Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/60ed2737b146ef18f525f067027e7a/aih-tih-sc-37dd87-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/d3e37fdfd17fd572fe4e1614f6bd46/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/d3e37fdfd17fd572fe4e1614f6bd46/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/0f55d65d70970a51c7e941a8ab0b71/aih-tih-sc-37dd87-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-37dd87-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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