File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/a2186039d84bd47d3dbf4548b631fe/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (aih-tih-sc-3924cb-R1_B23WHYVLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/013786bf60e48795a82bf865049234/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/a2186039d84bd47d3dbf4548b631fe/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/a2186039d84bd47d3dbf4548b631fe/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/5da4b0f0dc5b55b097fe818cf33f1e/aih-tih-sc-3924cb-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/9f76ae252a916b72bf6353ff00a98b/aih-tih-sc-3924cb-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 345102544
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-3924cb-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	345102544
Known Splicing Events:	342128516
Partial Novel Splicing Events:	1597374
Novel Splicing Events:	1270961
Filtered Splicing Events:	105693

Total splicing  Junctions:	570528
Known Splicing Junctions:	274798
Partial Novel Splicing Junctions:	159749
Novel Splicing Junctions:	135981

===================================================================
Create BED file ...
Create Interact file ...