:45 MarkDuplicates Tracking 1179906 as yet unmatched pairs. 51124 records in RAM.
INFO 2026-06-08 08:42:46 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 1s. Last read position: chr7:75,418,808
INFO 2026-06-08 08:42:46 MarkDuplicates Tracking 1177062 as yet unmatched pairs. 48269 records in RAM.
INFO 2026-06-08 08:42:48 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr7:76,302,711
INFO 2026-06-08 08:42:48 MarkDuplicates Tracking 1204898 as yet unmatched pairs. 76100 records in RAM.
INFO 2026-06-08 08:42:50 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr7:76,303,809
INFO 2026-06-08 08:42:50 MarkDuplicates Tracking 1207642 as yet unmatched pairs. 78838 records in RAM.
INFO 2026-06-08 08:42:51 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 1s. Last read position: chr7:77,537,579
INFO 2026-06-08 08:42:51 MarkDuplicates Tracking 1166703 as yet unmatched pairs. 37893 records in RAM.
INFO 2026-06-08 08:42:53 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr7:92,077,696
INFO 2026-06-08 08:42:53 MarkDuplicates Tracking 1163946 as yet unmatched pairs. 35123 records in RAM.
INFO 2026-06-08 08:42:55 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr7:94,663,893
INFO 2026-06-08 08:42:55 MarkDuplicates Tracking 1164719 as yet unmatched pairs. 35878 records in RAM.
INFO 2026-06-08 08:42:57 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 2s. Last read position: chr7:99,042,121
INFO 2026-06-08 08:42:57 MarkDuplicates Tracking 1157622 as yet unmatched pairs. 28768 records in RAM.
INFO 2026-06-08 08:42:59 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 1s. Last read position: chr7:100,356,485
INFO 2026-06-08 08:42:59 MarkDuplicates Tracking 1154693 as yet unmatched pairs. 25829 records in RAM.
INFO 2026-06-08 08:43:01 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr7:102,348,009
INFO 2026-06-08 08:43:01 MarkDuplicates Tracking 1151107 as yet unmatched pairs. 22231 records in RAM.
INFO 2026-06-08 08:43:03 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr7:107,917,401
INFO 2026-06-08 08:43:03 MarkDuplicates Tracking 1149520 as yet unmatched pairs. 20639 records in RAM.
INFO 2026-06-08 08:43:04 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr7:116,778,791
INFO 2026-06-08 08:43:04 MarkDuplicates Tracking 1150335 as yet unmatched pairs. 21438 records in RAM.
INFO 2026-06-08 08:43:06 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr7:128,085,729
INFO 2026-06-08 08:43:06 MarkDuplicates Tracking 1147166 as yet unmatched pairs. 18250 records in RAM.
INFO 2026-06-08 08:43:08 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr7:134,449,733
INFO 2026-06-08 08:43:08 MarkDuplicates Tracking 1144040 as yet unmatched pairs. 15101 records in RAM.
INFO 2026-06-08 08:43:10 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr7:138,519,194
INFO 2026-06-08 08:43:10 MarkDuplicates Tracking 1140812 as yet unmatched pairs. 11866 records in RAM.
INFO 2026-06-08 08:43:11 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr7:140,343,493
INFO 2026-06-08 08:43:11 MarkDuplicates Tracking 1135586 as yet unmatched pairs. 6631 records in RAM.
INFO 2026-06-08 08:44:20 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 68s. Last read position: chr7:144,364,675
INFO 2026-06-08 08:44:20 MarkDuplicates Tracking 1132622 as yet unmatched pairs. 3666 records in RAM.
INFO 2026-06-08 08:44:22 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 2s. Last read position: chr7:156,763,669
INFO 2026-06-08 08:44:22 MarkDuplicates Tracking 1129816 as yet unmatched pairs. 847 records in RAM.
INFO 2026-06-08 08:44:25 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 2s. Last read position: chr8:11,845,668
INFO 2026-06-08 08:44:25 MarkDuplicates Tracking 1139442 as yet unmatched pairs. 81591 records in RAM.
INFO 2026-06-08 08:44:27 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr8:18,069,820
INFO 2026-06-08 08:44:27 MarkDuplicates Tracking 1131348 as yet unmatched pairs. 73494 records in RAM.
INFO 2026-06-08 08:44:28 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr8:22,617,422
INFO 2026-06-08 08:44:28 MarkDuplicates Tracking 1121964 as yet unmatched pairs. 64095 records in RAM.
INFO 2026-06-08 08:44:30 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr8:30,066,791
INFO 2026-06-08 08:44:30 MarkDuplicates Tracking 1118395 as yet unmatched pairs. 60503 records in RAM.
INFO 2026-06-08 08:44:32 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr8:38,347,497
INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 1115237 as yet unmatched pairs. 57342 records in RAM.
INFO 2026-06-08 08:44:34 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr8:39,091,264
INFO 2026-06-08 08:44:34 MarkDuplicates Tracking 1114107 as yet unmatched pairs. 56203 records in RAM.
INFO 2026-06-08 08:44:36 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr8:47,837,379
INFO 2026-06-08 08:44:36 MarkDuplicates Tracking 1110476 as yet unmatched pairs. 52562 records in RAM.
INFO 2026-06-08 08:44:37 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr8:58,146,263
INFO 2026-06-08 08:44:37 MarkDuplicates Tracking 1106319 as yet unmatched pairs. 48385 records in RAM.
INFO 2026-06-08 08:44:39 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr8:70,124,037
INFO 2026-06-08 08:44:39 MarkDuplicates Tracking 1105986 as yet unmatched pairs. 48043 records in RAM.
INFO 2026-06-08 08:44:41 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr8:73,292,391
INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 1100668 as yet unmatched pairs. 42713 records in RAM.
INFO 2026-06-08 08:44:43 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr8:93,921,894
INFO 2026-06-08 08:44:43 MarkDuplicates Tracking 1098703 as yet unmatched pairs. 40734 records in RAM.
INFO 2026-06-08 08:44:45 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 2s. Last read position: chr8:100,527,963
INFO 2026-06-08 08:44:45 MarkDuplicates Tracking 1095392 as yet unmatched pairs. 37406 records in RAM.
INFO 2026-06-08 08:44:46 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr8:100,948,617
INFO 2026-06-08 08:44:46 MarkDuplicates Tracking 1097448 as yet unmatched pairs. 39450 records in RAM.
INFO 2026-06-08 08:44:49 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 2s. Last read position: chr8:116,658,834
INFO 2026-06-08 08:44:49 MarkDuplicates Tracking 1091552 as yet unmatched pairs. 33536 records in RAM.
INFO 2026-06-08 08:44:51 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr8:123,799,797
INFO 2026-06-08 08:44:51 MarkDuplicates Tracking 1086979 as yet unmatched pairs. 28950 records in RAM.
INFO 2026-06-08 08:44:53 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr8:133,247,884
INFO 2026-06-08 08:44:53 MarkDuplicates Tracking 1092031 as yet unmatched pairs. 33990 records in RAM.
INFO 2026-06-08 08:44:54 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr8:143,559,520
INFO 2026-06-08 08:44:54 MarkDuplicates Tracking 1081159 as yet unmatched pairs. 23107 records in RAM.
INFO 2026-06-08 08:44:56 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr8:143,808,724
INFO 2026-06-08 08:44:56 MarkDuplicates Tracking 1077045 as yet unmatched pairs. 18982 records in RAM.
INFO 2026-06-08 08:44:58 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,784
INFO 2026-06-08 08:44:58 MarkDuplicates Tracking 1075545 as yet unmatched pairs. 17471 records in RAM.
INFO 2026-06-08 08:44:59 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,888
INFO 2026-06-08 08:44:59 MarkDuplicates Tracking 1076841 as yet unmatched pairs. 18766 records in RAM.
INFO 2026-06-08 08:45:00 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,611
INFO 2026-06-08 08:45:00 MarkDuplicates Tracking 1074460 as yet unmatched pairs. 16381 records in RAM.
INFO 2026-06-08 08:45:01 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr8:143,868,074
INFO 2026-06-08 08:45:01 MarkDuplicates Tracking 1073441 as yet unmatched pairs. 15362 records in RAM.
INFO 2026-06-08 08:45:03 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr8:143,925,635
INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 1067370 as yet unmatched pairs. 9281 records in RAM.
INFO 2026-06-08 08:45:05 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr8:144,276,289
INFO 2026-06-08 08:45:05 MarkDuplicates Tracking 1063508 as yet unmatched pairs. 5402 records in RAM.
INFO 2026-06-08 08:45:06 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr8:144,520,287
INFO 2026-06-08 08:45:06 MarkDuplicates Tracking 1059562 as yet unmatched pairs. 1450 records in RAM.
INFO 2026-06-08 08:45:08 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 2s. Last read position: chr9:2,641,499
INFO 2026-06-08 08:45:08 MarkDuplicates Tracking 1056840 as yet unmatched pairs. 73184 records in RAM.
INFO 2026-06-08 08:45:10 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr9:14,112,926
INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 1060202 as yet unmatched pairs. 76522 records in RAM.
INFO 2026-06-08 08:45:12 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr9:15,478,520
INFO 2026-06-08 08:45:12 MarkDuplicates Tracking 1051423 as yet unmatched pairs. 67736 records in RAM.
INFO 2026-06-08 08:45:14 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr9:26,857,746
INFO 2026-06-08 08:45:14 MarkDuplicates Tracking 1047630 as yet unmatched pairs. 63927 records in RAM.
INFO 2026-06-08 08:45:16 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr9:34,521,424
INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 1044748 as yet unmatched pairs. 61031 records in RAM.
INFO 2026-06-08 08:45:17 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr9:35,829,733
INFO 2026-06-08 08:45:17 MarkDuplicates Tracking 1041314 as yet unmatched pairs. 57585 records in RAM.
INFO 2026-06-08 08:45:19 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr9:69,248,083
INFO 2026-06-08 08:45:19 MarkDuplicates Tracking 1040273 as yet unmatched pairs. 56523 records in RAM.
INFO 2026-06-08 08:45:21 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr9:73,160,360
INFO 2026-06-08 08:45:21 MarkDuplicates Tracking 1047438 as yet unmatched pairs. 63683 records in RAM.
INFO 2026-06-08 08:45:22 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr9:78,031,181
INFO 2026-06-08 08:45:22 MarkDuplicates Tracking 1033537 as yet unmatched pairs. 49767 records in RAM.
INFO 2026-06-08 08:45:25 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 2s. Last read position: chr9:87,703,060
INFO 2026-06-08 08:45:25 MarkDuplicates Tracking 1031676 as yet unmatched pairs. 47905 records in RAM.
INFO 2026-06-08 08:45:26 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr9:93,471,169
INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 1027892 as yet unmatched pairs. 44104 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr9:98,987,321
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 1024959 as yet unmatched pairs. 41131 records in RAM.
INFO 2026-06-08 08:45:30 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr9:109,258,028
INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 1022188 as yet unmatched pairs. 38340 records in RAM.
INFO 2026-06-08 08:45:32 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 2s. Last read position: chr9:114,406,854
INFO 2026-06-08 08:45:32 MarkDuplicates Tracking 1018806 as yet unmatched pairs. 34937 records in RAM.
INFO 2026-06-08 08:45:34 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr9:121,759,902
INFO 2026-06-08 08:45:34 MarkDuplicates Tracking 1015971 as yet unmatched pairs. 32079 records in RAM.
INFO 2026-06-08 08:45:36 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr9:127,311,697
INFO 2026-06-08 08:45:36 MarkDuplicates Tracking 1012829 as yet unmatched pairs. 28931 records in RAM.
INFO 2026-06-08 08:45:37 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr9:128,179,220
INFO 2026-06-08 08:45:37 MarkDuplicates Tracking 1011408 as yet unmatched pairs. 27492 records in RAM.
INFO 2026-06-08 08:45:39 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr9:128,611,791
INFO 2026-06-08 08:45:39 MarkDuplicates Tracking 1008234 as yet unmatched pairs. 24311 records in RAM.
INFO 2026-06-08 08:45:41 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr9:129,147,398
INFO 2026-06-08 08:45:41 MarkDuplicates Tracking 1004423 as yet unmatched pairs. 20488 records in RAM.
INFO 2026-06-08 08:45:43 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr9:131,467,582
INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 1000832 as yet unmatched pairs. 16883 records in RAM.
INFO 2026-06-08 08:45:44 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr9:134,048,191
INFO 2026-06-08 08:45:44 MarkDuplicates Tracking 998414 as yet unmatched pairs. 14460 records in RAM.
INFO 2026-06-08 08:45:46 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr9:136,496,523
INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 995318 as yet unmatched pairs. 11349 records in RAM.
INFO 2026-06-08 08:45:48 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr9:136,942,850
INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 991159 as yet unmatched pairs. 7176 records in RAM.
INFO 2026-06-08 08:45:49 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr9:137,242,900
INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 999603 as yet unmatched pairs. 15604 records in RAM.
INFO 2026-06-08 08:45:52 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 2s. Last read position: chr10:1,007,095
INFO 2026-06-08 08:45:52 MarkDuplicates Tracking 983109 as yet unmatched pairs. 45760 records in RAM.
INFO 2026-06-08 08:45:53 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr10:5,800,656
INFO 2026-06-08 08:45:53 MarkDuplicates Tracking 981723 as yet unmatched pairs. 44364 records in RAM.
INFO 2026-06-08 08:45:55 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr10:13,323,013
INFO 2026-06-08 08:45:55 MarkDuplicates Tracking 977655 as yet unmatched pairs. 40277 records in RAM.
INFO 2026-06-08 08:45:57 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr10:24,584,890
INFO 2026-06-08 08:45:57 MarkDuplicates Tracking 975305 as yet unmatched pairs. 37910 records in RAM.
INFO 2026-06-08 08:45:58 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr10:30,026,398
INFO 2026-06-08 08:45:58 MarkDuplicates Tracking 972305 as yet unmatched pairs. 34899 records in RAM.
INFO 2026-06-08 08:46:00 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr10:32,284,927
INFO 2026-06-08 08:46:00 MarkDuplicates Tracking 970189 as yet unmatched pairs. 32777 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr10:45,825,932
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 966962 as yet unmatched pairs. 29543 records in RAM.
INFO 2026-06-08 08:46:03 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr10:60,792,180
INFO 2026-06-08 08:46:03 MarkDuplicates Tracking 965034 as yet unmatched pairs. 27578 records in RAM.
INFO 2026-06-08 08:46:05 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr10:72,007,845
INFO 2026-06-08 08:46:05 MarkDuplicates Tracking 961576 as yet unmatched pairs. 24106 records in RAM.
INFO 2026-06-08 08:46:07 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr10:77,842,153
INFO 2026-06-08 08:46:07 MarkDuplicates Tracking 959265 as yet unmatched pairs. 21773 records in RAM.
INFO 2026-06-08 08:46:09 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr10:88,851,588
INFO 2026-06-08 08:46:09 MarkDuplicates Tracking 955901 as yet unmatched pairs. 18382 records in RAM.
INFO 2026-06-08 08:46:11 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr10:94,592,475
INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 953413 as yet unmatched pairs. 15869 records in RAM.
INFO 2026-06-08 08:46:12 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr10:100,354,630
INFO 2026-06-08 08:46:12 MarkDuplicates Tracking 953868 as yet unmatched pairs. 16308 records in RAM.
INFO 2026-06-08 08:46:14 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr10:103,603,226
INFO 2026-06-08 08:46:14 MarkDuplicates Tracking 947111 as yet unmatched pairs. 9537 records in RAM.
INFO 2026-06-08 08:46:16 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr10:117,284,072
INFO 2026-06-08 08:46:16 MarkDuplicates Tracking 944605 as yet unmatched pairs. 7022 records in RAM.
INFO 2026-06-08 08:46:17 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr10:122,087,924
INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 941875 as yet unmatched pairs. 4290 records in RAM.
INFO 2026-06-08 08:46:19 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr10:131,945,384
INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 939074 as yet unmatched pairs. 1461 records in RAM.
INFO 2026-06-08 08:46:22 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 3s. Last read position: chr11:499,184
INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 935726 as yet unmatched pairs. 124629 records in RAM.
INFO 2026-06-08 08:46:24 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr11:774,006
INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 932137 as yet unmatched pairs. 121033 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr11:1,753,864
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 945222 as yet unmatched pairs. 134090 records in RAM.
INFO 2026-06-08 08:46:27 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr11:1,883,433
INFO 2026-06-08 08:46:27 MarkDuplicates Tracking 924979 as yet unmatched pairs. 113833 records in RAM.
INFO 2026-06-08 08:46:29 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr11:2,976,043
INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 922129 as yet unmatched pairs. 110943 records in RAM.
INFO 2026-06-08 08:46:31 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr11:6,608,879
INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 918126 as yet unmatched pairs. 106924 records in RAM.
INFO 2026-06-08 08:46:32 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr11:9,586,841
INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 915295 as yet unmatched pairs. 104091 records in RAM.
INFO 2026-06-08 08:46:34 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 2s. Last read position: chr11:13,700,451
INFO 2026-06-08 08:46:34 MarkDuplicates Tracking 913096 as yet unmatched pairs. 101858 records in RAM.
INFO 2026-06-08 08:46:36 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr11:18,402,980
INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 912921 as yet unmatched pairs. 101670 records in RAM.
INFO 2026-06-08 08:46:38 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr11:32,098,490
INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 907410 as yet unmatched pairs. 96138 records in RAM.
INFO 2026-06-08 08:46:39 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr11:35,214,860
INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 903547 as yet unmatched pairs. 92259 records in RAM.
INFO 2026-06-08 08:46:41 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr11:46,762,980
INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 901037 as yet unmatched pairs. 89731 records in RAM.
INFO 2026-06-08 08:46:43 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr11:57,308,812
INFO 2026-06-08 08:46:43 MarkDuplicates Tracking 897714 as yet unmatched pairs. 86400 records in RAM.
INFO 2026-06-08 08:46:44 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:59,192,102
INFO 2026-06-08 08:46:44 MarkDuplicates Tracking 894897 as yet unmatched pairs. 83577 records in RAM.
INFO 2026-06-08 08:46:46 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr11:61,430,149
INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 891895 as yet unmatched pairs. 80571 records in RAM.
INFO 2026-06-08 08:46:48 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr11:62,517,988
INFO 2026-06-08 08:46:48 MarkDuplicates Tracking 890787 as yet unmatched pairs. 79458 records in RAM.
INFO 2026-06-08 08:46:50 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr11:62,522,767
INFO 2026-06-08 08:46:50 MarkDuplicates Tracking 892102 as yet unmatched pairs. 80772 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr11:62,527,474
INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 889201 as yet unmatched pairs. 77869 records in RAM.
INFO 2026-06-08 08:46:53 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr11:62,531,323
INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 884223 as yet unmatched pairs. 72887 records in RAM.
INFO 2026-06-08 08:46:55 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr11:62,608,767
INFO 2026-06-08 08:46:55 MarkDuplicates Tracking 878748 as yet unmatched pairs. 67400 records in RAM.
INFO 2026-06-08 08:46:57 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr11:63,629,373
INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 876189 as yet unmatched pairs. 64829 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr11:64,262,487
INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 872565 as yet unmatched pairs. 61196 records in RAM.
INFO 2026-06-08 08:47:01 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr11:64,911,214
INFO 2026-06-08 08:47:01 MarkDuplicates Tracking 868862 as yet unmatched pairs. 57487 records in RAM.
INFO 2026-06-08 08:47:02 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr11:65,183,127
INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 868316 as yet unmatched pairs. 56939 records in RAM.
INFO 2026-06-08 08:47:04 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr11:65,526,284
INFO 2026-06-08 08:47:04 MarkDuplicates Tracking 863015 as yet unmatched pairs. 51539 records in RAM.
INFO 2026-06-08 08:47:06 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr11:65,634,552
INFO 2026-06-08 08:47:06 MarkDuplicates Tracking 858464 as yet unmatched pairs. 46984 records in RAM.
INFO 2026-06-08 08:47:08 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr11:65,920,955
INFO 2026-06-08 08:47:08 MarkDuplicates Tracking 854904 as yet unmatched pairs. 43410 records in RAM.
INFO 2026-06-08 08:47:10 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr11:66,693,238
INFO 2026-06-08 08:47:10 MarkDuplicates Tracking 852045 as yet unmatched pairs. 40549 records in RAM.
INFO 2026-06-08 08:47:12 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr11:67,401,160
INFO 2026-06-08 08:47:12 MarkDuplicates Tracking 849549 as yet unmatched pairs. 38043 records in RAM.
INFO 2026-06-08 08:47:13 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr11:68,780,687
INFO 2026-06-08 08:47:13 MarkDuplicates Tracking 844917 as yet unmatched pairs. 33394 records in RAM.
INFO 2026-06-08 08:47:15 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr11:72,228,192
INFO 2026-06-08 08:47:15 MarkDuplicates Tracking 842074 as yet unmatched pairs. 30533 records in RAM.
INFO 2026-06-08 08:47:17 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr11:74,345,572
INFO 2026-06-08 08:47:17 MarkDuplicates Tracking 838774 as yet unmatched pairs. 27224 records in RAM.
INFO 2026-06-08 08:47:19 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr11:82,825,018
INFO 2026-06-08 08:47:19 MarkDuplicates Tracking 835844 as yet unmatched pairs. 24278 records in RAM.
INFO 2026-06-08 08:47:20 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr11:95,090,129
INFO 2026-06-08 08:47:20 MarkDuplicates Tracking 833264 as yet unmatched pairs. 21678 records in RAM.
INFO 2026-06-08 08:47:22 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr11:102,206,047
INFO 2026-06-08 08:47:22 MarkDuplicates Tracking 838979 as yet unmatched pairs. 27361 records in RAM.
INFO 2026-06-08 08:47:24 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr11:110,462,356
INFO 2026-06-08 08:47:24 MarkDuplicates Tracking 828030 as yet unmatched pairs. 16405 records in RAM.
INFO 2026-06-08 08:47:25 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr11:118,407,052
INFO 2026-06-08 08:47:25 MarkDuplicates Tracking 827768 as yet unmatched pairs. 16136 records in RAM.
INFO 2026-06-08 08:47:27 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr11:119,096,899
INFO 2026-06-08 08:47:27 MarkDuplicates Tracking 822082 as yet unmatched pairs. 10448 records in RAM.
INFO 2026-06-08 08:47:29 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr11:123,058,252
INFO 2026-06-08 08:47:29 MarkDuplicates Tracking 821140 as yet unmatched pairs. 9493 records in RAM.
INFO 2026-06-08 08:47:30 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr11:126,409,305
INFO 2026-06-08 08:47:30 MarkDuplicates Tracking 816038 as yet unmatched pairs. 4383 records in RAM.
INFO 2026-06-08 08:47:32 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr11:130,199,056
INFO 2026-06-08 08:47:32 MarkDuplicates Tracking 815725 as yet unmatched pairs. 4054 records in RAM.
INFO 2026-06-08 08:47:35 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 2s. Last read position: chr12:2,824,122
INFO 2026-06-08 08:47:35 MarkDuplicates Tracking 810005 as yet unmatched pairs. 91656 records in RAM.
INFO 2026-06-08 08:47:37 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr12:6,390,168
INFO 2026-06-08 08:47:37 MarkDuplicates Tracking 807845 as yet unmatched pairs. 89485 records in RAM.
INFO 2026-06-08 08:47:38 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr12:6,869,299
INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 807280 as yet unmatched pairs. 88907 records in RAM.
INFO 2026-06-08 08:47:40 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr12:8,941,922
INFO 2026-06-08 08:47:40 MarkDuplicates Tracking 801679 as yet unmatched pairs. 83298 records in RAM.
INFO 2026-06-08 08:47:42 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr12:12,908,432
INFO 2026-06-08 08:47:42 MarkDuplicates Tracking 807497 as yet unmatched pairs. 89106 records in RAM.
INFO 2026-06-08 08:47:43 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr12:14,915,497
INFO 2026-06-08 08:47:43 MarkDuplicates Tracking 796303 as yet unmatched pairs. 77900 records in RAM.
INFO 2026-06-08 08:47:45 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr12:27,647,821
INFO 2026-06-08 08:47:45 MarkDuplicates Tracking 794889 as yet unmatched pairs. 76475 records in RAM.
INFO 2026-06-08 08:47:47 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr12:45,347,039
INFO 2026-06-08 08:47:47 MarkDuplicates Tracking 790917 as yet unmatched pairs. 72480 records in RAM.
INFO 2026-06-08 08:47:49 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr12:48,830,529
INFO 2026-06-08 08:47:49 MarkDuplicates Tracking 787634 as yet unmatched pairs. 69188 records in RAM.
INFO 2026-06-08 08:47:50 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,530
INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 786507 as yet unmatched pairs. 68053 records in RAM.
INFO 2026-06-08 08:47:51 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr12:49,272,750
INFO 2026-06-08 08:47:51 MarkDuplicates Tracking 787550 as yet unmatched pairs. 69096 records in RAM.
INFO 2026-06-08 08:47:53 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr12:50,925,365
INFO 2026-06-08 08:47:53 MarkDuplicates Tracking 782321 as yet unmatched pairs. 63860 records in RAM.
INFO 2026-06-08 08:47:55 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr12:52,807,100
INFO 2026-06-08 08:47:55 MarkDuplicates Tracking 781034 as yet unmatched pairs. 62568 records in RAM.
INFO 2026-06-08 08:47:57 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr12:53,285,986
INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 773469 as yet unmatched pairs. 54993 records in RAM.
INFO 2026-06-08 08:47:59 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr12:54,282,606
INFO 2026-06-08 08:47:59 MarkDuplicates Tracking 771092 as yet unmatched pairs. 52601 records in RAM.
INFO 2026-06-08 08:48:01 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr12:56,099,964
INFO 2026-06-08 08:48:01 MarkDuplicates Tracking 768215 as yet unmatched pairs. 49722 records in RAM.
INFO 2026-06-08 08:48:02 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr12:56,181,491
INFO 2026-06-08 08:48:02 MarkDuplicates Tracking 765099 as yet unmatched pairs. 46599 records in RAM.
INFO 2026-06-08 08:48:04 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr12:56,664,366
INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 768528 as yet unmatched pairs. 50024 records in RAM.
INFO 2026-06-08 08:48:06 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr12:57,098,888
INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 763886 as yet unmatched pairs. 45365 records in RAM.
INFO 2026-06-08 08:48:08 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 2s. Last read position: chr12:57,235,765
INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 756116 as yet unmatched pairs. 37594 records in RAM.
INFO 2026-06-08 08:48:11 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 2s. Last read position: chr12:57,719,027
INFO 2026-06-08 08:48:11 MarkDuplicates Tracking 755046 as yet unmatched pairs. 36513 records in RAM.
INFO 2026-06-08 08:48:12 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr12:64,431,762
INFO 2026-06-08 08:48:12 MarkDuplicates Tracking 750805 as yet unmatched pairs. 32260 records in RAM.
INFO 2026-06-08 08:48:14 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr12:68,710,058
INFO 2026-06-08 08:48:14 MarkDuplicates Tracking 748225 as yet unmatched pairs. 29673 records in RAM.
INFO 2026-06-08 08:48:16 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr12:68,835,860
INFO 2026-06-08 08:48:16 MarkDuplicates Tracking 760786 as yet unmatched pairs. 42230 records in RAM.
INFO 2026-06-08 08:48:18 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr12:69,598,359
INFO 2026-06-08 08:48:18 MarkDuplicates Tracking 742945 as yet unmatched pairs. 24372 records in RAM.
INFO 2026-06-08 08:48:19 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr12:89,459,629
INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 739653 as yet unmatched pairs. 21072 records in RAM.
INFO 2026-06-08 08:48:21 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr12:98,533,326
INFO 2026-06-08 08:48:21 MarkDuplicates Tracking 739244 as yet unmatched pairs. 20650 records in RAM.
INFO 2026-06-08 08:48:23 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr12:106,239,875
INFO 2026-06-08 08:48:23 MarkDuplicates Tracking 734180 as yet unmatched pairs. 15564 records in RAM.
INFO 2026-06-08 08:48:24 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr12:112,185,402
INFO 2026-06-08 08:48:24 MarkDuplicates Tracking 731316 as yet unmatched pairs. 12695 records in RAM.
INFO 2026-06-08 08:48:26 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr12:118,161,852
INFO 2026-06-08 08:48:26 MarkDuplicates Tracking 727886 as yet unmatched pairs. 9259 records in RAM.
INFO 2026-06-08 08:48:28 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr12:122,133,608
INFO 2026-06-08 08:48:28 MarkDuplicates Tracking 724997 as yet unmatched pairs. 6343 records in RAM.
INFO 2026-06-08 08:48:30 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr12:124,913,018
INFO 2026-06-08 08:48:30 MarkDuplicates Tracking 723121 as yet unmatched pairs. 4458 records in RAM.
INFO 2026-06-08 08:48:32 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr12:133,048,067
INFO 2026-06-08 08:48:32 MarkDuplicates Tracking 718901 as yet unmatched pairs. 223 records in RAM.
INFO 2026-06-08 08:48:34 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 2s. Last read position: chr13:25,331,402
INFO 2026-06-08 08:48:34 MarkDuplicates Tracking 716577 as yet unmatched pairs. 24142 records in RAM.
INFO 2026-06-08 08:48:36 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr13:37,028,202
INFO 2026-06-08 08:48:36 MarkDuplicates Tracking 714027 as yet unmatched pairs. 21566 records in RAM.
INFO 2026-06-08 08:48:37 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr13:45,390,307
INFO 2026-06-08 08:48:37 MarkDuplicates Tracking 711246 as yet unmatched pairs. 18768 records in RAM.
INFO 2026-06-08 08:48:39 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr13:60,016,129
INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 708090 as yet unmatched pairs. 15596 records in RAM.
INFO 2026-06-08 08:48:41 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr13:94,711,275
INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 705209 as yet unmatched pairs. 12712 records in RAM.
INFO 2026-06-08 08:48:43 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr13:98,888,523
INFO 2026-06-08 08:48:43 MarkDuplicates Tracking 703479 as yet unmatched pairs. 10972 records in RAM.
INFO 2026-06-08 08:48:44 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr13:110,179,027
INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 699544 as yet unmatched pairs. 7024 records in RAM.
INFO 2026-06-08 08:48:46 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr13:113,309,703
INFO 2026-06-08 08:48:46 MarkDuplicates Tracking 702480 as yet unmatched pairs. 9955 records in RAM.
INFO 2026-06-08 08:48:48 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr13:114,301,887
INFO 2026-06-08 08:48:48 MarkDuplicates Tracking 692851 as yet unmatched pairs. 317 records in RAM.
INFO 2026-06-08 08:48:50 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 2s. Last read position: chr14:21,021,817
INFO 2026-06-08 08:48:50 MarkDuplicates Tracking 695335 as yet unmatched pairs. 65086 records in RAM.
INFO 2026-06-08 08:48:52 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr14:22,876,190
INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 689092 as yet unmatched pairs. 58829 records in RAM.
INFO 2026-06-08 08:48:53 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr14:23,638,965
INFO 2026-06-08 08:48:53 MarkDuplicates Tracking 688703 as yet unmatched pairs. 58431 records in RAM.
INFO 2026-06-08 08:48:55 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr14:24,163,888
INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 684192 as yet unmatched pairs. 53905 records in RAM.
INFO 2026-06-08 08:48:57 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr14:24,431,513
INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 678847 as yet unmatched pairs. 48547 records in RAM.
INFO 2026-06-08 08:48:59 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr14:34,712,971
INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 676044 as yet unmatched pairs. 45741 records in RAM.
INFO 2026-06-08 08:49:00 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr14:49,618,847
INFO 2026-06-08 08:49:00 MarkDuplicates Tracking 674552 as yet unmatched pairs. 44223 records in RAM.
INFO 2026-06-08 08:49:02 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr14:53,950,858
INFO 2026-06-08 08:49:02 MarkDuplicates Tracking 669969 as yet unmatched pairs. 39599 records in RAM.
INFO 2026-06-08 08:49:04 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 2s. Last read position: chr14:59,324,350
INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 668012 as yet unmatched pairs. 37642 records in RAM.
INFO 2026-06-08 08:49:06 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr14:64,024,993
INFO 2026-06-08 08:49:06 MarkDuplicates Tracking 664954 as yet unmatched pairs. 34580 records in RAM.
INFO 2026-06-08 08:49:08 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr14:64,541,972
INFO 2026-06-08 08:49:08 MarkDuplicates Tracking 662308 as yet unmatched pairs. 31921 records in RAM.
INFO 2026-06-08 08:49:10 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 2s. Last read position: chr14:69,768,150
INFO 2026-06-08 08:49:10 MarkDuplicates Tracking 659738 as yet unmatched pairs. 29328 records in RAM.
INFO 2026-06-08 08:49:12 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr14:74,484,450
INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 660213 as yet unmatched pairs. 29795 records in RAM.
INFO 2026-06-08 08:49:14 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr14:77,026,966
INFO 2026-06-08 08:49:14 MarkDuplicates Tracking 653290 as yet unmatched pairs. 22865 records in RAM.
INFO 2026-06-08 08:49:16 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 2s. Last read position: chr14:90,304,308
INFO 2026-06-08 08:49:16 MarkDuplicates Tracking 650473 as yet unmatched pairs. 20043 records in RAM.
INFO 2026-06-08 08:49:18 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr14:92,816,411
INFO 2026-06-08 08:49:18 MarkDuplicates Tracking 647612 as yet unmatched pairs. 17171 records in RAM.
INFO 2026-06-08 08:49:19 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr14:96,860,676
INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 645493 as yet unmatched pairs. 15051 records in RAM.
INFO 2026-06-08 08:49:21 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr14:102,018,488
INFO 2026-06-08 08:49:21 MarkDuplicates Tracking 642599 as yet unmatched pairs. 12153 records in RAM.
INFO 2026-06-08 08:49:23 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr14:102,944,378
INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 639050 as yet unmatched pairs. 8600 records in RAM.
INFO 2026-06-08 08:49:24 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr14:104,792,638
INFO 2026-06-08 08:49:24 MarkDuplicates Tracking 635837 as yet unmatched pairs. 5381 records in RAM.
INFO 2026-06-08 08:49:26 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr14:105,464,510
INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 631950 as yet unmatched pairs. 1490 records in RAM.
INFO 2026-06-08 08:49:28 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr15:28,230,372
INFO 2026-06-08 08:49:28 MarkDuplicates Tracking 629134 as yet unmatched pairs. 39490 records in RAM.
INFO 2026-06-08 08:49:30 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr15:32,603,724
INFO 2026-06-08 08:49:30 MarkDuplicates Tracking 626678 as yet unmatched pairs. 37027 records in RAM.
INFO 2026-06-08 08:49:31 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr15:34,529,734
INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 624117 as yet unmatched pairs. 34465 records in RAM.
INFO 2026-06-08 08:49:33 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr15:40,856,062
INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 626967 as yet unmatched pairs. 37303 records in RAM.
INFO 2026-06-08 08:49:35 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr15:42,775,390
INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 618338 as yet unmatched pairs. 28660 records in RAM.
INFO 2026-06-08 08:49:36 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr15:44,715,554
INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 618486 as yet unmatched pairs. 28803 records in RAM.
INFO 2026-06-08 08:49:38 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr15:56,919,914
INFO 2026-06-08 08:49:38 MarkDuplicates Tracking 613793 as yet unmatched pairs. 24104 records in RAM.
INFO 2026-06-08 08:49:40 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr15:60,361,004
INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 614387 as yet unmatched pairs. 24696 records in RAM.
INFO 2026-06-08 08:49:41 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr15:65,624,994
INFO 2026-06-08 08:49:41 MarkDuplicates Tracking 607143 as yet unmatched pairs. 17440 records in RAM.
INFO 2026-06-08 08:49:43 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr15:72,207,241
INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 605961 as yet unmatched pairs. 16246 records in RAM.
INFO 2026-06-08 08:49:45 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr15:75,482,885
INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 601131 as yet unmatched pairs. 11401 records in RAM.
INFO 2026-06-08 08:49:47 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr15:82,521,849
INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 598224 as yet unmatched pairs. 8490 records in RAM.
INFO 2026-06-08 08:49:48 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr15:89,412,829
INFO 2026-06-08 08:49:48 MarkDuplicates Tracking 595385 as yet unmatched pairs. 5642 records in RAM.
INFO 2026-06-08 08:49:50 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr15:92,163,354
INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 592258 as yet unmatched pairs. 2511 records in RAM.
INFO 2026-06-08 08:49:52 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 2s. Last read position: chr16:89,807
INFO 2026-06-08 08:49:52 MarkDuplicates Tracking 589909 as yet unmatched pairs. 84688 records in RAM.
INFO 2026-06-08 08:49:54 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:1,220,421
INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 585605 as yet unmatched pairs. 80378 records in RAM.
INFO 2026-06-08 08:49:55 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr16:2,065,613
INFO 2026-06-08 08:49:55 MarkDuplicates Tracking 582103 as yet unmatched pairs. 76860 records in RAM.
INFO 2026-06-08 08:49:57 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr16:2,561,729
INFO 2026-06-08 08:49:57 MarkDuplicates Tracking 578515 as yet unmatched pairs. 73272 records in RAM.
INFO 2026-06-08 08:49:59 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr16:2,971,177
INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 577077 as yet unmatched pairs. 71833 records in RAM.
INFO 2026-06-08 08:50:00 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr16:4,114,559
INFO 2026-06-08 08:50:00 MarkDuplicates Tracking 572314 as yet unmatched pairs. 67068 records in RAM.
INFO 2026-06-08 08:50:02 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr16:8,642,090
INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 568669 as yet unmatched pairs. 63420 records in RAM.
INFO 2026-06-08 08:50:04 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr16:14,604,168
INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 566462 as yet unmatched pairs. 61209 records in RAM.
INFO 2026-06-08 08:50:05 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr16:15,138,819
INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 564336 as yet unmatched pairs. 59080 records in RAM.
INFO 2026-06-08 08:50:07 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr16:17,259,070
INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 563361 as yet unmatched pairs. 58095 records in RAM.
INFO 2026-06-08 08:50:08 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr16:18,784,815
INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 565550 as yet unmatched pairs. 60284 records in RAM.
INFO 2026-06-08 08:50:09 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr16:21,404,026
INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 559470 as yet unmatched pairs. 54199 records in RAM.
INFO 2026-06-08 08:50:11 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr16:21,901,599
INFO 2026-06-08 08:50:11 MarkDuplicates Tracking 557670 as yet unmatched pairs. 52393 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr16:23,475,037
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 556835 as yet unmatched pairs. 51556 records in RAM.
INFO 2026-06-08 08:50:14 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr16:28,477,762
INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 554380 as yet unmatched pairs. 49087 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr16:29,443,433
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 552518 as yet unmatched pairs. 47224 records in RAM.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr16:29,808,223
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 551320 as yet unmatched pairs. 46026 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr16:30,070,189
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 547698 as yet unmatched pairs. 42400 records in RAM.
INFO 2026-06-08 08:50:20 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr16:30,429,130
INFO 2026-06-08 08:50:20 MarkDuplicates Tracking 543058 as yet unmatched pairs. 37752 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr16:31,091,232
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 545857 as yet unmatched pairs. 40549 records in RAM.
INFO 2026-06-08 08:50:23 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr16:31,191,396
INFO 2026-06-08 08:50:23 MarkDuplicates Tracking 539945 as yet unmatched pairs. 34635 records in RAM.
INFO 2026-06-08 08:50:25 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr16:53,156,507
INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 534793 as yet unmatched pairs. 29481 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr16:57,759,712
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 531407 as yet unmatched pairs. 26090 records in RAM.
INFO 2026-06-08 08:50:28 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr16:67,195,965
INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 528427 as yet unmatched pairs. 23110 records in RAM.
INFO 2026-06-08 08:50:30 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr16:68,275,156
INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 524930 as yet unmatched pairs. 19609 records in RAM.
INFO 2026-06-08 08:50:32 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr16:70,042,407
INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 521897 as yet unmatched pairs. 16574 records in RAM.
INFO 2026-06-08 08:50:33 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr16:72,107,703
INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 519441 as yet unmatched pairs. 14113 records in RAM.
INFO 2026-06-08 08:50:35 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr16:80,980,816
INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 517530 as yet unmatched pairs. 12196 records in RAM.
INFO 2026-06-08 08:50:36 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: chr16:85,671,017
INFO 2026-06-08 08:50:36 MarkDuplicates Tracking 512954 as yet unmatched pairs. 7604 records in RAM.
INFO 2026-06-08 08:50:38 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 2s. Last read position: chr16:88,811,611
INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 509539 as yet unmatched pairs. 4181 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr16:89,900,697
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 507029 as yet unmatched pairs. 1665 records in RAM.
INFO 2026-06-08 08:50:43 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 2s. Last read position: chr17:1,364,943
INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 521657 as yet unmatched pairs. 171647 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 2s. Last read position: chr17:2,363,436
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 500103 as yet unmatched pairs. 150088 records in RAM.
INFO 2026-06-08 08:50:47 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 1s. Last read position: chr17:4,890,718
INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 496772 as yet unmatched pairs. 146757 records in RAM.
INFO 2026-06-08 08:50:49 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 1s. Last read position: chr17:7,038,664
INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 493779 as yet unmatched pairs. 143763 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr17:7,462,052
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 491530 as yet unmatched pairs. 141507 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 1s. Last read position: chr17:7,848,667
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 487784 as yet unmatched pairs. 137758 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 1s. Last read position: chr17:13,586,433
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 484596 as yet unmatched pairs. 134567 records in RAM.
INFO 2026-06-08 08:50:56 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 1s. Last read position: chr17:17,138,352
INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 483044 as yet unmatched pairs. 133013 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 1s. Last read position: chr17:18,236,650
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 478720 as yet unmatched pairs. 128687 records in RAM.
INFO 2026-06-08 08:51:00 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 1s. Last read position: chr17:21,183,745
INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 475633 as yet unmatched pairs. 125597 records in RAM.
INFO 2026-06-08 08:51:02 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:52s. Time for last 1,000,000: 1s. Last read position: chr17:28,747,904
INFO 2026-06-08 08:51:02 MarkDuplicates Tracking 473330 as yet unmatched pairs. 123292 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 1s. Last read position: chr17:30,834,726
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 469690 as yet unmatched pairs. 119650 records in RAM.
INFO 2026-06-08 08:51:05 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 1s. Last read position: chr17:35,259,429
INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 467500 as yet unmatched pairs. 117456 records in RAM.
INFO 2026-06-08 08:51:07 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:57s. Time for last 1,000,000: 1s. Last read position: chr17:37,188,322
INFO 2026-06-08 08:51:07 MarkDuplicates Tracking 464386 as yet unmatched pairs. 114341 records in RAM.
INFO 2026-06-08 08:51:08 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 1s. Last read position: chr17:39,072,433
INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 462051 as yet unmatched pairs. 112000 records in RAM.
INFO 2026-06-08 08:51:10 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:16:00s. Time for last 1,000,000: 1s. Last read position: chr17:39,715,316
INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 466570 as yet unmatched pairs. 116518 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:16:02s. Time for last 1,000,000: 1s. Last read position: chr17:39,726,997
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 462546 as yet unmatched pairs. 112494 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:16:04s. Time for last 1,000,000: 2s. Last read position: chr17:40,880,704
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 454253 as yet unmatched pairs. 104200 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 1s. Last read position: chr17:41,505,216
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 464484 as yet unmatched pairs. 114420 records in RAM.
INFO 2026-06-08 08:51:17 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:16:08s. Time for last 1,000,000: 1s. Last read position: chr17:41,765,019
INFO 2026-06-08 08:51:17 MarkDuplicates Tracking 446535 as yet unmatched pairs. 96455 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 1s. Last read position: chr17:42,998,783
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 444368 as yet unmatched pairs. 94281 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:16:11s. Time for last 1,000,000: 1s. Last read position: chr17:44,398,248
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 439573 as yet unmatched pairs. 89486 records in RAM.
INFO 2026-06-08 08:51:22 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:16:13s. Time for last 1,000,000: 1s. Last read position: chr17:46,339,835
INFO 2026-06-08 08:51:22 MarkDuplicates Tracking 437850 as yet unmatched pairs. 87760 records in RAM.
INFO 2026-06-08 08:51:24 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 1s. Last read position: chr17:48,895,154
INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 436969 as yet unmatched pairs. 86879 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:16:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,600
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 441987 as yet unmatched pairs. 91896 records in RAM.
INFO 2026-06-08 08:51:27 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:16:18s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,999
INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 442378 as yet unmatched pairs. 92287 records in RAM.
INFO 2026-06-08 08:51:29 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,600
INFO 2026-06-08 08:51:29 MarkDuplicates Tracking 442762 as yet unmatched pairs. 92662 records in RAM.
INFO 2026-06-08 08:51:31 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:16:21s. Time for last 1,000,000: 1s. Last read position: chr17:50,353,657
INFO 2026-06-08 08:51:31 MarkDuplicates Tracking 422026 as yet unmatched pairs. 71925 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:16:23s. Time for last 1,000,000: 1s. Last read position: chr17:57,105,629
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 418980 as yet unmatched pairs. 68877 records in RAM.
INFO 2026-06-08 08:52:30 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 58s. Last read position: chr17:59,664,858
INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 423318 as yet unmatched pairs. 73215 records in RAM.
INFO 2026-06-08 08:53:45 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 75s. Last read position: chr17:61,391,844
INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 412857 as yet unmatched pairs. 62751 records in RAM.
INFO 2026-06-08 08:53:47 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr17:63,820,382
INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 410029 as yet unmatched pairs. 59909 records in RAM.
INFO 2026-06-08 08:53:49 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 2s. Last read position: chr17:67,347,127
INFO 2026-06-08 08:53:49 MarkDuplicates Tracking 407804 as yet unmatched pairs. 57684 records in RAM.
INFO 2026-06-08 08:53:51 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr17:68,528,891
INFO 2026-06-08 08:53:51 MarkDuplicates Tracking 408021 as yet unmatched pairs. 57900 records in RAM.
INFO 2026-06-08 08:53:53 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr17:75,136,036
INFO 2026-06-08 08:53:53 MarkDuplicates Tracking 404788 as yet unmatched pairs. 54661 records in RAM.
INFO 2026-06-08 08:53:54 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr17:75,630,817
INFO 2026-06-08 08:53:54 MarkDuplicates Tracking 398286 as yet unmatched pairs. 48154 records in RAM.
INFO 2026-06-08 08:53:56 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr17:75,949,759
INFO 2026-06-08 08:53:56 MarkDuplicates Tracking 395705 as yet unmatched pairs. 45561 records in RAM.
INFO 2026-06-08 08:53:58 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr17:76,022,203
INFO 2026-06-08 08:53:58 MarkDuplicates Tracking 393054 as yet unmatched pairs. 42903 records in RAM.
INFO 2026-06-08 08:54:00 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr17:76,806,247
INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 386769 as yet unmatched pairs. 36615 records in RAM.
INFO 2026-06-08 08:54:02 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr17:78,972,130
INFO 2026-06-08 08:54:02 MarkDuplicates Tracking 389610 as yet unmatched pairs. 39450 records in RAM.
INFO 2026-06-08 08:54:03 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr17:80,287,911
INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 388723 as yet unmatched pairs. 38559 records in RAM.
INFO 2026-06-08 08:54:05 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr17:80,346,200
INFO 2026-06-08 08:54:05 MarkDuplicates Tracking 380264 as yet unmatched pairs. 30095 records in RAM.
INFO 2026-06-08 08:54:07 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 2s. Last read position: chr17:80,893,753
INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 374593 as yet unmatched pairs. 24419 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 2s. Last read position: chr17:81,512,165
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 378153 as yet unmatched pairs. 27977 records in RAM.
INFO 2026-06-08 08:54:11 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr17:81,845,650
INFO 2026-06-08 08:54:11 MarkDuplicates Tracking 382808 as yet unmatched pairs. 32631 records in RAM.
INFO 2026-06-08 08:54:13 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr17:81,868,883
INFO 2026-06-08 08:54:13 MarkDuplicates Tracking 367784 as yet unmatched pairs. 17604 records in RAM.
INFO 2026-06-08 08:54:14 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr17:82,056,072
INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 361721 as yet unmatched pairs. 11525 records in RAM.
INFO 2026-06-08 08:54:16 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr17:82,090,416
INFO 2026-06-08 08:54:16 MarkDuplicates Tracking 361320 as yet unmatched pairs. 11120 records in RAM.
INFO 2026-06-08 08:54:18 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr17:82,586,171
INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 354358 as yet unmatched pairs. 4157 records in RAM.
INFO 2026-06-08 08:54:20 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr18:657,714
INFO 2026-06-08 08:54:20 MarkDuplicates Tracking 350308 as yet unmatched pairs. 19680 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 2s. Last read position: chr18:9,522,290
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 347867 as yet unmatched pairs. 17230 records in RAM.
INFO 2026-06-08 08:54:23 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr18:23,824,522
INFO 2026-06-08 08:54:23 MarkDuplicates Tracking 344685 as yet unmatched pairs. 14038 records in RAM.
INFO 2026-06-08 08:54:25 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr18:35,581,843
INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 341515 as yet unmatched pairs. 10867 records in RAM.
INFO 2026-06-08 08:54:26 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr18:49,489,369
INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 341865 as yet unmatched pairs. 11206 records in RAM.
INFO 2026-06-08 08:54:28 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr18:58,709,464
INFO 2026-06-08 08:54:28 MarkDuplicates Tracking 336496 as yet unmatched pairs. 5833 records in RAM.
INFO 2026-06-08 08:54:30 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr18:63,804,361
INFO 2026-06-08 08:54:30 MarkDuplicates Tracking 335181 as yet unmatched pairs. 4518 records in RAM.
INFO 2026-06-08 08:54:34 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 3s. Last read position: chr19:581,424
INFO 2026-06-08 08:54:34 MarkDuplicates Tracking 336100 as yet unmatched pairs. 155028 records in RAM.
INFO 2026-06-08 08:54:36 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 2s. Last read position: chr19:1,106,675
INFO 2026-06-08 08:54:36 MarkDuplicates Tracking 326027 as yet unmatched pairs. 144955 records in RAM.
INFO 2026-06-08 08:54:39 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 2s. Last read position: chr19:1,627,408
INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 322607 as yet unmatched pairs. 141532 records in RAM.
INFO 2026-06-08 08:54:40 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr19:2,434,484
INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 319092 as yet unmatched pairs. 138006 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr19:4,353,006
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 315321 as yet unmatched pairs. 134232 records in RAM.
INFO 2026-06-08 08:54:43 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr19:5,691,531
INFO 2026-06-08 08:54:43 MarkDuplicates Tracking 311538 as yet unmatched pairs. 130449 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr19:7,440,198
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 308719 as yet unmatched pairs. 127626 records in RAM.
INFO 2026-06-08 08:54:47 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr19:8,466,326
INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 306185 as yet unmatched pairs. 125090 records in RAM.
INFO 2026-06-08 08:54:48 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr19:8,903,183
INFO 2026-06-08 08:54:48 MarkDuplicates Tracking 307935 as yet unmatched pairs. 126840 records in RAM.
INFO 2026-06-08 08:54:50 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr19:8,937,872
INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 301984 as yet unmatched pairs. 120888 records in RAM.
INFO 2026-06-08 08:54:52 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr19:8,951,234
INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 297450 as yet unmatched pairs. 116354 records in RAM.
INFO 2026-06-08 08:54:53 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr19:8,958,558
INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 297589 as yet unmatched pairs. 116493 records in RAM.
INFO 2026-06-08 08:54:55 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr19:8,965,755
INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 295357 as yet unmatched pairs. 114261 records in RAM.
INFO 2026-06-08 08:54:56 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr19:9,811,605
INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 290154 as yet unmatched pairs. 109058 records in RAM.
INFO 2026-06-08 08:54:58 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr19:10,625,604
INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 288945 as yet unmatched pairs. 107840 records in RAM.
INFO 2026-06-08 08:55:00 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr19:10,916,742
INFO 2026-06-08 08:55:00 MarkDuplicates Tracking 283811 as yet unmatched pairs. 102705 records in RAM.
INFO 2026-06-08 08:55:03 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 2s. Last read position: chr19:11,666,354
INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 280430 as yet unmatched pairs. 99322 records in RAM.
INFO 2026-06-08 08:55:05 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 2s. Last read position: chr19:12,928,784
INFO 2026-06-08 08:55:05 MarkDuplicates Tracking 277719 as yet unmatched pairs. 96607 records in RAM.
INFO 2026-06-08 08:55:07 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr19:14,097,877
INFO 2026-06-08 08:55:07 MarkDuplicates Tracking 275712 as yet unmatched pairs. 94600 records in RAM.
INFO 2026-06-08 08:55:08 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr19:14,954,135
INFO 2026-06-08 08:55:08 MarkDuplicates Tracking 271329 as yet unmatched pairs. 90217 records in RAM.
INFO 2026-06-08 08:55:10 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr19:15,244,590
INFO 2026-06-08 08:55:10 MarkDuplicates Tracking 271132 as yet unmatched pairs. 90019 records in RAM.
INFO 2026-06-08 08:55:12 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr19:16,862,426
INFO 2026-06-08 08:55:12 MarkDuplicates Tracking 264131 as yet unmatched pairs. 82997 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr19:18,156,120
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 260752 as yet unmatched pairs. 79614 records in RAM.
INFO 2026-06-08 08:55:15 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr19:18,852,233
INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 257339 as yet unmatched pairs. 76196 records in RAM.
INFO 2026-06-08 08:55:17 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr19:20,661,349
INFO 2026-06-08 08:55:17 MarkDuplicates Tracking 254077 as yet unmatched pairs. 72934 records in RAM.
INFO 2026-06-08 08:55:18 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr19:33,387,328
INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 251846 as yet unmatched pairs. 70701 records in RAM.
INFO 2026-06-08 08:55:20 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr19:35,262,609
INFO 2026-06-08 08:55:20 MarkDuplicates Tracking 250723 as yet unmatched pairs. 69577 records in RAM.
INFO 2026-06-08 08:55:22 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr19:35,738,359
INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 244646 as yet unmatched pairs. 63498 records in RAM.
INFO 2026-06-08 08:55:23 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr19:38,106,549
INFO 2026-06-08 08:55:23 MarkDuplicates Tracking 241338 as yet unmatched pairs. 60190 records in RAM.
INFO 2026-06-08 08:55:25 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr19:38,714,549
INFO 2026-06-08 08:55:25 MarkDuplicates Tracking 241558 as yet unmatched pairs. 60408 records in RAM.
INFO 2026-06-08 08:55:27 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr19:39,385,950
INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 235385 as yet unmatched pairs. 54235 records in RAM.
INFO 2026-06-08 08:55:28 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr19:40,365,884
INFO 2026-06-08 08:55:28 MarkDuplicates Tracking 232775 as yet unmatched pairs. 51623 records in RAM.
INFO 2026-06-08 08:55:31 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 2s. Last read position: chr19:41,506,162
INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 228162 as yet unmatched pairs. 47010 records in RAM.
INFO 2026-06-08 08:55:33 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 2s. Last read position: chr19:42,287,905
INFO 2026-06-08 08:55:33 MarkDuplicates Tracking 226432 as yet unmatched pairs. 45278 records in RAM.
INFO 2026-06-08 08:55:35 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr19:43,463,646
INFO 2026-06-08 08:55:35 MarkDuplicates Tracking 225455 as yet unmatched pairs. 44300 records in RAM.
INFO 2026-06-08 08:55:36 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr19:44,992,795
INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 218528 as yet unmatched pairs. 37368 records in RAM.
INFO 2026-06-08 08:55:38 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr19:46,230,855
INFO 2026-06-08 08:55:38 MarkDuplicates Tracking 215640 as yet unmatched pairs. 34475 records in RAM.
INFO 2026-06-08 08:55:39 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr19:47,680,639
INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 211360 as yet unmatched pairs. 30190 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr19:48,874,350
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 208634 as yet unmatched pairs. 27457 records in RAM.
INFO 2026-06-08 08:55:43 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr19:49,499,575
INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 204762 as yet unmatched pairs. 23585 records in RAM.
INFO 2026-06-08 08:55:45 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr19:49,872,947
INFO 2026-06-08 08:55:45 MarkDuplicates Tracking 201582 as yet unmatched pairs. 20405 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr19:51,896,930
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 197884 as yet unmatched pairs. 16703 records in RAM.
INFO 2026-06-08 08:55:48 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr19:53,068,263
INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 195430 as yet unmatched pairs. 14246 records in RAM.
INFO 2026-06-08 08:55:49 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr19:53,490,659
INFO 2026-06-08 08:55:49 MarkDuplicates Tracking 193790 as yet unmatched pairs. 12606 records in RAM.
INFO 2026-06-08 08:55:51 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr19:55,085,884
INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 191025 as yet unmatched pairs. 9835 records in RAM.
INFO 2026-06-08 08:55:52 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr19:55,689,893
INFO 2026-06-08 08:55:52 MarkDuplicates Tracking 186836 as yet unmatched pairs. 5646 records in RAM.
INFO 2026-06-08 08:55:54 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chr19:58,388,230
INFO 2026-06-08 08:55:54 MarkDuplicates Tracking 188479 as yet unmatched pairs. 7282 records in RAM.
INFO 2026-06-08 08:55:56 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 2s. Last read position: chr20:2,117,295
INFO 2026-06-08 08:55:56 MarkDuplicates Tracking 180043 as yet unmatched pairs. 64840 records in RAM.
INFO 2026-06-08 08:55:58 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr20:3,854,690
INFO 2026-06-08 08:55:58 MarkDuplicates Tracking 176583 as yet unmatched pairs. 61372 records in RAM.
INFO 2026-06-08 08:56:01 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 2s. Last read position: chr20:16,732,261
INFO 2026-06-08 08:56:01 MarkDuplicates Tracking 174101 as yet unmatched pairs. 58890 records in RAM.
INFO 2026-06-08 08:56:02 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chr20:20,639,860
INFO 2026-06-08 08:56:02 MarkDuplicates Tracking 170679 as yet unmatched pairs. 55467 records in RAM.
INFO 2026-06-08 08:56:04 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chr20:31,605,473
INFO 2026-06-08 08:56:04 MarkDuplicates Tracking 168198 as yet unmatched pairs. 52983 records in RAM.
INFO 2026-06-08 08:56:06 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chr20:33,686,128
INFO 2026-06-08 08:56:06 MarkDuplicates Tracking 164177 as yet unmatched pairs. 48960 records in RAM.
INFO 2026-06-08 08:56:07 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chr20:34,757,617
INFO 2026-06-08 08:56:07 MarkDuplicates Tracking 162027 as yet unmatched pairs. 46810 records in RAM.
INFO 2026-06-08 08:56:09 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chr20:35,654,660
INFO 2026-06-08 08:56:09 MarkDuplicates Tracking 159194 as yet unmatched pairs. 43969 records in RAM.
INFO 2026-06-08 08:56:11 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chr20:36,904,215
INFO 2026-06-08 08:56:11 MarkDuplicates Tracking 158132 as yet unmatched pairs. 42905 records in RAM.
INFO 2026-06-08 08:56:12 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chr20:37,518,950
INFO 2026-06-08 08:56:12 MarkDuplicates Tracking 155863 as yet unmatched pairs. 40636 records in RAM.
INFO 2026-06-08 08:56:14 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chr20:43,423,074
INFO 2026-06-08 08:56:14 MarkDuplicates Tracking 149088 as yet unmatched pairs. 33858 records in RAM.
INFO 2026-06-08 08:56:16 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 2s. Last read position: chr20:45,253,625
INFO 2026-06-08 08:56:16 MarkDuplicates Tracking 162564 as yet unmatched pairs. 47334 records in RAM.
INFO 2026-06-08 08:56:18 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chr20:45,812,687
INFO 2026-06-08 08:56:18 MarkDuplicates Tracking 148138 as yet unmatched pairs. 32903 records in RAM.
INFO 2026-06-08 08:56:19 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chr20:47,089,269
INFO 2026-06-08 08:56:19 MarkDuplicates Tracking 142357 as yet unmatched pairs. 27121 records in RAM.
INFO 2026-06-08 08:56:21 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chr20:49,643,534
INFO 2026-06-08 08:56:21 MarkDuplicates Tracking 138434 as yet unmatched pairs. 23196 records in RAM.
INFO 2026-06-08 08:56:23 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 2s. Last read position: chr20:51,432,636
INFO 2026-06-08 08:56:23 MarkDuplicates Tracking 133576 as yet unmatched pairs. 18338 records in RAM.
INFO 2026-06-08 08:56:25 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 1s. Last read position: chr20:58,891,698
INFO 2026-06-08 08:56:25 MarkDuplicates Tracking 132786 as yet unmatched pairs. 17548 records in RAM.
INFO 2026-06-08 08:56:27 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 2s. Last read position: chr20:58,991,947
INFO 2026-06-08 08:56:27 MarkDuplicates Tracking 127525 as yet unmatched pairs. 12280 records in RAM.
INFO 2026-06-08 08:56:29 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 2s. Last read position: chr20:62,387,341
INFO 2026-06-08 08:56:29 MarkDuplicates Tracking 126097 as yet unmatched pairs. 10852 records in RAM.
INFO 2026-06-08 08:56:31 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: chr20:63,520,855
INFO 2026-06-08 08:56:31 MarkDuplicates Tracking 128198 as yet unmatched pairs. 12953 records in RAM.
INFO 2026-06-08 08:56:32 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: chr20:63,890,001
INFO 2026-06-08 08:56:32 MarkDuplicates Tracking 117092 as yet unmatched pairs. 1847 records in RAM.
INFO 2026-06-08 08:56:34 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,890
INFO 2026-06-08 08:56:34 MarkDuplicates Tracking 114063 as yet unmatched pairs. 21345 records in RAM.
INFO 2026-06-08 08:56:35 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 1s. Last read position: chr21:15,878,303
INFO 2026-06-08 08:56:35 MarkDuplicates Tracking 113067 as yet unmatched pairs. 20348 records in RAM.
INFO 2026-06-08 08:56:37 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 1s. Last read position: chr21:26,089,992
INFO 2026-06-08 08:56:37 MarkDuplicates Tracking 119733 as yet unmatched pairs. 27014 records in RAM.
INFO 2026-06-08 08:56:39 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 1s. Last read position: chr21:33,432,200
INFO 2026-06-08 08:56:39 MarkDuplicates Tracking 106952 as yet unmatched pairs. 14223 records in RAM.
INFO 2026-06-08 08:56:40 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: chr21:37,153,036
INFO 2026-06-08 08:56:40 MarkDuplicates Tracking 105179 as yet unmatched pairs. 12450 records in RAM.
INFO 2026-06-08 08:56:43 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 2s. Last read position: chr21:41,907,650
INFO 2026-06-08 08:56:43 MarkDuplicates Tracking 100885 as yet unmatched pairs. 8152 records in RAM.
INFO 2026-06-08 08:56:44 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:21:34s. Time for last 1,000,000: 1s. Last read position: chr21:44,228,783
INFO 2026-06-08 08:56:44 MarkDuplicates Tracking 98089 as yet unmatched pairs. 5353 records in RAM.
INFO 2026-06-08 08:56:46 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 1s. Last read position: chr21:46,302,072
INFO 2026-06-08 08:56:46 MarkDuplicates Tracking 94414 as yet unmatched pairs. 1677 records in RAM.
INFO 2026-06-08 08:56:48 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 1s. Last read position: chr22:19,377,946
INFO 2026-06-08 08:56:48 MarkDuplicates Tracking 91277 as yet unmatched pairs. 34718 records in RAM.
INFO 2026-06-08 08:56:50 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 1s. Last read position: chr22:21,610,979
INFO 2026-06-08 08:56:50 MarkDuplicates Tracking 88818 as yet unmatched pairs. 32256 records in RAM.
INFO 2026-06-08 08:56:51 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 1s. Last read position: chr22:25,039,824
INFO 2026-06-08 08:56:51 MarkDuplicates Tracking 84796 as yet unmatched pairs. 28219 records in RAM.
INFO 2026-06-08 08:56:53 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:43s. Time for last 1,000,000: 1s. Last read position: chr22:29,356,470
INFO 2026-06-08 08:56:53 MarkDuplicates Tracking 82461 as yet unmatched pairs. 25884 records in RAM.
INFO 2026-06-08 08:56:55 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 1s. Last read position: chr22:35,403,449
INFO 2026-06-08 08:56:55 MarkDuplicates Tracking 79547 as yet unmatched pairs. 22970 records in RAM.
INFO 2026-06-08 08:56:56 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:47s. Time for last 1,000,000: 1s. Last read position: chr22:37,024,632
INFO 2026-06-08 08:56:56 MarkDuplicates Tracking 76075 as yet unmatched pairs. 19493 records in RAM.
INFO 2026-06-08 08:56:58 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 1s. Last read position: chr22:38,749,787
INFO 2026-06-08 08:56:58 MarkDuplicates Tracking 72835 as yet unmatched pairs. 16253 records in RAM.
INFO 2026-06-08 08:57:00 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 1s. Last read position: chr22:41,176,945
INFO 2026-06-08 08:57:00 MarkDuplicates Tracking 69632 as yet unmatched pairs. 13047 records in RAM.
INFO 2026-06-08 08:57:01 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:51s. Time for last 1,000,000: 1s. Last read position: chr22:42,602,819
INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 66214 as yet unmatched pairs. 9629 records in RAM.
INFO 2026-06-08 08:57:03 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:53s. Time for last 1,000,000: 1s. Last read position: chr22:47,037,097
INFO 2026-06-08 08:57:03 MarkDuplicates Tracking 62567 as yet unmatched pairs. 5977 records in RAM.
INFO 2026-06-08 08:57:05 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 1s. Last read position: chr22:50,465,782
INFO 2026-06-08 08:57:05 MarkDuplicates Tracking 59671 as yet unmatched pairs. 3079 records in RAM.
INFO 2026-06-08 08:57:06 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:57s. Time for last 1,000,000: 1s. Last read position: chrX:2,722,655
INFO 2026-06-08 08:57:06 MarkDuplicates Tracking 62327 as yet unmatched pairs. 53658 records in RAM.
INFO 2026-06-08 08:57:08 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 1s. Last read position: chrX:10,567,053
INFO 2026-06-08 08:57:08 MarkDuplicates Tracking 54840 as yet unmatched pairs. 46171 records in RAM.
INFO 2026-06-08 08:57:10 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:22:00s. Time for last 1,000,000: 1s. Last read position: chrX:18,948,750
INFO 2026-06-08 08:57:10 MarkDuplicates Tracking 49645 as yet unmatched pairs. 40976 records in RAM.
INFO 2026-06-08 08:57:11 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:22:02s. Time for last 1,000,000: 1s. Last read position: chrX:40,074,956
INFO 2026-06-08 08:57:11 MarkDuplicates Tracking 46992 as yet unmatched pairs. 38322 records in RAM.
INFO 2026-06-08 08:57:13 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:22:04s. Time for last 1,000,000: 1s. Last read position: chrX:47,145,304
INFO 2026-06-08 08:57:13 MarkDuplicates Tracking 43866 as yet unmatched pairs. 35195 records in RAM.
INFO 2026-06-08 08:57:15 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 1s. Last read position: chrX:48,823,691
INFO 2026-06-08 08:57:15 MarkDuplicates Tracking 41302 as yet unmatched pairs. 32631 records in RAM.
INFO 2026-06-08 08:57:17 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 1s. Last read position: chrX:53,215,924
INFO 2026-06-08 08:57:17 MarkDuplicates Tracking 38394 as yet unmatched pairs. 29723 records in RAM.
INFO 2026-06-08 08:57:18 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:22:09s. Time for last 1,000,000: 1s. Last read position: chrX:53,939,125
INFO 2026-06-08 08:57:18 MarkDuplicates Tracking 34828 as yet unmatched pairs. 26157 records in RAM.
INFO 2026-06-08 08:57:20 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:22:10s. Time for last 1,000,000: 1s. Last read position: chrX:71,250,476
INFO 2026-06-08 08:57:20 MarkDuplicates Tracking 31888 as yet unmatched pairs. 23216 records in RAM.
INFO 2026-06-08 08:57:21 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:22:12s. Time for last 1,000,000: 1s. Last read position: chrX:75,741,971
INFO 2026-06-08 08:57:21 MarkDuplicates Tracking 29270 as yet unmatched pairs. 20598 records in RAM.
INFO 2026-06-08 08:57:23 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:22:13s. Time for last 1,000,000: 1s. Last read position: chrX:101,391,784
INFO 2026-06-08 08:57:23 MarkDuplicates Tracking 31209 as yet unmatched pairs. 22537 records in RAM.
INFO 2026-06-08 08:57:25 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:22:15s. Time for last 1,000,000: 1s. Last read position: chrX:118,989,627
INFO 2026-06-08 08:57:25 MarkDuplicates Tracking 23962 as yet unmatched pairs. 15286 records in RAM.
INFO 2026-06-08 08:57:26 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 1s. Last read position: chrX:130,025,135
INFO 2026-06-08 08:57:26 MarkDuplicates Tracking 21414 as yet unmatched pairs. 12737 records in RAM.
INFO 2026-06-08 08:57:28 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:22:18s. Time for last 1,000,000: 1s. Last read position: chrX:149,496,396
INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 19319 as yet unmatched pairs. 10642 records in RAM.
INFO 2026-06-08 08:57:29 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:22:20s. Time for last 1,000,000: 1s. Last read position: chrX:153,954,398
INFO 2026-06-08 08:57:29 MarkDuplicates Tracking 15646 as yet unmatched pairs. 6969 records in RAM.
INFO 2026-06-08 08:57:31 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:22:21s. Time for last 1,000,000: 1s. Last read position: chrX:154,370,877
INFO 2026-06-08 08:57:31 MarkDuplicates Tracking 13487 as yet unmatched pairs. 4806 records in RAM.
INFO 2026-06-08 08:57:33 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:22:23s. Time for last 1,000,000: 1s. Last read position: chrX:154,887,356
INFO 2026-06-08 08:57:33 MarkDuplicates Tracking 9381 as yet unmatched pairs. 700 records in RAM.
INFO 2026-06-08 08:57:34 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:22:24s. Time for last 1,000,000: 1s. Last read position: GL000220.1:153,723
INFO 2026-06-08 08:57:34 MarkDuplicates Tracking 6226 as yet unmatched pairs. 80 records in RAM.
INFO 2026-06-08 08:57:35 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:22:25s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,085
INFO 2026-06-08 08:57:35 MarkDuplicates Tracking 80 as yet unmatched pairs. 54 records in RAM.
INFO 2026-06-08 08:57:35 MarkDuplicates Read 627286312 records. 0 pairs never matched.
INFO 2026-06-08 08:58:22 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141112; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:58:22 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:58:24 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:58:24 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:58:30 OpticalDuplicateFinder Large duplicate set. size = 1229
INFO 2026-06-08 08:58:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,235
INFO 2026-06-08 08:58:31 OpticalDuplicateFinder Large duplicate set. size = 1019
INFO 2026-06-08 08:58:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,812
INFO 2026-06-08 08:58:53 OpticalDuplicateFinder Large duplicate set. size = 1239
INFO 2026-06-08 08:58:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,755
INFO 2026-06-08 08:58:55 OpticalDuplicateFinder Large duplicate set. size = 1030
INFO 2026-06-08 08:58:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,060
INFO 2026-06-08 08:59:48 OpticalDuplicateFinder Large duplicate set. size = 1297
INFO 2026-06-08 08:59:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,755
INFO 2026-06-08 08:59:57 OpticalDuplicateFinder Large duplicate set. size = 1086
INFO 2026-06-08 08:59:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,823
INFO 2026-06-08 08:59:57 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:59:57 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:01:09 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:01:13 MarkDuplicates After generateDuplicateIndexes freeMemory: 203980288; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:01:13 MarkDuplicates Marking 332208153 records as duplicates.
INFO 2026-06-08 09:01:13 MarkDuplicates Found 32134632 optical duplicate clusters.
INFO 2026-06-08 09:01:13 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:01:29 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:20,652,630
INFO 2026-06-08 09:01:46 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:32s. Time for last 10,000,000: 16s. Last read position: chr1:32,964,211
INFO 2026-06-08 09:02:02 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:49s. Time for last 10,000,000: 16s. Last read position: chr1:93,129,336
INFO 2026-06-08 09:02:19 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:05s. Time for last 10,000,000: 16s. Last read position: chr1:149,842,426
INFO 2026-06-08 09:02:35 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:22s. Time for last 10,000,000: 16s. Last read position: chr1:154,183,049
INFO 2026-06-08 09:02:51 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:38s. Time for last 10,000,000: 16s. Last read position: chr1:159,781,160
INFO 2026-06-08 09:03:08 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:54s. Time for last 10,000,000: 16s. Last read position: chr1:209,796,347
INFO 2026-06-08 09:03:24 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:11s. Time for last 10,000,000: 16s. Last read position: chr2:27,492,692
INFO 2026-06-08 09:03:40 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:27s. Time for last 10,000,000: 16s. Last read position: chr2:47,162,548
INFO 2026-06-08 09:03:57 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:44s. Time for last 10,000,000: 16s. Last read position: chr2:98,536,171
INFO 2026-06-08 09:04:13 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:00s. Time for last 10,000,000: 16s. Last read position: chr2:190,436,511
INFO 2026-06-08 09:04:30 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:16s. Time for last 10,000,000: 16s. Last read position: chr2:219,182,398
INFO 2026-06-08 09:04:46 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:33s. Time for last 10,000,000: 16s. Last read position: chr3:48,679,058
INFO 2026-06-08 09:05:03 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:50s. Time for last 10,000,000: 16s. Last read position: chr3:129,171,511
INFO 2026-06-08 09:05:20 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:06s. Time for last 10,000,000: 16s. Last read position: chr3:185,923,882
INFO 2026-06-08 09:05:36 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:23s. Time for last 10,000,000: 16s. Last read position: chr4:42,001,619
INFO 2026-06-08 09:05:53 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:40s. Time for last 10,000,000: 16s. Last read position: chr4:145,903,038
INFO 2026-06-08 09:06:10 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:56s. Time for last 10,000,000: 16s. Last read position: chr5:71,109,773
INFO 2026-06-08 09:06:26 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:13s. Time for last 10,000,000: 16s. Last read position: chr5:157,029,550
INFO 2026-06-08 09:06:43 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:29s. Time for last 10,000,000: 16s. Last read position: chr6:27,865,465
INFO 2026-06-08 09:06:59 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:46s. Time for last 10,000,000: 16s. Last read position: chr6:75,256,122
INFO 2026-06-08 09:07:16 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:03s. Time for last 10,000,000: 16s. Last read position: chr7:5,371,149
INFO 2026-06-08 09:07:33 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:20s. Time for last 10,000,000: 17s. Last read position: chr7:64,521,202
INFO 2026-06-08 09:07:49 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:36s. Time for last 10,000,000: 16s. Last read position: chr7:99,042,121
INFO 2026-06-08 09:08:07 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:53s. Time for last 10,000,000: 17s. Last read position: chr7:156,763,669
INFO 2026-06-08 09:08:24 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:11s. Time for last 10,000,000: 17s. Last read position: chr8:73,292,391
INFO 2026-06-08 09:08:41 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:28s. Time for last 10,000,000: 16s. Last read position: chr8:143,861,888
INFO 2026-06-08 09:08:57 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:44s. Time for last 10,000,000: 16s. Last read position: chr9:34,521,424
INFO 2026-06-08 09:09:14 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:00s. Time for last 10,000,000: 16s. Last read position: chr9:121,759,902
INFO 2026-06-08 09:09:30 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:17s. Time for last 10,000,000: 16s. Last read position: chr10:1,007,095
INFO 2026-06-08 09:09:47 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:33s. Time for last 10,000,000: 16s. Last read position: chr10:88,851,588
INFO 2026-06-08 09:10:03 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:50s. Time for last 10,000,000: 16s. Last read position: chr11:1,883,433
INFO 2026-06-08 09:10:20 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:06s. Time for last 10,000,000: 16s. Last read position: chr11:59,192,102
INFO 2026-06-08 09:10:36 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:23s. Time for last 10,000,000: 16s. Last read position: chr11:65,183,127
INFO 2026-06-08 09:10:53 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:39s. Time for last 10,000,000: 16s. Last read position: chr11:95,090,129
INFO 2026-06-08 09:11:09 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:56s. Time for last 10,000,000: 16s. Last read position: chr12:6,869,299
INFO 2026-06-08 09:11:26 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:12s. Time for last 10,000,000: 16s. Last read position: chr12:52,807,100
INFO 2026-06-08 09:11:42 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:29s. Time for last 10,000,000: 16s. Last read position: chr12:68,710,058
INFO 2026-06-08 09:11:59 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:45s. Time for last 10,000,000: 16s. Last read position: chr12:133,048,067
INFO 2026-06-08 09:12:15 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:02s. Time for last 10,000,000: 16s. Last read position: chr14:21,021,817
INFO 2026-06-08 09:12:32 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:19s. Time for last 10,000,000: 16s. Last read position: chr14:64,541,972
INFO 2026-06-08 09:12:49 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:35s. Time for last 10,000,000: 16s. Last read position: chr14:105,464,510
INFO 2026-06-08 09:13:05 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:52s. Time for last 10,000,000: 16s. Last read position: chr15:72,207,241
INFO 2026-06-08 09:13:21 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:08s. Time for last 10,000,000: 16s. Last read position: chr16:4,114,559
INFO 2026-06-08 09:13:38 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:25s. Time for last 10,000,000: 16s. Last read position: chr16:29,443,433
INFO 2026-06-08 09:13:54 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:41s. Time for last 10,000,000: 16s. Last read position: chr16:70,042,407
INFO 2026-06-08 09:14:11 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:58s. Time for last 10,000,000: 16s. Last read position: chr17:7,462,052
INFO 2026-06-08 09:14:27 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:14s. Time for last 10,000,000: 16s. Last read position: chr17:39,072,433
INFO 2026-06-08 09:14:44 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:30s. Time for last 10,000,000: 16s. Last read position: chr17:50,188,600
INFO 2026-06-08 09:15:00 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:47s. Time for last 10,000,000: 16s. Last read position: chr17:75,136,036
INFO 2026-06-08 09:15:17 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:03s. Time for last 10,000,000: 16s. Last read position: chr17:81,845,650
INFO 2026-06-08 09:15:33 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:20s. Time for last 10,000,000: 16s. Last read position: chr18:58,709,464
INFO 2026-06-08 09:15:50 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:37s. Time for last 10,000,000: 16s. Last read position: chr19:8,903,183
INFO 2026-06-08 09:16:06 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:53s. Time for last 10,000,000: 16s. Last read position: chr19:14,097,877
INFO 2026-06-08 09:16:23 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:09s. Time for last 10,000,000: 16s. Last read position: chr19:38,106,549
INFO 2026-06-08 09:16:39 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:26s. Time for last 10,000,000: 16s. Last read position: chr19:48,874,350
INFO 2026-06-08 09:16:55 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:42s. Time for last 10,000,000: 16s. Last read position: chr20:3,854,690
INFO 2026-06-08 09:17:12 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:58s. Time for last 10,000,000: 16s. Last read position: chr20:45,253,625
INFO 2026-06-08 09:17:28 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:15s. Time for last 10,000,000: 16s. Last read position: chr21:8,258,890
INFO 2026-06-08 09:17:44 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:31s. Time for last 10,000,000: 16s. Last read position: chr22:25,039,824
INFO 2026-06-08 09:18:01 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:47s. Time for last 10,000,000: 16s. Last read position: chrX:10,567,053
INFO 2026-06-08 09:18:17 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:04s. Time for last 10,000,000: 16s. Last read position: chrX:118,989,627
INFO 2026-06-08 09:18:35 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:17:22s. Time for last 10,000,000: 17s. Last read position: */*
INFO 2026-06-08 09:18:37 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:18:37 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:18:37 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:18:37 MarkDuplicates Before output close freeMemory: 203941824; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:18:37 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:18:37 MarkDuplicates After output close freeMemory: 104183120; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:18:37 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 43.49 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory