Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/35bb1280f2ca21fe7888ffef81700b/aih-tih-sc-ea6ef3-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/7e5b57113bcb6fd516dc7471a996ed/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/7e5b57113bcb6fd516dc7471a996ed/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-ea6ef3-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-ea6ef3-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-ea6ef3-R1_B23WHYVLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
09:03:12.292 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 09:03:12 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-ea6ef3-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-ea6ef3-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-ea6ef3-R1_B23WHYVLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 09:03:12 GMT 2026] Executing as ?@nf-c57e5b57113bcb6fd516dc7471a996ed-63a7c-nw7bp on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 09:03:12 MarkDuplicates Start of doWork freeMemory: 105828992; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 09:03:12 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 09:03:12 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 09:03:16 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,402,237
INFO 2026-06-08 09:03:16 MarkDuplicates Tracking 3763 as yet unmatched pairs. 347 records in RAM.
INFO 2026-06-08 09:03:19 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:3,675,168
INFO 2026-06-08 09:03:19 MarkDuplicates Tracking 6854 as yet unmatched pairs. 39 records in RAM.
INFO 2026-06-08 09:03:20 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:8,866,424
INFO 2026-06-08 09:03:20 MarkDuplicates Tracking 11046 as yet unmatched pairs. 1001 records in RAM.
INFO 2026-06-08 09:03:23 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:11,216,190
INFO 2026-06-08 09:03:23 MarkDuplicates Tracking 13489 as yet unmatched pairs. 298 records in RAM.
INFO 2026-06-08 09:03:25 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:15,727,715
INFO 2026-06-08 09:03:25 MarkDuplicates Tracking 16592 as yet unmatched pairs. 181 records in RAM.
INFO 2026-06-08 09:03:26 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:17,028,631
INFO 2026-06-08 09:03:26 MarkDuplicates Tracking 19541 as yet unmatched pairs. 259 records in RAM.
INFO 2026-06-08 09:03:27 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:19,597,072
INFO 2026-06-08 09:03:27 MarkDuplicates Tracking 23293 as yet unmatched pairs. 973 records in RAM.
INFO 2026-06-08 09:03:30 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 2s. Last read position: chr1:21,613,673
INFO 2026-06-08 09:03:30 MarkDuplicates Tracking 25465 as yet unmatched pairs. 198 records in RAM.
INFO 2026-06-08 09:03:32 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:22,086,759
INFO 2026-06-08 09:03:32 MarkDuplicates Tracking 29839 as yet unmatched pairs. 1299 records in RAM.
INFO 2026-06-08 09:03:34 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:23,793,710
INFO 2026-06-08 09:03:34 MarkDuplicates Tracking 32037 as yet unmatched pairs. 589 records in RAM.
INFO 2026-06-08 09:03:35 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:26,432,873
INFO 2026-06-08 09:03:35 MarkDuplicates Tracking 34399 as yet unmatched pairs. 167 records in RAM.
INFO 2026-06-08 09:03:37 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:27,549,113
INFO 2026-06-08 09:03:37 MarkDuplicates Tracking 37383 as yet unmatched pairs. 167 records in RAM.
INFO 2026-06-08 09:03:39 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:31,423,809
INFO 2026-06-08 09:03:39 MarkDuplicates Tracking 40912 as yet unmatched pairs. 514 records in RAM.
INFO 2026-06-08 09:03:41 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:32,770,159
INFO 2026-06-08 09:03:41 MarkDuplicates Tracking 43753 as yet unmatched pairs. 207 records in RAM.
INFO 2026-06-08 09:03:42 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:35,474,858
INFO 2026-06-08 09:03:42 MarkDuplicates Tracking 46843 as yet unmatched pairs. 190 records in RAM.
INFO 2026-06-08 09:03:44 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:39,310,288
INFO 2026-06-08 09:03:44 MarkDuplicates Tracking 49883 as yet unmatched pairs. 322 records in RAM.
INFO 2026-06-08 09:03:46 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:41,070,673
INFO 2026-06-08 09:03:46 MarkDuplicates Tracking 52666 as yet unmatched pairs. 223 records in RAM.
INFO 2026-06-08 09:03:48 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:43,603,890
INFO 2026-06-08 09:03:48 MarkDuplicates Tracking 56327 as yet unmatched pairs. 755 records in RAM.
INFO 2026-06-08 09:03:50 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:45,568,960
INFO 2026-06-08 09:03:50 MarkDuplicates Tracking 59617 as yet unmatched pairs. 988 records in RAM.
INFO 2026-06-08 09:03:51 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:47,668,707
INFO 2026-06-08 09:03:51 MarkDuplicates Tracking 61641 as yet unmatched pairs. 41 records in RAM.
INFO 2026-06-08 09:03:54 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 2s. Last read position: chr1:54,227,125
INFO 2026-06-08 09:03:54 MarkDuplicates Tracking 64753 as yet unmatched pairs. 263 records in RAM.
INFO 2026-06-08 09:03:55 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:63,654,440
INFO 2026-06-08 09:03:55 MarkDuplicates Tracking 67647 as yet unmatched pairs. 257 records in RAM.
INFO 2026-06-08 09:03:57 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 2s. Last read position: chr1:77,949,088
INFO 2026-06-08 09:03:57 MarkDuplicates Tracking 70321 as yet unmatched pairs. 293 records in RAM.
INFO 2026-06-08 09:03:59 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:89,009,047
INFO 2026-06-08 09:03:59 MarkDuplicates Tracking 72945 as yet unmatched pairs. 249 records in RAM.
INFO 2026-06-08 09:04:01 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:94,530,423
INFO 2026-06-08 09:04:01 MarkDuplicates Tracking 76876 as yet unmatched pairs. 1420 records in RAM.
INFO 2026-06-08 09:04:02 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:108,992,596
INFO 2026-06-08 09:04:02 MarkDuplicates Tracking 78271 as yet unmatched pairs. 159 records in RAM.
INFO 2026-06-08 09:04:04 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:111,447,439
INFO 2026-06-08 09:04:04 MarkDuplicates Tracking 81284 as yet unmatched pairs. 226 records in RAM.
INFO 2026-06-08 09:04:05 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:113,899,900
INFO 2026-06-08 09:04:05 MarkDuplicates Tracking 83969 as yet unmatched pairs. 139 records in RAM.
INFO 2026-06-08 09:04:07 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:116,393,621
INFO 2026-06-08 09:04:07 MarkDuplicates Tracking 87388 as yet unmatched pairs. 903 records in RAM.
INFO 2026-06-08 09:04:09 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:119,799,739
INFO 2026-06-08 09:04:09 MarkDuplicates Tracking 102066 as yet unmatched pairs. 12784 records in RAM.
INFO 2026-06-08 09:04:11 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:120,453,385
INFO 2026-06-08 09:04:11 MarkDuplicates Tracking 92388 as yet unmatched pairs. 231 records in RAM.
INFO 2026-06-08 09:04:13 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:146,128,175
INFO 2026-06-08 09:04:13 MarkDuplicates Tracking 93765 as yet unmatched pairs. 93 records in RAM.
INFO 2026-06-08 09:04:14 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:148,595,539
INFO 2026-06-08 09:04:14 MarkDuplicates Tracking 95135 as yet unmatched pairs. 287 records in RAM.
INFO 2026-06-08 09:04:16 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:149,851,269
INFO 2026-06-08 09:04:16 MarkDuplicates Tracking 97153 as yet unmatched pairs. 184 records in RAM.
INFO 2026-06-08 09:04:17 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:150,578,274
INFO 2026-06-08 09:04:17 MarkDuplicates Tracking 100673 as yet unmatched pairs. 1588 records in RAM.
INFO 2026-06-08 09:04:19 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:151,427,962
INFO 2026-06-08 09:04:19 MarkDuplicates Tracking 102184 as yet unmatched pairs. 238 records in RAM.
INFO 2026-06-08 09:04:20 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:153,936,624
INFO 2026-06-08 09:04:20 MarkDuplicates Tracking 105136 as yet unmatched pairs. 228 records in RAM.
INFO 2026-06-08 09:04:22 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:154,173,170
INFO 2026-06-08 09:04:22 MarkDuplicates Tracking 112163 as yet unmatched pairs. 4455 records in RAM.
INFO 2026-06-08 09:04:23 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:155,054,176
INFO 2026-06-08 09:04:23 MarkDuplicates Tracking 111065 as yet unmatched pairs. 473 records in RAM.
INFO 2026-06-08 09:04:25 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:155,327,053
INFO 2026-06-08 09:04:25 MarkDuplicates Tracking 113737 as yet unmatched pairs. 315 records in RAM.
INFO 2026-06-08 09:04:26 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:156,115,103
INFO 2026-06-08 09:04:26 MarkDuplicates Tracking 120230 as yet unmatched pairs. 3881 records in RAM.
INFO 2026-06-08 09:04:28 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:156,293,948
INFO 2026-06-08 09:04:28 MarkDuplicates Tracking 120154 as yet unmatched pairs. 98 records in RAM.
INFO 2026-06-08 09:04:29 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:160,095,101
INFO 2026-06-08 09:04:29 MarkDuplicates Tracking 123292 as yet unmatched pairs. 209 records in RAM.
INFO 2026-06-08 09:04:31 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:161,544,864
INFO 2026-06-08 09:04:31 MarkDuplicates Tracking 126469 as yet unmatched pairs. 501 records in RAM.
INFO 2026-06-08 09:04:32 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:169,111,360
INFO 2026-06-08 09:04:32 MarkDuplicates Tracking 133645 as yet unmatched pairs. 4742 records in RAM.
INFO 2026-06-08 09:04:34 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:171,541,499
INFO 2026-06-08 09:04:34 MarkDuplicates Tracking 132222 as yet unmatched pairs. 310 records in RAM.
INFO 2026-06-08 09:04:35 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:179,095,124
INFO 2026-06-08 09:04:35 MarkDuplicates Tracking 134949 as yet unmatched pairs. 303 records in RAM.
INFO 2026-06-08 09:04:37 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:183,529,419
INFO 2026-06-08 09:04:37 MarkDuplicates Tracking 137979 as yet unmatched pairs. 314 records in RAM.
INFO 2026-06-08 09:04:38 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:186,352,011
INFO 2026-06-08 09:04:38 MarkDuplicates Tracking 141337 as yet unmatched pairs. 1085 records in RAM.
INFO 2026-06-08 09:04:41 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 2s. Last read position: chr1:200,898,419
INFO 2026-06-08 09:04:41 MarkDuplicates Tracking 143406 as yet unmatched pairs. 604 records in RAM.
INFO 2026-06-08 09:04:43 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:202,943,854
INFO 2026-06-08 09:04:43 MarkDuplicates Tracking 146494 as yet unmatched pairs. 653 records in RAM.
INFO 2026-06-08 09:04:44 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:205,163,923
INFO 2026-06-08 09:04:44 MarkDuplicates Tracking 148762 as yet unmatched pairs. 106 records in RAM.
INFO 2026-06-08 09:04:46 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:206,934,623
INFO 2026-06-08 09:04:46 MarkDuplicates Tracking 154984 as yet unmatched pairs. 3503 records in RAM.
INFO 2026-06-08 09:04:47 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:207,326,786
INFO 2026-06-08 09:04:47 MarkDuplicates Tracking 157805 as yet unmatched pairs. 3034 records in RAM.
INFO 2026-06-08 09:04:49 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 2s. Last read position: chr1:211,372,161
INFO 2026-06-08 09:04:49 MarkDuplicates Tracking 157611 as yet unmatched pairs. 84 records in RAM.
INFO 2026-06-08 09:04:51 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:222,628,439
INFO 2026-06-08 09:04:51 MarkDuplicates Tracking 160464 as yet unmatched pairs. 253 records in RAM.
INFO 2026-06-08 09:04:53 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:225,856,909
INFO 2026-06-08 09:04:53 MarkDuplicates Tracking 163575 as yet unmatched pairs. 544 records in RAM.
INFO 2026-06-08 09:04:54 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:228,743,282
INFO 2026-06-08 09:04:54 MarkDuplicates Tracking 166208 as yet unmatched pairs. 92 records in RAM.
INFO 2026-06-08 09:04:56 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:235,766,246
INFO 2026-06-08 09:04:56 MarkDuplicates Tracking 169412 as yet unmatched pairs. 167 records in RAM.
INFO 2026-06-08 09:04:58 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:246,726,987
INFO 2026-06-08 09:04:58 MarkDuplicates Tracking 172323 as yet unmatched pairs. 198 records in RAM.
INFO 2026-06-08 09:05:00 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 2s. Last read position: chr2:9,414,218
INFO 2026-06-08 09:05:00 MarkDuplicates Tracking 175334 as yet unmatched pairs. 173505 records in RAM.
INFO 2026-06-08 09:05:02 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr2:17,773,097
INFO 2026-06-08 09:05:02 MarkDuplicates Tracking 178220 as yet unmatched pairs. 176357 records in RAM.
INFO 2026-06-08 09:05:04 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr2:24,823,318
INFO 2026-06-08 09:05:04 MarkDuplicates Tracking 181177 as yet unmatched pairs. 179270 records in RAM.
INFO 2026-06-08 09:05:05 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr2:27,376,619
INFO 2026-06-08 09:05:05 MarkDuplicates Tracking 184357 as yet unmatched pairs. 182412 records in RAM.
INFO 2026-06-08 09:05:07 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:32,377,676
INFO 2026-06-08 09:05:07 MarkDuplicates Tracking 187744 as yet unmatched pairs. 185773 records in RAM.
INFO 2026-06-08 09:05:09 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,257
INFO 2026-06-08 09:05:09 MarkDuplicates Tracking 270537 as yet unmatched pairs. 180994 records in RAM.
INFO 2026-06-08 09:05:10 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:05:10 MarkDuplicates Tracking 573229 as yet unmatched pairs. 163330 records in RAM.
INFO 2026-06-08 09:05:12 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:05:12 MarkDuplicates Tracking 1219743 as yet unmatched pairs. 126247 records in RAM.
INFO 2026-06-08 09:05:14 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:05:14 MarkDuplicates Tracking 1484455 as yet unmatched pairs. 110308 records in RAM.
INFO 2026-06-08 09:05:15 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:05:15 MarkDuplicates Tracking 1487694 as yet unmatched pairs. 110121 records in RAM.
INFO 2026-06-08 09:05:16 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:36,851,000
INFO 2026-06-08 09:05:16 MarkDuplicates Tracking 1583586 as yet unmatched pairs. 105455 records in RAM.
INFO 2026-06-08 09:05:18 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:42,295,210
INFO 2026-06-08 09:05:18 MarkDuplicates Tracking 1581231 as yet unmatched pairs. 103065 records in RAM.
INFO 2026-06-08 09:05:20 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:43,973,870
INFO 2026-06-08 09:05:20 MarkDuplicates Tracking 1576913 as yet unmatched pairs. 98723 records in RAM.
INFO 2026-06-08 09:05:21 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:47,379,881
INFO 2026-06-08 09:05:21 MarkDuplicates Tracking 1576897 as yet unmatched pairs. 98661 records in RAM.
INFO 2026-06-08 09:05:23 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:54,644,350
INFO 2026-06-08 09:05:23 MarkDuplicates Tracking 1571410 as yet unmatched pairs. 93153 records in RAM.
INFO 2026-06-08 09:05:24 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:60,953,054
INFO 2026-06-08 09:05:24 MarkDuplicates Tracking 1568382 as yet unmatched pairs. 90081 records in RAM.
INFO 2026-06-08 09:05:26 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:65,088,518
INFO 2026-06-08 09:05:26 MarkDuplicates Tracking 1566655 as yet unmatched pairs. 88322 records in RAM.
INFO 2026-06-08 09:05:28 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:70,275,542
INFO 2026-06-08 09:05:28 MarkDuplicates Tracking 1563010 as yet unmatched pairs. 84652 records in RAM.
INFO 2026-06-08 09:05:30 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 2s. Last read position: chr2:74,426,313
INFO 2026-06-08 09:05:30 MarkDuplicates Tracking 1560155 as yet unmatched pairs. 81779 records in RAM.
INFO 2026-06-08 09:05:32 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:79,157,284
INFO 2026-06-08 09:05:32 MarkDuplicates Tracking 1557668 as yet unmatched pairs. 79260 records in RAM.
INFO 2026-06-08 09:05:33 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:86,466,748
INFO 2026-06-08 09:05:33 MarkDuplicates Tracking 1554530 as yet unmatched pairs. 76079 records in RAM.
INFO 2026-06-08 09:05:35 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:95,281,288
INFO 2026-06-08 09:05:35 MarkDuplicates Tracking 1552583 as yet unmatched pairs. 74102 records in RAM.
INFO 2026-06-08 09:05:37 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:97,532,328
INFO 2026-06-08 09:05:37 MarkDuplicates Tracking 1550158 as yet unmatched pairs. 71649 records in RAM.
INFO 2026-06-08 09:05:38 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:101,844,269
INFO 2026-06-08 09:05:38 MarkDuplicates Tracking 1547012 as yet unmatched pairs. 68467 records in RAM.
INFO 2026-06-08 09:05:40 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:108,746,774
INFO 2026-06-08 09:05:40 MarkDuplicates Tracking 1546117 as yet unmatched pairs. 67549 records in RAM.
INFO 2026-06-08 09:05:42 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:108,782,388
INFO 2026-06-08 09:05:42 MarkDuplicates Tracking 1543980 as yet unmatched pairs. 65403 records in RAM.
INFO 2026-06-08 09:05:43 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:110,535,256
INFO 2026-06-08 09:05:43 MarkDuplicates Tracking 1541647 as yet unmatched pairs. 63055 records in RAM.
INFO 2026-06-08 09:05:44 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:113,132,896
INFO 2026-06-08 09:05:44 MarkDuplicates Tracking 1541019 as yet unmatched pairs. 62407 records in RAM.
INFO 2026-06-08 09:05:46 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:127,317,698
INFO 2026-06-08 09:05:46 MarkDuplicates Tracking 1537934 as yet unmatched pairs. 59281 records in RAM.
INFO 2026-06-08 09:05:47 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:131,492,270
INFO 2026-06-08 09:05:47 MarkDuplicates Tracking 1534587 as yet unmatched pairs. 55903 records in RAM.
INFO 2026-06-08 09:05:49 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:152,626,631
INFO 2026-06-08 09:05:49 MarkDuplicates Tracking 1532075 as yet unmatched pairs. 53361 records in RAM.
INFO 2026-06-08 09:05:50 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:163,611,711
INFO 2026-06-08 09:05:50 MarkDuplicates Tracking 1529287 as yet unmatched pairs. 50541 records in RAM.
INFO 2026-06-08 09:05:52 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:172,467,427
INFO 2026-06-08 09:05:52 MarkDuplicates Tracking 1527058 as yet unmatched pairs. 48262 records in RAM.
INFO 2026-06-08 09:05:53 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:177,231,214
INFO 2026-06-08 09:05:53 MarkDuplicates Tracking 1524583 as yet unmatched pairs. 45729 records in RAM.
INFO 2026-06-08 09:05:55 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:182,981,251
INFO 2026-06-08 09:05:55 MarkDuplicates Tracking 1522115 as yet unmatched pairs. 43229 records in RAM.
INFO 2026-06-08 09:05:57 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:189,052,143
INFO 2026-06-08 09:05:57 MarkDuplicates Tracking 1518597 as yet unmatched pairs. 39684 records in RAM.
INFO 2026-06-08 09:05:58 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:197,013,531
INFO 2026-06-08 09:05:58 MarkDuplicates Tracking 1515568 as yet unmatched pairs. 36619 records in RAM.
INFO 2026-06-08 09:06:00 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:201,129,868
INFO 2026-06-08 09:06:00 MarkDuplicates Tracking 1513524 as yet unmatched pairs. 34553 records in RAM.
INFO 2026-06-08 09:06:01 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:206,162,073
INFO 2026-06-08 09:06:01 MarkDuplicates Tracking 1512448 as yet unmatched pairs. 33428 records in RAM.
INFO 2026-06-08 09:06:04 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 2s. Last read position: chr2:215,372,000
INFO 2026-06-08 09:06:04 MarkDuplicates Tracking 1512797 as yet unmatched pairs. 33763 records in RAM.
INFO 2026-06-08 09:06:06 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:215,386,861
INFO 2026-06-08 09:06:06 MarkDuplicates Tracking 1511420 as yet unmatched pairs. 32377 records in RAM.
INFO 2026-06-08 09:06:07 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:215,420,766
INFO 2026-06-08 09:06:07 MarkDuplicates Tracking 1504707 as yet unmatched pairs. 25661 records in RAM.
INFO 2026-06-08 09:06:09 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:218,217,465
INFO 2026-06-08 09:06:09 MarkDuplicates Tracking 1499962 as yet unmatched pairs. 20887 records in RAM.
INFO 2026-06-08 09:06:11 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:219,224,190
INFO 2026-06-08 09:06:11 MarkDuplicates Tracking 1496281 as yet unmatched pairs. 17162 records in RAM.
INFO 2026-06-08 09:06:13 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:227,813,896
INFO 2026-06-08 09:06:13 MarkDuplicates Tracking 1493610 as yet unmatched pairs. 14466 records in RAM.
INFO 2026-06-08 09:06:14 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:231,456,054
INFO 2026-06-08 09:06:14 MarkDuplicates Tracking 1491262 as yet unmatched pairs. 12092 records in RAM.
INFO 2026-06-08 09:06:16 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:233,713,742
INFO 2026-06-08 09:06:16 MarkDuplicates Tracking 1487494 as yet unmatched pairs. 8299 records in RAM.
INFO 2026-06-08 09:06:17 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:237,540,399
INFO 2026-06-08 09:06:17 MarkDuplicates Tracking 1485145 as yet unmatched pairs. 5892 records in RAM.
INFO 2026-06-08 09:06:19 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:241,242,667
INFO 2026-06-08 09:06:19 MarkDuplicates Tracking 1481623 as yet unmatched pairs. 2326 records in RAM.
INFO 2026-06-08 09:06:21 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 2s. Last read position: chr3:9,677,357
INFO 2026-06-08 09:06:21 MarkDuplicates Tracking 1478169 as yet unmatched pairs. 85840 records in RAM.
INFO 2026-06-08 09:06:23 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr3:12,618,547
INFO 2026-06-08 09:06:23 MarkDuplicates Tracking 1477061 as yet unmatched pairs. 84715 records in RAM.
INFO 2026-06-08 09:06:24 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr3:23,918,486
INFO 2026-06-08 09:06:24 MarkDuplicates Tracking 1472731 as yet unmatched pairs. 80337 records in RAM.
INFO 2026-06-08 09:06:26 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr3:36,833,211
INFO 2026-06-08 09:06:26 MarkDuplicates Tracking 1469933 as yet unmatched pairs. 77494 records in RAM.
INFO 2026-06-08 09:06:27 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr3:39,410,841
INFO 2026-06-08 09:06:27 MarkDuplicates Tracking 1468747 as yet unmatched pairs. 76268 records in RAM.
INFO 2026-06-08 09:06:29 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr3:42,638,077
INFO 2026-06-08 09:06:29 MarkDuplicates Tracking 1464407 as yet unmatched pairs. 71908 records in RAM.
INFO 2026-06-08 09:06:30 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:47,003,951
INFO 2026-06-08 09:06:30 MarkDuplicates Tracking 1461727 as yet unmatched pairs. 69202 records in RAM.
INFO 2026-06-08 09:06:32 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr3:48,412,742
INFO 2026-06-08 09:06:32 MarkDuplicates Tracking 1458715 as yet unmatched pairs. 66173 records in RAM.
INFO 2026-06-08 09:06:33 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr3:49,015,698
INFO 2026-06-08 09:06:33 MarkDuplicates Tracking 1455124 as yet unmatched pairs. 62564 records in RAM.
INFO 2026-06-08 09:06:35 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr3:49,674,518
INFO 2026-06-08 09:06:35 MarkDuplicates Tracking 1452013 as yet unmatched pairs. 59428 records in RAM.
INFO 2026-06-08 09:06:37 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:50,610,433
INFO 2026-06-08 09:06:37 MarkDuplicates Tracking 1448555 as yet unmatched pairs. 55945 records in RAM.
INFO 2026-06-08 09:06:38 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:52,505,739
INFO 2026-06-08 09:06:38 MarkDuplicates Tracking 1445824 as yet unmatched pairs. 53202 records in RAM.
INFO 2026-06-08 09:06:39 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr3:57,556,932
INFO 2026-06-08 09:06:39 MarkDuplicates Tracking 1443419 as yet unmatched pairs. 50770 records in RAM.
INFO 2026-06-08 09:06:41 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:58,153,361
INFO 2026-06-08 09:06:41 MarkDuplicates Tracking 1441179 as yet unmatched pairs. 48502 records in RAM.
INFO 2026-06-08 09:06:43 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:70,965,928
INFO 2026-06-08 09:06:43 MarkDuplicates Tracking 1437748 as yet unmatched pairs. 45033 records in RAM.
INFO 2026-06-08 09:06:44 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:100,732,565
INFO 2026-06-08 09:06:44 MarkDuplicates Tracking 1437239 as yet unmatched pairs. 44480 records in RAM.
INFO 2026-06-08 09:06:46 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:113,401,246
INFO 2026-06-08 09:06:46 MarkDuplicates Tracking 1432509 as yet unmatched pairs. 39726 records in RAM.
INFO 2026-06-08 09:06:48 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:122,402,818
INFO 2026-06-08 09:06:48 MarkDuplicates Tracking 1430219 as yet unmatched pairs. 37404 records in RAM.
INFO 2026-06-08 09:06:49 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:124,927,530
INFO 2026-06-08 09:06:49 MarkDuplicates Tracking 1427795 as yet unmatched pairs. 34937 records in RAM.
INFO 2026-06-08 09:06:51 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:128,637,808
INFO 2026-06-08 09:06:51 MarkDuplicates Tracking 1425736 as yet unmatched pairs. 32837 records in RAM.
INFO 2026-06-08 09:06:53 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 2s. Last read position: chr3:132,514,583
INFO 2026-06-08 09:06:53 MarkDuplicates Tracking 1421249 as yet unmatched pairs. 28316 records in RAM.
INFO 2026-06-08 09:06:55 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:141,445,054
INFO 2026-06-08 09:06:55 MarkDuplicates Tracking 1418163 as yet unmatched pairs. 25184 records in RAM.
INFO 2026-06-08 09:06:56 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:150,410,958
INFO 2026-06-08 09:06:56 MarkDuplicates Tracking 1415543 as yet unmatched pairs. 22512 records in RAM.
INFO 2026-06-08 09:06:58 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 2s. Last read position: chr3:160,521,889
INFO 2026-06-08 09:06:58 MarkDuplicates Tracking 1412872 as yet unmatched pairs. 19794 records in RAM.
INFO 2026-06-08 09:07:00 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:172,514,886
INFO 2026-06-08 09:07:00 MarkDuplicates Tracking 1410383 as yet unmatched pairs. 17261 records in RAM.
INFO 2026-06-08 09:07:02 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:184,177,043
INFO 2026-06-08 09:07:02 MarkDuplicates Tracking 1407724 as yet unmatched pairs. 14585 records in RAM.
INFO 2026-06-08 09:07:03 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:185,511,679
INFO 2026-06-08 09:07:03 MarkDuplicates Tracking 1404592 as yet unmatched pairs. 11434 records in RAM.
INFO 2026-06-08 09:07:05 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:188,872,703
INFO 2026-06-08 09:07:05 MarkDuplicates Tracking 1402778 as yet unmatched pairs. 9584 records in RAM.
INFO 2026-06-08 09:07:06 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:195,765,012
INFO 2026-06-08 09:07:06 MarkDuplicates Tracking 1400149 as yet unmatched pairs. 6914 records in RAM.
INFO 2026-06-08 09:07:08 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:195,782,759
INFO 2026-06-08 09:07:08 MarkDuplicates Tracking 1401118 as yet unmatched pairs. 7863 records in RAM.
INFO 2026-06-08 09:07:09 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:195,787,989
INFO 2026-06-08 09:07:09 MarkDuplicates Tracking 1398314 as yet unmatched pairs. 5052 records in RAM.
INFO 2026-06-08 09:07:10 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:196,948,292
INFO 2026-06-08 09:07:10 MarkDuplicates Tracking 1394345 as yet unmatched pairs. 1067 records in RAM.
INFO 2026-06-08 09:07:12 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 2s. Last read position: chr4:1,312,124
INFO 2026-06-08 09:07:12 MarkDuplicates Tracking 1391440 as yet unmatched pairs. 51269 records in RAM.
INFO 2026-06-08 09:07:14 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr4:2,932,056
INFO 2026-06-08 09:07:14 MarkDuplicates Tracking 1388105 as yet unmatched pairs. 47913 records in RAM.
INFO 2026-06-08 09:07:15 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr4:8,227,597
INFO 2026-06-08 09:07:15 MarkDuplicates Tracking 1384654 as yet unmatched pairs. 44422 records in RAM.
INFO 2026-06-08 09:07:17 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr4:24,540,111
INFO 2026-06-08 09:07:17 MarkDuplicates Tracking 1383068 as yet unmatched pairs. 42797 records in RAM.
INFO 2026-06-08 09:07:19 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr4:39,720,059
INFO 2026-06-08 09:07:19 MarkDuplicates Tracking 1379118 as yet unmatched pairs. 38816 records in RAM.
INFO 2026-06-08 09:07:21 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr4:48,586,717
INFO 2026-06-08 09:07:21 MarkDuplicates Tracking 1376576 as yet unmatched pairs. 36240 records in RAM.
INFO 2026-06-08 09:07:22 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr4:56,911,392
INFO 2026-06-08 09:07:22 MarkDuplicates Tracking 1373847 as yet unmatched pairs. 33491 records in RAM.
INFO 2026-06-08 09:07:25 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 2s. Last read position: chr4:71,453,497
INFO 2026-06-08 09:07:25 MarkDuplicates Tracking 1371052 as yet unmatched pairs. 30680 records in RAM.
INFO 2026-06-08 09:07:26 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr4:76,169,965
INFO 2026-06-08 09:07:26 MarkDuplicates Tracking 1368332 as yet unmatched pairs. 27931 records in RAM.
INFO 2026-06-08 09:07:28 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr4:82,426,030
INFO 2026-06-08 09:07:28 MarkDuplicates Tracking 1365616 as yet unmatched pairs. 25186 records in RAM.
INFO 2026-06-08 09:07:29 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr4:87,494,397
INFO 2026-06-08 09:07:29 MarkDuplicates Tracking 1362688 as yet unmatched pairs. 22227 records in RAM.
INFO 2026-06-08 09:07:31 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr4:102,802,604
INFO 2026-06-08 09:07:31 MarkDuplicates Tracking 1363999 as yet unmatched pairs. 23492 records in RAM.
INFO 2026-06-08 09:07:32 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr4:113,647,780
INFO 2026-06-08 09:07:32 MarkDuplicates Tracking 1357798 as yet unmatched pairs. 17265 records in RAM.
INFO 2026-06-08 09:07:34 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr4:125,422,656
INFO 2026-06-08 09:07:34 MarkDuplicates Tracking 1355069 as yet unmatched pairs. 14500 records in RAM.
INFO 2026-06-08 09:07:35 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr4:145,117,363
INFO 2026-06-08 09:07:35 MarkDuplicates Tracking 1352796 as yet unmatched pairs. 12185 records in RAM.
INFO 2026-06-08 09:07:37 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr4:151,175,604
INFO 2026-06-08 09:07:37 MarkDuplicates Tracking 1350628 as yet unmatched pairs. 9971 records in RAM.
INFO 2026-06-08 09:07:39 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr4:168,903,836
INFO 2026-06-08 09:07:39 MarkDuplicates Tracking 1347503 as yet unmatched pairs. 6807 records in RAM.
INFO 2026-06-08 09:07:40 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:185,751,873
INFO 2026-06-08 09:07:40 MarkDuplicates Tracking 1344582 as yet unmatched pairs. 3862 records in RAM.
INFO 2026-06-08 09:07:42 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr4:186,706,594
INFO 2026-06-08 09:07:42 MarkDuplicates Tracking 1342900 as yet unmatched pairs. 2166 records in RAM.
INFO 2026-06-08 09:07:44 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 2s. Last read position: chr5:1,326,635
INFO 2026-06-08 09:07:44 MarkDuplicates Tracking 1339201 as yet unmatched pairs. 74236 records in RAM.
INFO 2026-06-08 09:07:46 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr5:14,358,188
INFO 2026-06-08 09:07:46 MarkDuplicates Tracking 1337043 as yet unmatched pairs. 72058 records in RAM.
INFO 2026-06-08 09:07:47 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr5:16,769,153
INFO 2026-06-08 09:07:47 MarkDuplicates Tracking 1332886 as yet unmatched pairs. 67881 records in RAM.
INFO 2026-06-08 09:07:49 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr5:37,227,570
INFO 2026-06-08 09:07:49 MarkDuplicates Tracking 1330364 as yet unmatched pairs. 65330 records in RAM.
INFO 2026-06-08 09:07:51 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr5:52,801,645
INFO 2026-06-08 09:07:51 MarkDuplicates Tracking 1327874 as yet unmatched pairs. 62814 records in RAM.
INFO 2026-06-08 09:07:53 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr5:65,576,954
INFO 2026-06-08 09:07:53 MarkDuplicates Tracking 1325084 as yet unmatched pairs. 59971 records in RAM.
INFO 2026-06-08 09:07:55 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr5:71,035,670
INFO 2026-06-08 09:07:55 MarkDuplicates Tracking 1323099 as yet unmatched pairs. 57952 records in RAM.
INFO 2026-06-08 09:07:57 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 2s. Last read position: chr5:75,359,190
INFO 2026-06-08 09:07:57 MarkDuplicates Tracking 1320459 as yet unmatched pairs. 55293 records in RAM.
INFO 2026-06-08 09:07:58 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr5:82,276,116
INFO 2026-06-08 09:07:58 MarkDuplicates Tracking 1322775 as yet unmatched pairs. 57575 records in RAM.
INFO 2026-06-08 09:08:00 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr5:96,662,487
INFO 2026-06-08 09:08:00 MarkDuplicates Tracking 1315605 as yet unmatched pairs. 50362 records in RAM.
INFO 2026-06-08 09:08:01 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr5:109,842,347
INFO 2026-06-08 09:08:01 MarkDuplicates Tracking 1312664 as yet unmatched pairs. 47394 records in RAM.
INFO 2026-06-08 09:08:03 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr5:126,552,106
INFO 2026-06-08 09:08:03 MarkDuplicates Tracking 1309863 as yet unmatched pairs. 44532 records in RAM.
INFO 2026-06-08 09:08:05 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr5:132,896,622
INFO 2026-06-08 09:08:05 MarkDuplicates Tracking 1306837 as yet unmatched pairs. 41457 records in RAM.
INFO 2026-06-08 09:08:06 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr5:136,063,214
INFO 2026-06-08 09:08:06 MarkDuplicates Tracking 1304145 as yet unmatched pairs. 38754 records in RAM.
INFO 2026-06-08 09:08:08 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:139,321,928
INFO 2026-06-08 09:08:08 MarkDuplicates Tracking 1301673 as yet unmatched pairs. 36253 records in RAM.
INFO 2026-06-08 09:08:09 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr5:141,516,898
INFO 2026-06-08 09:08:09 MarkDuplicates Tracking 1298947 as yet unmatched pairs. 33493 records in RAM.
INFO 2026-06-08 09:08:11 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr5:146,160,412
INFO 2026-06-08 09:08:11 MarkDuplicates Tracking 1295998 as yet unmatched pairs. 30504 records in RAM.
INFO 2026-06-08 09:08:12 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:150,133,682
INFO 2026-06-08 09:08:12 MarkDuplicates Tracking 1294136 as yet unmatched pairs. 28612 records in RAM.
INFO 2026-06-08 09:08:14 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,305
INFO 2026-06-08 09:08:14 MarkDuplicates Tracking 1299854 as yet unmatched pairs. 34317 records in RAM.
INFO 2026-06-08 09:08:15 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:151,799,908
INFO 2026-06-08 09:08:15 MarkDuplicates Tracking 1287498 as yet unmatched pairs. 21934 records in RAM.
INFO 2026-06-08 09:08:17 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr5:163,441,939
INFO 2026-06-08 09:08:17 MarkDuplicates Tracking 1284701 as yet unmatched pairs. 19104 records in RAM.
INFO 2026-06-08 09:08:18 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr5:171,391,705
INFO 2026-06-08 09:08:18 MarkDuplicates Tracking 1290738 as yet unmatched pairs. 25131 records in RAM.
INFO 2026-06-08 09:08:20 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:171,410,530
INFO 2026-06-08 09:08:20 MarkDuplicates Tracking 1302179 as yet unmatched pairs. 36546 records in RAM.
INFO 2026-06-08 09:08:22 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr5:177,093,728
INFO 2026-06-08 09:08:22 MarkDuplicates Tracking 1276854 as yet unmatched pairs. 11195 records in RAM.
INFO 2026-06-08 09:08:23 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:178,712,654
INFO 2026-06-08 09:08:23 MarkDuplicates Tracking 1273421 as yet unmatched pairs. 7746 records in RAM.
INFO 2026-06-08 09:08:25 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr5:179,821,050
INFO 2026-06-08 09:08:25 MarkDuplicates Tracking 1275735 as yet unmatched pairs. 10052 records in RAM.
INFO 2026-06-08 09:08:28 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 2s. Last read position: chr5:180,792,722
INFO 2026-06-08 09:08:28 MarkDuplicates Tracking 1267479 as yet unmatched pairs. 1785 records in RAM.
INFO 2026-06-08 09:08:30 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 2s. Last read position: chr6:2,948,938
INFO 2026-06-08 09:08:30 MarkDuplicates Tracking 1264956 as yet unmatched pairs. 84568 records in RAM.
INFO 2026-06-08 09:08:32 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr6:7,289,822
INFO 2026-06-08 09:08:32 MarkDuplicates Tracking 1264286 as yet unmatched pairs. 83871 records in RAM.
INFO 2026-06-08 09:08:33 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr6:11,190,284
INFO 2026-06-08 09:08:33 MarkDuplicates Tracking 1258982 as yet unmatched pairs. 78550 records in RAM.
INFO 2026-06-08 09:08:35 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr6:24,716,173
INFO 2026-06-08 09:08:35 MarkDuplicates Tracking 1256170 as yet unmatched pairs. 75701 records in RAM.
INFO 2026-06-08 09:08:37 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr6:26,217,238
INFO 2026-06-08 09:08:37 MarkDuplicates Tracking 1253395 as yet unmatched pairs. 72904 records in RAM.
INFO 2026-06-08 09:08:38 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr6:27,831,408
INFO 2026-06-08 09:08:38 MarkDuplicates Tracking 1250073 as yet unmatched pairs. 69570 records in RAM.
INFO 2026-06-08 09:08:40 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr6:30,342,059
INFO 2026-06-08 09:08:40 MarkDuplicates Tracking 1247335 as yet unmatched pairs. 66816 records in RAM.
INFO 2026-06-08 09:08:41 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr6:31,142,835
INFO 2026-06-08 09:08:41 MarkDuplicates Tracking 1244401 as yet unmatched pairs. 63864 records in RAM.
INFO 2026-06-08 09:08:43 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:31,641,826
INFO 2026-06-08 09:08:43 MarkDuplicates Tracking 1242134 as yet unmatched pairs. 61579 records in RAM.
INFO 2026-06-08 09:08:44 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,339
INFO 2026-06-08 09:08:44 MarkDuplicates Tracking 1240248 as yet unmatched pairs. 59685 records in RAM.
INFO 2026-06-08 09:08:46 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:32,578,816
INFO 2026-06-08 09:08:46 MarkDuplicates Tracking 1236744 as yet unmatched pairs. 56159 records in RAM.
INFO 2026-06-08 09:08:47 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr6:33,305,255
INFO 2026-06-08 09:08:47 MarkDuplicates Tracking 1234132 as yet unmatched pairs. 53531 records in RAM.
INFO 2026-06-08 09:08:49 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:34,418,390
INFO 2026-06-08 09:08:49 MarkDuplicates Tracking 1231991 as yet unmatched pairs. 51384 records in RAM.
INFO 2026-06-08 09:08:50 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr6:37,171,296
INFO 2026-06-08 09:08:50 MarkDuplicates Tracking 1227534 as yet unmatched pairs. 46913 records in RAM.
INFO 2026-06-08 09:08:52 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:43,071,593
INFO 2026-06-08 09:08:52 MarkDuplicates Tracking 1224680 as yet unmatched pairs. 44026 records in RAM.
INFO 2026-06-08 09:08:54 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:44,253,599
INFO 2026-06-08 09:08:54 MarkDuplicates Tracking 1222795 as yet unmatched pairs. 42128 records in RAM.
INFO 2026-06-08 09:08:55 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:56,463,659
INFO 2026-06-08 09:08:55 MarkDuplicates Tracking 1219203 as yet unmatched pairs. 38464 records in RAM.
INFO 2026-06-08 09:08:57 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr6:70,475,723
INFO 2026-06-08 09:08:57 MarkDuplicates Tracking 1217162 as yet unmatched pairs. 36387 records in RAM.
INFO 2026-06-08 09:08:59 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr6:75,695,831
INFO 2026-06-08 09:08:59 MarkDuplicates Tracking 1213908 as yet unmatched pairs. 33106 records in RAM.
INFO 2026-06-08 09:09:01 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 2s. Last read position: chr6:85,637,055
INFO 2026-06-08 09:09:01 MarkDuplicates Tracking 1211218 as yet unmatched pairs. 30358 records in RAM.
INFO 2026-06-08 09:09:03 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:100,629,030
INFO 2026-06-08 09:09:03 MarkDuplicates Tracking 1208464 as yet unmatched pairs. 27552 records in RAM.
INFO 2026-06-08 09:09:04 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr6:109,382,268
INFO 2026-06-08 09:09:04 MarkDuplicates Tracking 1206081 as yet unmatched pairs. 25144 records in RAM.
INFO 2026-06-08 09:09:06 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:117,602,090
INFO 2026-06-08 09:09:06 MarkDuplicates Tracking 1203542 as yet unmatched pairs. 22572 records in RAM.
INFO 2026-06-08 09:09:07 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr6:131,740,375
INFO 2026-06-08 09:09:07 MarkDuplicates Tracking 1200196 as yet unmatched pairs. 19191 records in RAM.
INFO 2026-06-08 09:09:09 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr6:138,092,209
INFO 2026-06-08 09:09:09 MarkDuplicates Tracking 1198740 as yet unmatched pairs. 17693 records in RAM.
INFO 2026-06-08 09:09:10 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:147,204,559
INFO 2026-06-08 09:09:10 MarkDuplicates Tracking 1194651 as yet unmatched pairs. 13590 records in RAM.
INFO 2026-06-08 09:09:12 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr6:156,777,804
INFO 2026-06-08 09:09:12 MarkDuplicates Tracking 1191616 as yet unmatched pairs. 10538 records in RAM.
INFO 2026-06-08 09:09:13 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:158,769,854
INFO 2026-06-08 09:09:13 MarkDuplicates Tracking 1189043 as yet unmatched pairs. 7946 records in RAM.
INFO 2026-06-08 09:09:15 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:159,682,531
INFO 2026-06-08 09:09:15 MarkDuplicates Tracking 1186185 as yet unmatched pairs. 5068 records in RAM.
INFO 2026-06-08 09:09:16 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr6:167,918,798
INFO 2026-06-08 09:09:16 MarkDuplicates Tracking 1183186 as yet unmatched pairs. 2047 records in RAM.
INFO 2026-06-08 09:09:19 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 2s. Last read position: chr7:1,487,770
INFO 2026-06-08 09:09:19 MarkDuplicates Tracking 1179649 as yet unmatched pairs. 111821 records in RAM.
INFO 2026-06-08 09:09:21 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr7:5,388,506
INFO 2026-06-08 09:09:21 MarkDuplicates Tracking 1176780 as yet unmatched pairs. 108925 records in RAM.
INFO 2026-06-08 09:09:23 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 2s. Last read position: chr7:5,528,323
INFO 2026-06-08 09:09:23 MarkDuplicates Tracking 1185527 as yet unmatched pairs. 117660 records in RAM.
INFO 2026-06-08 09:09:25 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,546
INFO 2026-06-08 09:09:25 MarkDuplicates Tracking 1175208 as yet unmatched pairs. 107330 records in RAM.
INFO 2026-06-08 09:09:26 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr7:11,040,692
INFO 2026-06-08 09:09:26 MarkDuplicates Tracking 1166958 as yet unmatched pairs. 99056 records in RAM.
INFO 2026-06-08 09:09:28 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr7:16,801,162
INFO 2026-06-08 09:09:28 MarkDuplicates Tracking 1170559 as yet unmatched pairs. 102642 records in RAM.
INFO 2026-06-08 09:09:30 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr7:26,185,319
INFO 2026-06-08 09:09:30 MarkDuplicates Tracking 1162492 as yet unmatched pairs. 94560 records in RAM.
INFO 2026-06-08 09:09:32 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr7:33,357,839
INFO 2026-06-08 09:09:32 MarkDuplicates Tracking 1159133 as yet unmatched pairs. 91169 records in RAM.
INFO 2026-06-08 09:09:33 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr7:44,112,742
INFO 2026-06-08 09:09:33 MarkDuplicates Tracking 1156936 as yet unmatched pairs. 88935 records in RAM.
INFO 2026-06-08 09:09:35 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr7:50,539,939
INFO 2026-06-08 09:09:35 MarkDuplicates Tracking 1153333 as yet unmatched pairs. 85299 records in RAM.
INFO 2026-06-08 09:09:36 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:66,076,054
INFO 2026-06-08 09:09:36 MarkDuplicates Tracking 1150733 as yet unmatched pairs. 82669 records in RAM.
INFO 2026-06-08 09:09:38 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:73,465,431
INFO 2026-06-08 09:09:38 MarkDuplicates Tracking 1148928 as yet unmatched pairs. 80844 records in RAM.
INFO 2026-06-08 09:09:39 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:75,192,944
INFO 2026-06-08 09:09:39 MarkDuplicates Tracking 1146156 as yet unmatched pairs. 78056 records in RAM.
INFO 2026-06-08 09:09:41 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:76,429,623
INFO 2026-06-08 09:09:41 MarkDuplicates Tracking 1143449 as yet unmatched pairs. 75348 records in RAM.
INFO 2026-06-08 09:09:42 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:90,413,150
INFO 2026-06-08 09:09:42 MarkDuplicates Tracking 1141822 as yet unmatched pairs. 73702 records in RAM.
INFO 2026-06-08 09:09:44 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr7:92,623,041
INFO 2026-06-08 09:09:44 MarkDuplicates Tracking 1138733 as yet unmatched pairs. 70603 records in RAM.
INFO 2026-06-08 09:09:45 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:97,908,332
INFO 2026-06-08 09:09:45 MarkDuplicates Tracking 1135452 as yet unmatched pairs. 67288 records in RAM.
INFO 2026-06-08 09:09:47 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:99,650,093
INFO 2026-06-08 09:09:47 MarkDuplicates Tracking 1133752 as yet unmatched pairs. 65557 records in RAM.
INFO 2026-06-08 09:09:48 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr7:100,805,534
INFO 2026-06-08 09:09:48 MarkDuplicates Tracking 1129600 as yet unmatched pairs. 61388 records in RAM.
INFO 2026-06-08 09:09:50 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 2s. Last read position: chr7:100,991,027
INFO 2026-06-08 09:09:50 MarkDuplicates Tracking 1127635 as yet unmatched pairs. 59404 records in RAM.
INFO 2026-06-08 09:09:52 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr7:100,992,728
INFO 2026-06-08 09:09:52 MarkDuplicates Tracking 1126112 as yet unmatched pairs. 57874 records in RAM.
INFO 2026-06-08 09:09:53 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,192
INFO 2026-06-08 09:09:53 MarkDuplicates Tracking 1125435 as yet unmatched pairs. 57196 records in RAM.
INFO 2026-06-08 09:09:54 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,700
INFO 2026-06-08 09:09:54 MarkDuplicates Tracking 1126201 as yet unmatched pairs. 57962 records in RAM.
INFO 2026-06-08 09:09:56 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,175
INFO 2026-06-08 09:09:56 MarkDuplicates Tracking 1124365 as yet unmatched pairs. 56125 records in RAM.
INFO 2026-06-08 09:09:57 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,876
INFO 2026-06-08 09:09:57 MarkDuplicates Tracking 1125263 as yet unmatched pairs. 57023 records in RAM.
INFO 2026-06-08 09:09:58 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,206
INFO 2026-06-08 09:09:58 MarkDuplicates Tracking 1125443 as yet unmatched pairs. 57203 records in RAM.
INFO 2026-06-08 09:09:59 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,028
INFO 2026-06-08 09:09:59 MarkDuplicates Tracking 1125174 as yet unmatched pairs. 56933 records in RAM.
INFO 2026-06-08 09:10:00 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 0s. Last read position: chr7:100,996,313
INFO 2026-06-08 09:10:00 MarkDuplicates Tracking 1126853 as yet unmatched pairs. 58611 records in RAM.
INFO 2026-06-08 09:10:02 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,524
INFO 2026-06-08 09:10:02 MarkDuplicates Tracking 1124426 as yet unmatched pairs. 56184 records in RAM.
INFO 2026-06-08 09:10:03 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,890
INFO 2026-06-08 09:10:03 MarkDuplicates Tracking 1140469 as yet unmatched pairs. 72227 records in RAM.
INFO 2026-06-08 09:10:04 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,172
INFO 2026-06-08 09:10:04 MarkDuplicates Tracking 1130200 as yet unmatched pairs. 61943 records in RAM.
INFO 2026-06-08 09:10:06 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,564
INFO 2026-06-08 09:10:06 MarkDuplicates Tracking 1124021 as yet unmatched pairs. 55762 records in RAM.
INFO 2026-06-08 09:10:07 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,954
INFO 2026-06-08 09:10:07 MarkDuplicates Tracking 1138371 as yet unmatched pairs. 70107 records in RAM.
INFO 2026-06-08 09:10:08 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,286
INFO 2026-06-08 09:10:08 MarkDuplicates Tracking 1118042 as yet unmatched pairs. 49778 records in RAM.
INFO 2026-06-08 09:10:09 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 0s. Last read position: chr7:100,998,572
INFO 2026-06-08 09:10:09 MarkDuplicates Tracking 1120763 as yet unmatched pairs. 52499 records in RAM.
INFO 2026-06-08 09:10:10 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,839
INFO 2026-06-08 09:10:10 MarkDuplicates Tracking 1117090 as yet unmatched pairs. 48826 records in RAM.
INFO 2026-06-08 09:10:11 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,358
INFO 2026-06-08 09:10:11 MarkDuplicates Tracking 1118113 as yet unmatched pairs. 49844 records in RAM.
INFO 2026-06-08 09:10:12 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,759
INFO 2026-06-08 09:10:12 MarkDuplicates Tracking 1121580 as yet unmatched pairs. 53308 records in RAM.
INFO 2026-06-08 09:10:14 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,120
INFO 2026-06-08 09:10:14 MarkDuplicates Tracking 1117657 as yet unmatched pairs. 49384 records in RAM.
INFO 2026-06-08 09:10:16 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,628
INFO 2026-06-08 09:10:16 MarkDuplicates Tracking 1114516 as yet unmatched pairs. 46232 records in RAM.
INFO 2026-06-08 09:10:17 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,937
INFO 2026-06-08 09:10:17 MarkDuplicates Tracking 1120672 as yet unmatched pairs. 52386 records in RAM.
INFO 2026-06-08 09:10:18 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,287
INFO 2026-06-08 09:10:18 MarkDuplicates Tracking 1120268 as yet unmatched pairs. 51978 records in RAM.
INFO 2026-06-08 09:10:20 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,561
INFO 2026-06-08 09:10:20 MarkDuplicates Tracking 1109539 as yet unmatched pairs. 41249 records in RAM.
INFO 2026-06-08 09:10:21 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,848
INFO 2026-06-08 09:10:21 MarkDuplicates Tracking 1110882 as yet unmatched pairs. 42592 records in RAM.
INFO 2026-06-08 09:10:22 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,432
INFO 2026-06-08 09:10:22 MarkDuplicates Tracking 1112228 as yet unmatched pairs. 43932 records in RAM.
INFO 2026-06-08 09:10:24 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,996
INFO 2026-06-08 09:10:24 MarkDuplicates Tracking 1116873 as yet unmatched pairs. 48575 records in RAM.
INFO 2026-06-08 09:11:25 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 60s. Last read position: chr7:101,003,937
INFO 2026-06-08 09:11:25 MarkDuplicates Tracking 1103292 as yet unmatched pairs. 34991 records in RAM.
INFO 2026-06-08 09:11:26 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr7:101,005,331
INFO 2026-06-08 09:11:26 MarkDuplicates Tracking 1102940 as yet unmatched pairs. 34635 records in RAM.
INFO 2026-06-08 09:11:28 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr7:101,038,044
INFO 2026-06-08 09:11:28 MarkDuplicates Tracking 1102051 as yet unmatched pairs. 33732 records in RAM.
INFO 2026-06-08 09:11:29 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr7:101,240,139
INFO 2026-06-08 09:11:29 MarkDuplicates Tracking 1097674 as yet unmatched pairs. 29342 records in RAM.
INFO 2026-06-08 09:11:31 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr7:102,944,404
INFO 2026-06-08 09:11:31 MarkDuplicates Tracking 1095926 as yet unmatched pairs. 27569 records in RAM.
INFO 2026-06-08 09:11:32 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr7:107,791,129
INFO 2026-06-08 09:11:32 MarkDuplicates Tracking 1094070 as yet unmatched pairs. 25687 records in RAM.
INFO 2026-06-08 09:11:34 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr7:116,769,782
INFO 2026-06-08 09:11:34 MarkDuplicates Tracking 1093038 as yet unmatched pairs. 24640 records in RAM.
INFO 2026-06-08 09:11:36 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr7:127,704,936
INFO 2026-06-08 09:11:36 MarkDuplicates Tracking 1092205 as yet unmatched pairs. 23794 records in RAM.
INFO 2026-06-08 09:11:37 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr7:129,397,291
INFO 2026-06-08 09:11:37 MarkDuplicates Tracking 1085677 as yet unmatched pairs. 17237 records in RAM.
INFO 2026-06-08 09:11:39 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr7:137,905,757
INFO 2026-06-08 09:11:39 MarkDuplicates Tracking 1082701 as yet unmatched pairs. 14217 records in RAM.
INFO 2026-06-08 09:11:40 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr7:140,559,671
INFO 2026-06-08 09:11:40 MarkDuplicates Tracking 1079535 as yet unmatched pairs. 11034 records in RAM.
INFO 2026-06-08 09:11:42 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 2s. Last read position: chr7:144,183,719
INFO 2026-06-08 09:11:42 MarkDuplicates Tracking 1077013 as yet unmatched pairs. 8500 records in RAM.
INFO 2026-06-08 09:11:43 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr7:149,004,064
INFO 2026-06-08 09:11:43 MarkDuplicates Tracking 1076470 as yet unmatched pairs. 7948 records in RAM.
INFO 2026-06-08 09:11:45 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr7:151,224,976
INFO 2026-06-08 09:11:45 MarkDuplicates Tracking 1072306 as yet unmatched pairs. 3765 records in RAM.
INFO 2026-06-08 09:11:46 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr7:157,366,549
INFO 2026-06-08 09:11:46 MarkDuplicates Tracking 1069535 as yet unmatched pairs. 936 records in RAM.
INFO 2026-06-08 09:11:48 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 2s. Last read position: chr8:11,845,726
INFO 2026-06-08 09:11:48 MarkDuplicates Tracking 1068586 as yet unmatched pairs. 62546 records in RAM.
INFO 2026-06-08 09:11:51 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 2s. Last read position: chr8:22,025,759
INFO 2026-06-08 09:11:51 MarkDuplicates Tracking 1063504 as yet unmatched pairs. 57456 records in RAM.
INFO 2026-06-08 09:11:53 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr8:23,437,220
INFO 2026-06-08 09:11:53 MarkDuplicates Tracking 1060932 as yet unmatched pairs. 54878 records in RAM.
INFO 2026-06-08 09:11:55 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr8:29,180,157
INFO 2026-06-08 09:11:55 MarkDuplicates Tracking 1057863 as yet unmatched pairs. 51783 records in RAM.
INFO 2026-06-08 09:11:56 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr8:37,877,433
INFO 2026-06-08 09:11:56 MarkDuplicates Tracking 1054844 as yet unmatched pairs. 48753 records in RAM.
INFO 2026-06-08 09:11:58 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr8:38,840,253
INFO 2026-06-08 09:11:58 MarkDuplicates Tracking 1053920 as yet unmatched pairs. 47819 records in RAM.
INFO 2026-06-08 09:11:59 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr8:47,782,562
INFO 2026-06-08 09:11:59 MarkDuplicates Tracking 1049194 as yet unmatched pairs. 43067 records in RAM.
INFO 2026-06-08 09:12:01 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr8:60,558,857
INFO 2026-06-08 09:12:01 MarkDuplicates Tracking 1046905 as yet unmatched pairs. 40763 records in RAM.
INFO 2026-06-08 09:12:03 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:70,121,371
INFO 2026-06-08 09:12:03 MarkDuplicates Tracking 1043901 as yet unmatched pairs. 37741 records in RAM.
INFO 2026-06-08 09:12:04 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr8:81,753,220
INFO 2026-06-08 09:12:04 MarkDuplicates Tracking 1041378 as yet unmatched pairs. 35195 records in RAM.
INFO 2026-06-08 09:12:06 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr8:94,534,954
INFO 2026-06-08 09:12:06 MarkDuplicates Tracking 1038732 as yet unmatched pairs. 32534 records in RAM.
INFO 2026-06-08 09:12:07 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr8:100,705,629
INFO 2026-06-08 09:12:07 MarkDuplicates Tracking 1037052 as yet unmatched pairs. 30814 records in RAM.
INFO 2026-06-08 09:12:09 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr8:102,651,838
INFO 2026-06-08 09:12:09 MarkDuplicates Tracking 1033220 as yet unmatched pairs. 26973 records in RAM.
INFO 2026-06-08 09:12:11 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 2s. Last read position: chr8:121,632,339
INFO 2026-06-08 09:12:11 MarkDuplicates Tracking 1030184 as yet unmatched pairs. 23916 records in RAM.
INFO 2026-06-08 09:12:13 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr8:131,946,532
INFO 2026-06-08 09:12:13 MarkDuplicates Tracking 1027125 as yet unmatched pairs. 20840 records in RAM.
INFO 2026-06-08 09:12:14 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr8:143,581,151
INFO 2026-06-08 09:12:14 MarkDuplicates Tracking 1024558 as yet unmatched pairs. 18254 records in RAM.
INFO 2026-06-08 09:12:16 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,741
INFO 2026-06-08 09:12:16 MarkDuplicates Tracking 1021798 as yet unmatched pairs. 15481 records in RAM.
INFO 2026-06-08 09:12:17 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,327
INFO 2026-06-08 09:12:17 MarkDuplicates Tracking 1021767 as yet unmatched pairs. 15450 records in RAM.
INFO 2026-06-08 09:12:18 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,913
INFO 2026-06-08 09:12:18 MarkDuplicates Tracking 1019818 as yet unmatched pairs. 13495 records in RAM.
INFO 2026-06-08 09:12:19 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr8:143,916,893
INFO 2026-06-08 09:12:19 MarkDuplicates Tracking 1018492 as yet unmatched pairs. 12165 records in RAM.
INFO 2026-06-08 09:12:21 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 2s. Last read position: chr8:143,925,416
INFO 2026-06-08 09:12:21 MarkDuplicates Tracking 1013656 as yet unmatched pairs. 7317 records in RAM.
INFO 2026-06-08 09:12:23 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr8:144,317,996
INFO 2026-06-08 09:12:23 MarkDuplicates Tracking 1009870 as yet unmatched pairs. 3517 records in RAM.
INFO 2026-06-08 09:12:25 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 2s. Last read position: chr9:711,259
INFO 2026-06-08 09:12:25 MarkDuplicates Tracking 1006444 as yet unmatched pairs. 64289 records in RAM.
INFO 2026-06-08 09:12:27 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr9:14,150,145
INFO 2026-06-08 09:12:27 MarkDuplicates Tracking 1004368 as yet unmatched pairs. 62160 records in RAM.
INFO 2026-06-08 09:12:28 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr9:32,440,507
INFO 2026-06-08 09:12:28 MarkDuplicates Tracking 1000788 as yet unmatched pairs. 58549 records in RAM.
INFO 2026-06-08 09:12:30 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr9:34,635,826
INFO 2026-06-08 09:12:30 MarkDuplicates Tracking 998085 as yet unmatched pairs. 55819 records in RAM.
INFO 2026-06-08 09:12:32 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr9:35,740,611
INFO 2026-06-08 09:12:32 MarkDuplicates Tracking 994726 as yet unmatched pairs. 52446 records in RAM.
INFO 2026-06-08 09:12:33 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr9:68,818,523
INFO 2026-06-08 09:12:33 MarkDuplicates Tracking 993187 as yet unmatched pairs. 50873 records in RAM.
INFO 2026-06-08 09:12:35 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr9:76,189,678
INFO 2026-06-08 09:12:35 MarkDuplicates Tracking 990151 as yet unmatched pairs. 47817 records in RAM.
INFO 2026-06-08 09:12:37 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr9:86,027,869
INFO 2026-06-08 09:12:37 MarkDuplicates Tracking 987545 as yet unmatched pairs. 45186 records in RAM.
INFO 2026-06-08 09:12:39 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:93,320,363
INFO 2026-06-08 09:12:39 MarkDuplicates Tracking 984047 as yet unmatched pairs. 41666 records in RAM.
INFO 2026-06-08 09:12:40 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr9:98,133,119
INFO 2026-06-08 09:12:40 MarkDuplicates Tracking 981493 as yet unmatched pairs. 39091 records in RAM.
INFO 2026-06-08 09:12:42 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr9:106,935,524
INFO 2026-06-08 09:12:42 MarkDuplicates Tracking 978666 as yet unmatched pairs. 36227 records in RAM.
INFO 2026-06-08 09:12:44 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr9:112,251,031
INFO 2026-06-08 09:12:44 MarkDuplicates Tracking 976033 as yet unmatched pairs. 33569 records in RAM.
INFO 2026-06-08 09:12:45 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr9:115,086,624
INFO 2026-06-08 09:12:45 MarkDuplicates Tracking 972797 as yet unmatched pairs. 30318 records in RAM.
INFO 2026-06-08 09:12:47 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr9:123,173,799
INFO 2026-06-08 09:12:47 MarkDuplicates Tracking 969977 as yet unmatched pairs. 27483 records in RAM.
INFO 2026-06-08 09:12:48 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr9:127,449,318
INFO 2026-06-08 09:12:48 MarkDuplicates Tracking 972715 as yet unmatched pairs. 30212 records in RAM.
INFO 2026-06-08 09:12:50 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr9:128,355,734
INFO 2026-06-08 09:12:50 MarkDuplicates Tracking 963525 as yet unmatched pairs. 20998 records in RAM.
INFO 2026-06-08 09:12:52 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr9:129,009,281
INFO 2026-06-08 09:12:52 MarkDuplicates Tracking 960599 as yet unmatched pairs. 18051 records in RAM.
INFO 2026-06-08 09:12:55 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 2s. Last read position: chr9:131,197,871
INFO 2026-06-08 09:12:55 MarkDuplicates Tracking 957693 as yet unmatched pairs. 15117 records in RAM.
INFO 2026-06-08 09:12:56 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr9:133,348,968
INFO 2026-06-08 09:12:56 MarkDuplicates Tracking 955130 as yet unmatched pairs. 12521 records in RAM.
INFO 2026-06-08 09:12:58 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr9:136,224,015
INFO 2026-06-08 09:12:58 MarkDuplicates Tracking 951525 as yet unmatched pairs. 8899 records in RAM.
INFO 2026-06-08 09:12:59 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr9:136,839,746
INFO 2026-06-08 09:12:59 MarkDuplicates Tracking 948161 as yet unmatched pairs. 5520 records in RAM.
INFO 2026-06-08 09:13:01 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr9:137,243,133
INFO 2026-06-08 09:13:01 MarkDuplicates Tracking 947044 as yet unmatched pairs. 4399 records in RAM.
INFO 2026-06-08 09:13:03 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr10:3,781,939
INFO 2026-06-08 09:13:03 MarkDuplicates Tracking 941993 as yet unmatched pairs. 57121 records in RAM.
INFO 2026-06-08 09:13:04 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr10:13,110,317
INFO 2026-06-08 09:13:04 MarkDuplicates Tracking 938629 as yet unmatched pairs. 53748 records in RAM.
INFO 2026-06-08 09:13:06 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr10:24,585,296
INFO 2026-06-08 09:13:06 MarkDuplicates Tracking 935906 as yet unmatched pairs. 50996 records in RAM.
INFO 2026-06-08 09:13:07 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr10:32,015,529
INFO 2026-06-08 09:13:07 MarkDuplicates Tracking 934728 as yet unmatched pairs. 49791 records in RAM.
INFO 2026-06-08 09:13:09 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr10:32,287,001
INFO 2026-06-08 09:13:09 MarkDuplicates Tracking 930995 as yet unmatched pairs. 46055 records in RAM.
INFO 2026-06-08 09:13:10 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr10:45,443,803
INFO 2026-06-08 09:13:10 MarkDuplicates Tracking 928127 as yet unmatched pairs. 43173 records in RAM.
INFO 2026-06-08 09:13:12 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr10:48,011,567
INFO 2026-06-08 09:13:12 MarkDuplicates Tracking 926381 as yet unmatched pairs. 41417 records in RAM.
INFO 2026-06-08 09:13:13 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr10:61,940,273
INFO 2026-06-08 09:13:13 MarkDuplicates Tracking 923710 as yet unmatched pairs. 38727 records in RAM.
INFO 2026-06-08 09:13:16 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 2s. Last read position: chr10:70,161,665
INFO 2026-06-08 09:13:16 MarkDuplicates Tracking 922048 as yet unmatched pairs. 37053 records in RAM.
INFO 2026-06-08 09:13:18 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr10:73,768,826
INFO 2026-06-08 09:13:18 MarkDuplicates Tracking 918334 as yet unmatched pairs. 33316 records in RAM.
INFO 2026-06-08 09:13:19 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr10:79,162,126
INFO 2026-06-08 09:13:19 MarkDuplicates Tracking 915451 as yet unmatched pairs. 30402 records in RAM.
INFO 2026-06-08 09:13:20 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr10:87,714,763
INFO 2026-06-08 09:13:20 MarkDuplicates Tracking 913027 as yet unmatched pairs. 27952 records in RAM.
INFO 2026-06-08 09:13:22 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr10:93,351,715
INFO 2026-06-08 09:13:22 MarkDuplicates Tracking 911120 as yet unmatched pairs. 26024 records in RAM.
INFO 2026-06-08 09:13:23 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr10:96,160,031
INFO 2026-06-08 09:13:23 MarkDuplicates Tracking 907378 as yet unmatched pairs. 22250 records in RAM.
INFO 2026-06-08 09:13:25 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr10:99,955,884
INFO 2026-06-08 09:13:25 MarkDuplicates Tracking 904225 as yet unmatched pairs. 19093 records in RAM.
INFO 2026-06-08 09:13:26 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr10:102,370,227
INFO 2026-06-08 09:13:26 MarkDuplicates Tracking 901510 as yet unmatched pairs. 16371 records in RAM.
INFO 2026-06-08 09:13:28 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr10:109,865,303
INFO 2026-06-08 09:13:28 MarkDuplicates Tracking 898907 as yet unmatched pairs. 13758 records in RAM.
INFO 2026-06-08 09:13:29 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr10:114,487,958
INFO 2026-06-08 09:13:29 MarkDuplicates Tracking 896290 as yet unmatched pairs. 11115 records in RAM.
INFO 2026-06-08 09:13:31 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr10:119,898,557
INFO 2026-06-08 09:13:31 MarkDuplicates Tracking 894005 as yet unmatched pairs. 8820 records in RAM.
INFO 2026-06-08 09:13:32 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr10:122,592,484
INFO 2026-06-08 09:13:32 MarkDuplicates Tracking 892814 as yet unmatched pairs. 7609 records in RAM.
INFO 2026-06-08 09:13:34 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr10:125,833,937
INFO 2026-06-08 09:13:34 MarkDuplicates Tracking 888201 as yet unmatched pairs. 2980 records in RAM.
INFO 2026-06-08 09:13:36 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 2s. Last read position: chr11:205,305
INFO 2026-06-08 09:13:36 MarkDuplicates Tracking 885520 as yet unmatched pairs. 143452 records in RAM.
INFO 2026-06-08 09:13:38 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr11:607,180
INFO 2026-06-08 09:13:38 MarkDuplicates Tracking 882706 as yet unmatched pairs. 140624 records in RAM.
INFO 2026-06-08 09:13:40 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr11:904,826
INFO 2026-06-08 09:13:40 MarkDuplicates Tracking 878771 as yet unmatched pairs. 136674 records in RAM.
INFO 2026-06-08 09:13:41 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:1,081,673
INFO 2026-06-08 09:13:41 MarkDuplicates Tracking 878755 as yet unmatched pairs. 136652 records in RAM.
INFO 2026-06-08 09:13:43 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr11:1,086,259
INFO 2026-06-08 09:13:43 MarkDuplicates Tracking 874110 as yet unmatched pairs. 131990 records in RAM.
INFO 2026-06-08 09:13:45 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:1,092,978
INFO 2026-06-08 09:13:45 MarkDuplicates Tracking 871444 as yet unmatched pairs. 129318 records in RAM.
INFO 2026-06-08 09:13:47 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr11:1,182,674
INFO 2026-06-08 09:13:47 MarkDuplicates Tracking 867155 as yet unmatched pairs. 124997 records in RAM.
INFO 2026-06-08 09:13:48 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:1,184,133
INFO 2026-06-08 09:13:48 MarkDuplicates Tracking 871071 as yet unmatched pairs. 128909 records in RAM.
INFO 2026-06-08 09:13:50 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:1,185,096
INFO 2026-06-08 09:13:50 MarkDuplicates Tracking 865851 as yet unmatched pairs. 123689 records in RAM.
INFO 2026-06-08 09:13:51 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:1,186,986
INFO 2026-06-08 09:13:51 MarkDuplicates Tracking 871009 as yet unmatched pairs. 128845 records in RAM.
INFO 2026-06-08 09:13:52 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr11:1,188,816
INFO 2026-06-08 09:13:52 MarkDuplicates Tracking 872983 as yet unmatched pairs. 130813 records in RAM.
INFO 2026-06-08 09:13:54 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:1,190,943
INFO 2026-06-08 09:13:54 MarkDuplicates Tracking 863604 as yet unmatched pairs. 121417 records in RAM.
INFO 2026-06-08 09:13:55 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr11:1,191,898
INFO 2026-06-08 09:13:55 MarkDuplicates Tracking 857345 as yet unmatched pairs. 115147 records in RAM.
INFO 2026-06-08 09:13:56 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:1,237,110
INFO 2026-06-08 09:13:56 MarkDuplicates Tracking 854488 as yet unmatched pairs. 112274 records in RAM.
INFO 2026-06-08 09:13:58 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,069
INFO 2026-06-08 09:13:58 MarkDuplicates Tracking 850485 as yet unmatched pairs. 108257 records in RAM.
INFO 2026-06-08 09:13:59 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,985
INFO 2026-06-08 09:13:59 MarkDuplicates Tracking 855937 as yet unmatched pairs. 113700 records in RAM.
INFO 2026-06-08 09:14:00 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,654
INFO 2026-06-08 09:14:00 MarkDuplicates Tracking 848980 as yet unmatched pairs. 106742 records in RAM.
INFO 2026-06-08 09:14:01 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:1,245,393
INFO 2026-06-08 09:14:01 MarkDuplicates Tracking 848932 as yet unmatched pairs. 106694 records in RAM.
INFO 2026-06-08 09:14:03 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr11:1,246,858
INFO 2026-06-08 09:14:03 MarkDuplicates Tracking 849871 as yet unmatched pairs. 107631 records in RAM.
INFO 2026-06-08 09:14:04 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,732
INFO 2026-06-08 09:14:04 MarkDuplicates Tracking 847852 as yet unmatched pairs. 105608 records in RAM.
INFO 2026-06-08 09:14:06 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,529
INFO 2026-06-08 09:14:06 MarkDuplicates Tracking 845748 as yet unmatched pairs. 103497 records in RAM.
INFO 2026-06-08 09:14:07 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:1,249,427
INFO 2026-06-08 09:14:07 MarkDuplicates Tracking 846231 as yet unmatched pairs. 103980 records in RAM.
INFO 2026-06-08 09:14:08 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:1,250,512
INFO 2026-06-08 09:14:08 MarkDuplicates Tracking 842315 as yet unmatched pairs. 100058 records in RAM.
INFO 2026-06-08 09:14:10 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 2s. Last read position: chr11:1,257,541
INFO 2026-06-08 09:14:10 MarkDuplicates Tracking 839462 as yet unmatched pairs. 97204 records in RAM.
INFO 2026-06-08 09:14:12 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:3,018,737
INFO 2026-06-08 09:14:12 MarkDuplicates Tracking 834351 as yet unmatched pairs. 92085 records in RAM.
INFO 2026-06-08 09:14:14 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:6,640,417
INFO 2026-06-08 09:14:14 MarkDuplicates Tracking 831110 as yet unmatched pairs. 88826 records in RAM.
INFO 2026-06-08 09:14:15 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:10,797,832
INFO 2026-06-08 09:14:15 MarkDuplicates Tracking 829897 as yet unmatched pairs. 87604 records in RAM.
INFO 2026-06-08 09:14:17 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:14,474,559
INFO 2026-06-08 09:14:17 MarkDuplicates Tracking 825849 as yet unmatched pairs. 83547 records in RAM.
INFO 2026-06-08 09:14:18 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr11:18,405,458
INFO 2026-06-08 09:14:18 MarkDuplicates Tracking 824220 as yet unmatched pairs. 81904 records in RAM.
INFO 2026-06-08 09:14:20 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:34,052,565
INFO 2026-06-08 09:14:20 MarkDuplicates Tracking 820511 as yet unmatched pairs. 78171 records in RAM.
INFO 2026-06-08 09:14:22 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:44,171,624
INFO 2026-06-08 09:14:22 MarkDuplicates Tracking 817384 as yet unmatched pairs. 75019 records in RAM.
INFO 2026-06-08 09:14:23 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:46,376,523
INFO 2026-06-08 09:14:23 MarkDuplicates Tracking 813969 as yet unmatched pairs. 71601 records in RAM.
INFO 2026-06-08 09:14:24 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr11:47,821,688
INFO 2026-06-08 09:14:24 MarkDuplicates Tracking 810998 as yet unmatched pairs. 68616 records in RAM.
INFO 2026-06-08 09:14:26 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:57,815,421
INFO 2026-06-08 09:14:26 MarkDuplicates Tracking 809247 as yet unmatched pairs. 66863 records in RAM.
INFO 2026-06-08 09:14:28 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr11:61,366,058
INFO 2026-06-08 09:14:28 MarkDuplicates Tracking 805303 as yet unmatched pairs. 62907 records in RAM.
INFO 2026-06-08 09:14:29 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:62,520,086
INFO 2026-06-08 09:14:29 MarkDuplicates Tracking 803771 as yet unmatched pairs. 61365 records in RAM.
INFO 2026-06-08 09:14:30 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:62,527,491
INFO 2026-06-08 09:14:30 MarkDuplicates Tracking 802631 as yet unmatched pairs. 60220 records in RAM.
INFO 2026-06-08 09:14:32 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr11:62,560,118
INFO 2026-06-08 09:14:32 MarkDuplicates Tracking 798251 as yet unmatched pairs. 55829 records in RAM.
INFO 2026-06-08 09:14:34 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr11:63,764,570
INFO 2026-06-08 09:14:34 MarkDuplicates Tracking 794655 as yet unmatched pairs. 52212 records in RAM.
INFO 2026-06-08 09:14:35 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr11:64,769,968
INFO 2026-06-08 09:14:35 MarkDuplicates Tracking 791888 as yet unmatched pairs. 49434 records in RAM.
INFO 2026-06-08 09:14:38 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 2s. Last read position: chr11:65,531,577
INFO 2026-06-08 09:14:38 MarkDuplicates Tracking 788137 as yet unmatched pairs. 45614 records in RAM.
INFO 2026-06-08 09:14:39 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr11:65,867,937
INFO 2026-06-08 09:14:39 MarkDuplicates Tracking 784530 as yet unmatched pairs. 41997 records in RAM.
INFO 2026-06-08 09:14:41 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr11:66,858,664
INFO 2026-06-08 09:14:41 MarkDuplicates Tracking 781308 as yet unmatched pairs. 38752 records in RAM.
INFO 2026-06-08 09:14:42 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr11:68,027,748
INFO 2026-06-08 09:14:42 MarkDuplicates Tracking 777882 as yet unmatched pairs. 35320 records in RAM.
INFO 2026-06-08 09:14:44 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr11:69,643,915
INFO 2026-06-08 09:14:44 MarkDuplicates Tracking 779738 as yet unmatched pairs. 37170 records in RAM.
INFO 2026-06-08 09:14:45 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr11:72,016,068
INFO 2026-06-08 09:14:45 MarkDuplicates Tracking 771684 as yet unmatched pairs. 29112 records in RAM.
INFO 2026-06-08 09:14:47 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr11:75,400,700
INFO 2026-06-08 09:14:47 MarkDuplicates Tracking 769861 as yet unmatched pairs. 27276 records in RAM.
INFO 2026-06-08 09:14:48 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:83,169,363
INFO 2026-06-08 09:14:48 MarkDuplicates Tracking 765491 as yet unmatched pairs. 22891 records in RAM.
INFO 2026-06-08 09:14:50 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr11:95,783,125
INFO 2026-06-08 09:14:50 MarkDuplicates Tracking 762660 as yet unmatched pairs. 20051 records in RAM.
INFO 2026-06-08 09:14:51 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr11:102,863,143
INFO 2026-06-08 09:14:51 MarkDuplicates Tracking 760066 as yet unmatched pairs. 17431 records in RAM.
INFO 2026-06-08 09:14:53 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr11:114,444,571
INFO 2026-06-08 09:14:53 MarkDuplicates Tracking 757196 as yet unmatched pairs. 14557 records in RAM.
INFO 2026-06-08 09:14:54 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr11:118,503,731
INFO 2026-06-08 09:14:54 MarkDuplicates Tracking 754336 as yet unmatched pairs. 11692 records in RAM.
INFO 2026-06-08 09:14:56 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr11:119,335,808
INFO 2026-06-08 09:14:56 MarkDuplicates Tracking 751327 as yet unmatched pairs. 8673 records in RAM.
INFO 2026-06-08 09:14:57 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr11:123,060,128
INFO 2026-06-08 09:14:57 MarkDuplicates Tracking 750383 as yet unmatched pairs. 7722 records in RAM.
INFO 2026-06-08 09:14:59 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr11:128,970,918
INFO 2026-06-08 09:14:59 MarkDuplicates Tracking 746399 as yet unmatched pairs. 3720 records in RAM.
INFO 2026-06-08 09:15:02 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 3s. Last read position: chr12:313,177
INFO 2026-06-08 09:15:02 MarkDuplicates Tracking 742632 as yet unmatched pairs. 91053 records in RAM.
INFO 2026-06-08 09:15:04 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 2s. Last read position: chr12:6,018,420
INFO 2026-06-08 09:15:04 MarkDuplicates Tracking 739748 as yet unmatched pairs. 88156 records in RAM.
INFO 2026-06-08 09:15:06 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr12:6,598,408
INFO 2026-06-08 09:15:06 MarkDuplicates Tracking 736897 as yet unmatched pairs. 85292 records in RAM.
INFO 2026-06-08 09:15:07 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr12:7,157,562
INFO 2026-06-08 09:15:07 MarkDuplicates Tracking 733572 as yet unmatched pairs. 81965 records in RAM.
INFO 2026-06-08 09:15:08 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:12,338,431
INFO 2026-06-08 09:15:08 MarkDuplicates Tracking 730937 as yet unmatched pairs. 79326 records in RAM.
INFO 2026-06-08 09:15:10 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr12:15,665,802
INFO 2026-06-08 09:15:10 MarkDuplicates Tracking 728336 as yet unmatched pairs. 76709 records in RAM.
INFO 2026-06-08 09:15:12 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr12:27,755,229
INFO 2026-06-08 09:15:12 MarkDuplicates Tracking 725631 as yet unmatched pairs. 73988 records in RAM.
INFO 2026-06-08 09:15:13 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr12:43,795,331
INFO 2026-06-08 09:15:13 MarkDuplicates Tracking 722471 as yet unmatched pairs. 70812 records in RAM.
INFO 2026-06-08 09:15:15 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr12:48,782,616
INFO 2026-06-08 09:15:15 MarkDuplicates Tracking 719772 as yet unmatched pairs. 68099 records in RAM.
INFO 2026-06-08 09:15:16 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,745
INFO 2026-06-08 09:15:16 MarkDuplicates Tracking 718923 as yet unmatched pairs. 67248 records in RAM.
INFO 2026-06-08 09:15:18 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr12:50,177,212
INFO 2026-06-08 09:15:18 MarkDuplicates Tracking 715527 as yet unmatched pairs. 63845 records in RAM.
INFO 2026-06-08 09:15:19 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:52,898,681
INFO 2026-06-08 09:15:19 MarkDuplicates Tracking 715796 as yet unmatched pairs. 64100 records in RAM.
INFO 2026-06-08 09:15:21 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr12:52,951,833
INFO 2026-06-08 09:15:21 MarkDuplicates Tracking 709549 as yet unmatched pairs. 57846 records in RAM.
INFO 2026-06-08 09:15:22 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:53,459,397
INFO 2026-06-08 09:15:22 MarkDuplicates Tracking 707648 as yet unmatched pairs. 55936 records in RAM.
INFO 2026-06-08 09:15:24 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr12:54,396,311
INFO 2026-06-08 09:15:24 MarkDuplicates Tracking 703599 as yet unmatched pairs. 51874 records in RAM.
INFO 2026-06-08 09:15:25 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr12:56,134,344
INFO 2026-06-08 09:15:25 MarkDuplicates Tracking 701052 as yet unmatched pairs. 49317 records in RAM.
INFO 2026-06-08 09:15:27 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr12:56,615,502
INFO 2026-06-08 09:15:27 MarkDuplicates Tracking 697766 as yet unmatched pairs. 46026 records in RAM.
INFO 2026-06-08 09:15:29 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr12:57,096,928
INFO 2026-06-08 09:15:29 MarkDuplicates Tracking 696862 as yet unmatched pairs. 45109 records in RAM.
INFO 2026-06-08 09:15:31 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 2s. Last read position: chr12:57,190,903
INFO 2026-06-08 09:15:31 MarkDuplicates Tracking 692144 as yet unmatched pairs. 40391 records in RAM.
INFO 2026-06-08 09:15:33 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr12:58,874,146
INFO 2026-06-08 09:15:33 MarkDuplicates Tracking 689329 as yet unmatched pairs. 37567 records in RAM.
INFO 2026-06-08 09:15:34 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr12:68,731,629
INFO 2026-06-08 09:15:34 MarkDuplicates Tracking 686602 as yet unmatched pairs. 34823 records in RAM.
INFO 2026-06-08 09:15:36 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr12:76,030,548
INFO 2026-06-08 09:15:36 MarkDuplicates Tracking 683837 as yet unmatched pairs. 32046 records in RAM.
INFO 2026-06-08 09:15:38 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr12:93,409,932
INFO 2026-06-08 09:15:38 MarkDuplicates Tracking 681579 as yet unmatched pairs. 29778 records in RAM.
INFO 2026-06-08 09:15:39 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr12:101,286,405
INFO 2026-06-08 09:15:39 MarkDuplicates Tracking 678228 as yet unmatched pairs. 26411 records in RAM.
INFO 2026-06-08 09:15:41 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr12:104,757,364
INFO 2026-06-08 09:15:41 MarkDuplicates Tracking 675726 as yet unmatched pairs. 23892 records in RAM.
INFO 2026-06-08 09:15:42 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr12:110,292,022
INFO 2026-06-08 09:15:42 MarkDuplicates Tracking 674388 as yet unmatched pairs. 22543 records in RAM.
INFO 2026-06-08 09:15:44 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr12:112,252,430
INFO 2026-06-08 09:15:44 MarkDuplicates Tracking 669824 as yet unmatched pairs. 17964 records in RAM.
INFO 2026-06-08 09:15:45 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr12:115,983,482
INFO 2026-06-08 09:15:45 MarkDuplicates Tracking 666920 as yet unmatched pairs. 15056 records in RAM.
INFO 2026-06-08 09:15:47 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr12:120,216,440
INFO 2026-06-08 09:15:47 MarkDuplicates Tracking 664017 as yet unmatched pairs. 12137 records in RAM.
INFO 2026-06-08 09:15:48 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr12:122,133,477
INFO 2026-06-08 09:15:48 MarkDuplicates Tracking 661632 as yet unmatched pairs. 9751 records in RAM.
INFO 2026-06-08 09:15:50 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr12:124,012,290
INFO 2026-06-08 09:15:50 MarkDuplicates Tracking 658142 as yet unmatched pairs. 6253 records in RAM.
INFO 2026-06-08 09:15:52 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr12:131,766,259
INFO 2026-06-08 09:15:52 MarkDuplicates Tracking 655101 as yet unmatched pairs. 3208 records in RAM.
INFO 2026-06-08 09:15:53 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr13:19,671,849
INFO 2026-06-08 09:15:53 MarkDuplicates Tracking 651946 as yet unmatched pairs. 27258 records in RAM.
INFO 2026-06-08 09:15:55 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr13:23,341,124
INFO 2026-06-08 09:15:55 MarkDuplicates Tracking 649149 as yet unmatched pairs. 24442 records in RAM.
INFO 2026-06-08 09:15:57 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr13:29,767,190
INFO 2026-06-08 09:15:57 MarkDuplicates Tracking 646722 as yet unmatched pairs. 22005 records in RAM.
INFO 2026-06-08 09:15:58 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr13:41,193,360
INFO 2026-06-08 09:15:58 MarkDuplicates Tracking 643898 as yet unmatched pairs. 19164 records in RAM.
INFO 2026-06-08 09:16:00 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr13:46,003,225
INFO 2026-06-08 09:16:00 MarkDuplicates Tracking 641149 as yet unmatched pairs. 16403 records in RAM.
INFO 2026-06-08 09:16:01 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr13:53,028,869
INFO 2026-06-08 09:16:01 MarkDuplicates Tracking 640354 as yet unmatched pairs. 15593 records in RAM.
INFO 2026-06-08 09:16:02 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr13:75,800,853
INFO 2026-06-08 09:16:02 MarkDuplicates Tracking 639127 as yet unmatched pairs. 14354 records in RAM.
INFO 2026-06-08 09:16:04 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr13:97,357,562
INFO 2026-06-08 09:16:04 MarkDuplicates Tracking 633675 as yet unmatched pairs. 8891 records in RAM.
INFO 2026-06-08 09:16:05 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr13:108,230,021
INFO 2026-06-08 09:16:05 MarkDuplicates Tracking 630176 as yet unmatched pairs. 5387 records in RAM.
INFO 2026-06-08 09:16:07 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr13:112,823,387
INFO 2026-06-08 09:16:07 MarkDuplicates Tracking 627182 as yet unmatched pairs. 2390 records in RAM.
INFO 2026-06-08 09:16:09 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 2s. Last read position: chr14:20,693,574
INFO 2026-06-08 09:16:09 MarkDuplicates Tracking 624244 as yet unmatched pairs. 59265 records in RAM.
INFO 2026-06-08 09:16:11 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr14:22,872,321
INFO 2026-06-08 09:16:11 MarkDuplicates Tracking 621277 as yet unmatched pairs. 56293 records in RAM.
INFO 2026-06-08 09:16:12 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr14:24,138,218
INFO 2026-06-08 09:16:12 MarkDuplicates Tracking 618682 as yet unmatched pairs. 53691 records in RAM.
INFO 2026-06-08 09:16:14 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr14:31,134,933
INFO 2026-06-08 09:16:14 MarkDuplicates Tracking 614951 as yet unmatched pairs. 49952 records in RAM.
INFO 2026-06-08 09:16:15 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr14:39,092,618
INFO 2026-06-08 09:16:15 MarkDuplicates Tracking 612551 as yet unmatched pairs. 47538 records in RAM.
INFO 2026-06-08 09:16:17 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr14:50,772,375
INFO 2026-06-08 09:16:17 MarkDuplicates Tracking 609534 as yet unmatched pairs. 44507 records in RAM.
INFO 2026-06-08 09:16:18 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr14:55,351,668
INFO 2026-06-08 09:16:18 MarkDuplicates Tracking 606793 as yet unmatched pairs. 41758 records in RAM.
INFO 2026-06-08 09:16:21 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 2s. Last read position: chr14:63,967,823
INFO 2026-06-08 09:16:21 MarkDuplicates Tracking 604070 as yet unmatched pairs. 39022 records in RAM.
INFO 2026-06-08 09:16:23 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 2s. Last read position: chr14:67,279,100
INFO 2026-06-08 09:16:23 MarkDuplicates Tracking 601337 as yet unmatched pairs. 36275 records in RAM.
INFO 2026-06-08 09:16:24 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr14:70,732,595
INFO 2026-06-08 09:16:24 MarkDuplicates Tracking 598034 as yet unmatched pairs. 32961 records in RAM.
INFO 2026-06-08 09:16:26 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr14:74,764,075
INFO 2026-06-08 09:16:26 MarkDuplicates Tracking 595382 as yet unmatched pairs. 30294 records in RAM.
INFO 2026-06-08 09:16:27 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr14:81,371,107
INFO 2026-06-08 09:16:27 MarkDuplicates Tracking 592468 as yet unmatched pairs. 27374 records in RAM.
INFO 2026-06-08 09:16:29 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr14:92,154,356
INFO 2026-06-08 09:16:29 MarkDuplicates Tracking 589909 as yet unmatched pairs. 24801 records in RAM.
INFO 2026-06-08 09:16:31 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr14:96,532,331
INFO 2026-06-08 09:16:31 MarkDuplicates Tracking 587829 as yet unmatched pairs. 22714 records in RAM.
INFO 2026-06-08 09:16:32 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr14:102,018,250
INFO 2026-06-08 09:16:32 MarkDuplicates Tracking 584368 as yet unmatched pairs. 19236 records in RAM.
INFO 2026-06-08 09:16:34 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr14:102,968,583
INFO 2026-06-08 09:16:34 MarkDuplicates Tracking 581353 as yet unmatched pairs. 16210 records in RAM.
INFO 2026-06-08 09:16:36 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr14:104,774,952
INFO 2026-06-08 09:16:36 MarkDuplicates Tracking 578518 as yet unmatched pairs. 13365 records in RAM.
INFO 2026-06-08 09:16:37 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr14:104,952,944
INFO 2026-06-08 09:16:37 MarkDuplicates Tracking 574987 as yet unmatched pairs. 9822 records in RAM.
INFO 2026-06-08 09:16:39 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr14:105,588,140
INFO 2026-06-08 09:16:39 MarkDuplicates Tracking 574683 as yet unmatched pairs. 9518 records in RAM.
INFO 2026-06-08 09:16:40 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,414
INFO 2026-06-08 09:16:40 MarkDuplicates Tracking 571687 as yet unmatched pairs. 6520 records in RAM.
INFO 2026-06-08 09:16:42 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,117
INFO 2026-06-08 09:16:42 MarkDuplicates Tracking 568921 as yet unmatched pairs. 3752 records in RAM.
INFO 2026-06-08 09:16:44 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr15:20,439,073
INFO 2026-06-08 09:16:44 MarkDuplicates Tracking 565156 as yet unmatched pairs. 53306 records in RAM.
INFO 2026-06-08 09:16:45 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr15:29,772,082
INFO 2026-06-08 09:16:45 MarkDuplicates Tracking 563474 as yet unmatched pairs. 51617 records in RAM.
INFO 2026-06-08 09:16:47 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr15:34,359,145
INFO 2026-06-08 09:16:47 MarkDuplicates Tracking 560361 as yet unmatched pairs. 48496 records in RAM.
INFO 2026-06-08 09:16:48 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr15:40,356,130
INFO 2026-06-08 09:16:48 MarkDuplicates Tracking 559043 as yet unmatched pairs. 47175 records in RAM.
INFO 2026-06-08 09:16:50 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr15:41,749,727
INFO 2026-06-08 09:16:50 MarkDuplicates Tracking 555233 as yet unmatched pairs. 43351 records in RAM.
INFO 2026-06-08 09:16:51 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr15:43,595,129
INFO 2026-06-08 09:16:51 MarkDuplicates Tracking 552343 as yet unmatched pairs. 40460 records in RAM.
INFO 2026-06-08 09:16:53 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr15:44,555,087
INFO 2026-06-08 09:16:53 MarkDuplicates Tracking 549777 as yet unmatched pairs. 37893 records in RAM.
INFO 2026-06-08 09:16:55 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr15:48,878,343
INFO 2026-06-08 09:16:55 MarkDuplicates Tracking 546407 as yet unmatched pairs. 34511 records in RAM.
INFO 2026-06-08 09:16:56 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr15:55,185,383
INFO 2026-06-08 09:16:56 MarkDuplicates Tracking 544384 as yet unmatched pairs. 32469 records in RAM.
INFO 2026-06-08 09:16:58 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr15:59,231,725
INFO 2026-06-08 09:16:58 MarkDuplicates Tracking 541771 as yet unmatched pairs. 29840 records in RAM.
INFO 2026-06-08 09:16:59 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr15:61,962,840
INFO 2026-06-08 09:16:59 MarkDuplicates Tracking 538511 as yet unmatched pairs. 26579 records in RAM.
INFO 2026-06-08 09:17:01 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr15:64,162,041
INFO 2026-06-08 09:17:01 MarkDuplicates Tracking 537205 as yet unmatched pairs. 25260 records in RAM.
INFO 2026-06-08 09:17:03 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr15:68,054,329
INFO 2026-06-08 09:17:03 MarkDuplicates Tracking 532479 as yet unmatched pairs. 20521 records in RAM.
INFO 2026-06-08 09:17:04 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr15:72,253,389
INFO 2026-06-08 09:17:04 MarkDuplicates Tracking 529806 as yet unmatched pairs. 17841 records in RAM.
INFO 2026-06-08 09:17:06 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr15:74,937,937
INFO 2026-06-08 09:17:06 MarkDuplicates Tracking 526477 as yet unmatched pairs. 14499 records in RAM.
INFO 2026-06-08 09:17:07 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr15:78,293,168
INFO 2026-06-08 09:17:07 MarkDuplicates Tracking 523437 as yet unmatched pairs. 11443 records in RAM.
INFO 2026-06-08 09:17:09 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr15:84,403,430
INFO 2026-06-08 09:17:09 MarkDuplicates Tracking 520632 as yet unmatched pairs. 8621 records in RAM.
INFO 2026-06-08 09:17:10 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr15:89,307,484
INFO 2026-06-08 09:17:10 MarkDuplicates Tracking 518232 as yet unmatched pairs. 6216 records in RAM.
INFO 2026-06-08 09:17:13 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 2s. Last read position: chr15:90,875,725
INFO 2026-06-08 09:17:13 MarkDuplicates Tracking 515251 as yet unmatched pairs. 3231 records in RAM.
INFO 2026-06-08 09:17:17 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 4s. Last read position: chr16:16,306
INFO 2026-06-08 09:17:17 MarkDuplicates Tracking 512048 as yet unmatched pairs. 79511 records in RAM.
INFO 2026-06-08 09:17:19 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr16:765,768
INFO 2026-06-08 09:17:19 MarkDuplicates Tracking 509107 as yet unmatched pairs. 76551 records in RAM.
INFO 2026-06-08 09:17:20 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr16:1,999,652
INFO 2026-06-08 09:17:20 MarkDuplicates Tracking 504920 as yet unmatched pairs. 72352 records in RAM.
INFO 2026-06-08 09:17:22 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:2,761,619
INFO 2026-06-08 09:17:22 MarkDuplicates Tracking 502391 as yet unmatched pairs. 69812 records in RAM.
INFO 2026-06-08 09:17:24 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr16:2,832,078
INFO 2026-06-08 09:17:24 MarkDuplicates Tracking 498660 as yet unmatched pairs. 66072 records in RAM.
INFO 2026-06-08 09:17:25 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr16:4,441,557
INFO 2026-06-08 09:17:25 MarkDuplicates Tracking 495720 as yet unmatched pairs. 63131 records in RAM.
INFO 2026-06-08 09:17:27 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr16:11,730,698
INFO 2026-06-08 09:17:27 MarkDuplicates Tracking 492865 as yet unmatched pairs. 60274 records in RAM.
INFO 2026-06-08 09:17:28 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:14,922,059
INFO 2026-06-08 09:17:28 MarkDuplicates Tracking 490427 as yet unmatched pairs. 57828 records in RAM.
INFO 2026-06-08 09:17:29 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr16:16,263,572
INFO 2026-06-08 09:17:29 MarkDuplicates Tracking 488394 as yet unmatched pairs. 55787 records in RAM.
INFO 2026-06-08 09:17:31 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr16:18,379,702
INFO 2026-06-08 09:17:31 MarkDuplicates Tracking 487652 as yet unmatched pairs. 55036 records in RAM.
INFO 2026-06-08 09:17:32 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr16:19,115,961
INFO 2026-06-08 09:17:32 MarkDuplicates Tracking 485280 as yet unmatched pairs. 52664 records in RAM.
INFO 2026-06-08 09:17:33 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr16:21,439,548
INFO 2026-06-08 09:17:33 MarkDuplicates Tracking 483547 as yet unmatched pairs. 50915 records in RAM.
INFO 2026-06-08 09:17:35 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr16:22,316,640
INFO 2026-06-08 09:17:35 MarkDuplicates Tracking 482360 as yet unmatched pairs. 49723 records in RAM.
INFO 2026-06-08 09:17:36 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr16:23,587,248
INFO 2026-06-08 09:17:36 MarkDuplicates Tracking 481746 as yet unmatched pairs. 49109 records in RAM.
INFO 2026-06-08 09:17:37 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:28,388,181
INFO 2026-06-08 09:17:37 MarkDuplicates Tracking 478929 as yet unmatched pairs. 46276 records in RAM.
INFO 2026-06-08 09:17:39 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr16:29,381,933
INFO 2026-06-08 09:17:39 MarkDuplicates Tracking 476122 as yet unmatched pairs. 43457 records in RAM.
INFO 2026-06-08 09:17:40 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:29,491,790
INFO 2026-06-08 09:17:40 MarkDuplicates Tracking 476503 as yet unmatched pairs. 43837 records in RAM.
INFO 2026-06-08 09:17:42 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr16:30,064,454
INFO 2026-06-08 09:17:42 MarkDuplicates Tracking 472224 as yet unmatched pairs. 39552 records in RAM.
INFO 2026-06-08 09:17:44 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 2s. Last read position: chr16:30,231,425
INFO 2026-06-08 09:17:44 MarkDuplicates Tracking 469845 as yet unmatched pairs. 37163 records in RAM.
INFO 2026-06-08 09:17:46 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 2s. Last read position: chr16:30,768,887
INFO 2026-06-08 09:17:46 MarkDuplicates Tracking 467556 as yet unmatched pairs. 34869 records in RAM.
INFO 2026-06-08 09:17:48 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 2s. Last read position: chr16:31,191,410
INFO 2026-06-08 09:17:48 MarkDuplicates Tracking 466384 as yet unmatched pairs. 33674 records in RAM.
INFO 2026-06-08 09:17:51 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 2s. Last read position: chr16:53,156,401
INFO 2026-06-08 09:17:51 MarkDuplicates Tracking 462391 as yet unmatched pairs. 29675 records in RAM.
INFO 2026-06-08 09:17:53 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr16:57,246,083
INFO 2026-06-08 09:17:53 MarkDuplicates Tracking 458801 as yet unmatched pairs. 26079 records in RAM.
INFO 2026-06-08 09:17:54 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr16:66,617,245
INFO 2026-06-08 09:17:54 MarkDuplicates Tracking 455942 as yet unmatched pairs. 23213 records in RAM.
INFO 2026-06-08 09:17:56 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr16:67,865,153
INFO 2026-06-08 09:17:56 MarkDuplicates Tracking 453686 as yet unmatched pairs. 20947 records in RAM.
INFO 2026-06-08 09:17:57 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr16:69,228,942
INFO 2026-06-08 09:17:57 MarkDuplicates Tracking 449721 as yet unmatched pairs. 16980 records in RAM.
INFO 2026-06-08 09:17:59 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr16:70,664,115
INFO 2026-06-08 09:17:59 MarkDuplicates Tracking 447063 as yet unmatched pairs. 14305 records in RAM.
INFO 2026-06-08 09:18:00 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr16:75,229,765
INFO 2026-06-08 09:18:00 MarkDuplicates Tracking 444335 as yet unmatched pairs. 11575 records in RAM.
INFO 2026-06-08 09:18:02 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr16:84,462,097
INFO 2026-06-08 09:18:02 MarkDuplicates Tracking 440896 as yet unmatched pairs. 8104 records in RAM.
INFO 2026-06-08 09:18:03 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr16:88,646,133
INFO 2026-06-08 09:18:03 MarkDuplicates Tracking 439889 as yet unmatched pairs. 7085 records in RAM.
INFO 2026-06-08 09:18:05 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr16:89,694,996
INFO 2026-06-08 09:18:05 MarkDuplicates Tracking 434665 as yet unmatched pairs. 1858 records in RAM.
INFO 2026-06-08 09:18:08 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 3s. Last read position: chr17:1,361,118
INFO 2026-06-08 09:18:08 MarkDuplicates Tracking 435503 as yet unmatched pairs. 141048 records in RAM.
INFO 2026-06-08 09:18:10 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 2s. Last read position: chr17:1,679,064
INFO 2026-06-08 09:18:10 MarkDuplicates Tracking 428229 as yet unmatched pairs. 133774 records in RAM.
INFO 2026-06-08 09:18:13 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 2s. Last read position: chr17:3,942,624
INFO 2026-06-08 09:18:13 MarkDuplicates Tracking 424897 as yet unmatched pairs. 130438 records in RAM.
INFO 2026-06-08 09:18:14 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr17:4,895,358
INFO 2026-06-08 09:18:14 MarkDuplicates Tracking 421773 as yet unmatched pairs. 127312 records in RAM.
INFO 2026-06-08 09:18:16 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr17:7,012,731
INFO 2026-06-08 09:18:16 MarkDuplicates Tracking 419024 as yet unmatched pairs. 124560 records in RAM.
INFO 2026-06-08 09:18:17 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr17:7,496,052
INFO 2026-06-08 09:18:17 MarkDuplicates Tracking 416040 as yet unmatched pairs. 121568 records in RAM.
INFO 2026-06-08 09:18:19 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr17:7,847,579
INFO 2026-06-08 09:18:19 MarkDuplicates Tracking 412604 as yet unmatched pairs. 118129 records in RAM.
INFO 2026-06-08 09:18:21 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr17:14,345,240
INFO 2026-06-08 09:18:21 MarkDuplicates Tracking 409643 as yet unmatched pairs. 115161 records in RAM.
INFO 2026-06-08 09:19:24 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:16:10s. Time for last 1,000,000: 63s. Last read position: chr17:16,443,879
INFO 2026-06-08 09:19:24 MarkDuplicates Tracking 407365 as yet unmatched pairs. 112873 records in RAM.
INFO 2026-06-08 09:20:34 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 70s. Last read position: chr17:18,317,833
INFO 2026-06-08 09:20:34 MarkDuplicates Tracking 403471 as yet unmatched pairs. 108976 records in RAM.
INFO 2026-06-08 09:20:36 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr17:28,042,926
INFO 2026-06-08 09:20:36 MarkDuplicates Tracking 400778 as yet unmatched pairs. 106278 records in RAM.
INFO 2026-06-08 09:20:37 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr17:29,098,832
INFO 2026-06-08 09:20:37 MarkDuplicates Tracking 398176 as yet unmatched pairs. 103665 records in RAM.
INFO 2026-06-08 09:20:39 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 1s. Last read position: chr17:31,340,503
INFO 2026-06-08 09:20:39 MarkDuplicates Tracking 395297 as yet unmatched pairs. 100785 records in RAM.
INFO 2026-06-08 09:20:41 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr17:35,626,766
INFO 2026-06-08 09:20:41 MarkDuplicates Tracking 392549 as yet unmatched pairs. 98028 records in RAM.
INFO 2026-06-08 09:20:42 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:28s. Time for last 1,000,000: 1s. Last read position: chr17:37,252,899
INFO 2026-06-08 09:20:42 MarkDuplicates Tracking 389636 as yet unmatched pairs. 95113 records in RAM.
INFO 2026-06-08 09:20:44 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:30s. Time for last 1,000,000: 1s. Last read position: chr17:38,914,339
INFO 2026-06-08 09:20:44 MarkDuplicates Tracking 387555 as yet unmatched pairs. 93029 records in RAM.
INFO 2026-06-08 09:20:45 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 1s. Last read position: chr17:39,710,336
INFO 2026-06-08 09:20:45 MarkDuplicates Tracking 387148 as yet unmatched pairs. 92619 records in RAM.
INFO 2026-06-08 09:20:48 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 2s. Last read position: chr17:39,745,739
INFO 2026-06-08 09:20:48 MarkDuplicates Tracking 381080 as yet unmatched pairs. 86551 records in RAM.
INFO 2026-06-08 09:20:50 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 2s. Last read position: chr17:40,876,399
INFO 2026-06-08 09:20:50 MarkDuplicates Tracking 380037 as yet unmatched pairs. 85507 records in RAM.
INFO 2026-06-08 09:20:52 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 2s. Last read position: chr17:41,769,085
INFO 2026-06-08 09:20:52 MarkDuplicates Tracking 375033 as yet unmatched pairs. 80499 records in RAM.
INFO 2026-06-08 09:20:53 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 1s. Last read position: chr17:42,698,602
INFO 2026-06-08 09:20:53 MarkDuplicates Tracking 371369 as yet unmatched pairs. 76830 records in RAM.
INFO 2026-06-08 09:20:55 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr17:44,215,929
INFO 2026-06-08 09:20:55 MarkDuplicates Tracking 368956 as yet unmatched pairs. 74408 records in RAM.
INFO 2026-06-08 09:20:57 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr17:45,514,242
INFO 2026-06-08 09:20:57 MarkDuplicates Tracking 365726 as yet unmatched pairs. 71178 records in RAM.
INFO 2026-06-08 09:20:58 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr17:47,682,403
INFO 2026-06-08 09:20:58 MarkDuplicates Tracking 363574 as yet unmatched pairs. 69025 records in RAM.
INFO 2026-06-08 09:20:59 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr17:50,109,955
INFO 2026-06-08 09:20:59 MarkDuplicates Tracking 360268 as yet unmatched pairs. 65703 records in RAM.
INFO 2026-06-08 09:21:01 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,483
INFO 2026-06-08 09:21:01 MarkDuplicates Tracking 369319 as yet unmatched pairs. 74753 records in RAM.
INFO 2026-06-08 09:21:03 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,464
INFO 2026-06-08 09:21:03 MarkDuplicates Tracking 362644 as yet unmatched pairs. 68076 records in RAM.
INFO 2026-06-08 09:21:04 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,868
INFO 2026-06-08 09:21:04 MarkDuplicates Tracking 361413 as yet unmatched pairs. 66843 records in RAM.
INFO 2026-06-08 09:21:06 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,728
INFO 2026-06-08 09:21:06 MarkDuplicates Tracking 357194 as yet unmatched pairs. 62620 records in RAM.
INFO 2026-06-08 09:21:08 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,510
INFO 2026-06-08 09:21:08 MarkDuplicates Tracking 362891 as yet unmatched pairs. 68311 records in RAM.
INFO 2026-06-08 09:21:09 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,779
INFO 2026-06-08 09:21:09 MarkDuplicates Tracking 345461 as yet unmatched pairs. 50876 records in RAM.
INFO 2026-06-08 09:21:11 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr17:50,987,213
INFO 2026-06-08 09:21:11 MarkDuplicates Tracking 337695 as yet unmatched pairs. 43107 records in RAM.
INFO 2026-06-08 09:21:13 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr17:58,495,506
INFO 2026-06-08 09:21:13 MarkDuplicates Tracking 334269 as yet unmatched pairs. 39677 records in RAM.
INFO 2026-06-08 09:21:14 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr17:59,679,506
INFO 2026-06-08 09:21:14 MarkDuplicates Tracking 336279 as yet unmatched pairs. 41684 records in RAM.
INFO 2026-06-08 09:21:16 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr17:61,403,066
INFO 2026-06-08 09:21:16 MarkDuplicates Tracking 328615 as yet unmatched pairs. 34019 records in RAM.
INFO 2026-06-08 09:21:17 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr17:64,499,853
INFO 2026-06-08 09:21:17 MarkDuplicates Tracking 327560 as yet unmatched pairs. 32962 records in RAM.
INFO 2026-06-08 09:21:19 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr17:67,945,571
INFO 2026-06-08 09:21:19 MarkDuplicates Tracking 323047 as yet unmatched pairs. 28436 records in RAM.
INFO 2026-06-08 09:21:21 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 2s. Last read position: chr17:74,762,091
INFO 2026-06-08 09:21:21 MarkDuplicates Tracking 320400 as yet unmatched pairs. 25784 records in RAM.
INFO 2026-06-08 09:21:22 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr17:75,611,944
INFO 2026-06-08 09:21:22 MarkDuplicates Tracking 317230 as yet unmatched pairs. 22614 records in RAM.
INFO 2026-06-08 09:21:24 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr17:75,890,519
INFO 2026-06-08 09:21:24 MarkDuplicates Tracking 313211 as yet unmatched pairs. 18595 records in RAM.
INFO 2026-06-08 09:21:27 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 2s. Last read position: chr17:77,488,813
INFO 2026-06-08 09:21:27 MarkDuplicates Tracking 310155 as yet unmatched pairs. 15524 records in RAM.
INFO 2026-06-08 09:21:29 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 2s. Last read position: chr17:80,010,400
INFO 2026-06-08 09:21:29 MarkDuplicates Tracking 306665 as yet unmatched pairs. 12028 records in RAM.
INFO 2026-06-08 09:21:31 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr17:81,459,499
INFO 2026-06-08 09:21:31 MarkDuplicates Tracking 303541 as yet unmatched pairs. 8894 records in RAM.
INFO 2026-06-08 09:21:33 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr17:81,846,544
INFO 2026-06-08 09:21:33 MarkDuplicates Tracking 301062 as yet unmatched pairs. 6409 records in RAM.
INFO 2026-06-08 09:21:34 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr17:82,088,531
INFO 2026-06-08 09:21:34 MarkDuplicates Tracking 297191 as yet unmatched pairs. 2535 records in RAM.
INFO 2026-06-08 09:21:36 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 2s. Last read position: chr18:2,908,940
INFO 2026-06-08 09:21:36 MarkDuplicates Tracking 293709 as yet unmatched pairs. 20037 records in RAM.
INFO 2026-06-08 09:21:38 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr18:12,725,449
INFO 2026-06-08 09:21:38 MarkDuplicates Tracking 291071 as yet unmatched pairs. 17397 records in RAM.
INFO 2026-06-08 09:21:40 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr18:25,226,398
INFO 2026-06-08 09:21:40 MarkDuplicates Tracking 288218 as yet unmatched pairs. 14533 records in RAM.
INFO 2026-06-08 09:21:41 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr18:32,412,925
INFO 2026-06-08 09:21:41 MarkDuplicates Tracking 286604 as yet unmatched pairs. 12910 records in RAM.
INFO 2026-06-08 09:21:44 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 2s. Last read position: chr18:49,489,485
INFO 2026-06-08 09:21:44 MarkDuplicates Tracking 284463 as yet unmatched pairs. 10761 records in RAM.
INFO 2026-06-08 09:21:45 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr18:57,652,054
INFO 2026-06-08 09:21:45 MarkDuplicates Tracking 282809 as yet unmatched pairs. 9100 records in RAM.
INFO 2026-06-08 09:21:47 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr18:62,570,104
INFO 2026-06-08 09:21:47 MarkDuplicates Tracking 276864 as yet unmatched pairs. 3148 records in RAM.
INFO 2026-06-08 09:21:50 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 2s. Last read position: chr19:282,141
INFO 2026-06-08 09:21:50 MarkDuplicates Tracking 274545 as yet unmatched pairs. 125215 records in RAM.
INFO 2026-06-08 09:21:52 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr19:805,072
INFO 2026-06-08 09:21:52 MarkDuplicates Tracking 270738 as yet unmatched pairs. 121406 records in RAM.
INFO 2026-06-08 09:21:53 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr19:1,278,867
INFO 2026-06-08 09:21:53 MarkDuplicates Tracking 266766 as yet unmatched pairs. 117424 records in RAM.
INFO 2026-06-08 09:21:56 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 2s. Last read position: chr19:2,116,245
INFO 2026-06-08 09:21:56 MarkDuplicates Tracking 263292 as yet unmatched pairs. 113945 records in RAM.
INFO 2026-06-08 09:21:58 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 2s. Last read position: chr19:3,557,086
INFO 2026-06-08 09:21:58 MarkDuplicates Tracking 259913 as yet unmatched pairs. 110565 records in RAM.
INFO 2026-06-08 09:22:00 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr19:4,817,392
INFO 2026-06-08 09:22:00 MarkDuplicates Tracking 256083 as yet unmatched pairs. 106735 records in RAM.
INFO 2026-06-08 09:22:01 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr19:6,361,868
INFO 2026-06-08 09:22:01 MarkDuplicates Tracking 253206 as yet unmatched pairs. 103851 records in RAM.
INFO 2026-06-08 09:22:03 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr19:7,742,541
INFO 2026-06-08 09:22:03 MarkDuplicates Tracking 249447 as yet unmatched pairs. 100091 records in RAM.
INFO 2026-06-08 09:22:05 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr19:10,258,242
INFO 2026-06-08 09:22:05 MarkDuplicates Tracking 246327 as yet unmatched pairs. 96967 records in RAM.
INFO 2026-06-08 09:22:07 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr19:10,921,427
INFO 2026-06-08 09:22:07 MarkDuplicates Tracking 243209 as yet unmatched pairs. 93847 records in RAM.
INFO 2026-06-08 09:22:09 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 2s. Last read position: chr19:11,831,836
INFO 2026-06-08 09:22:09 MarkDuplicates Tracking 240181 as yet unmatched pairs. 90816 records in RAM.
INFO 2026-06-08 09:22:11 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr19:13,081,838
INFO 2026-06-08 09:22:11 MarkDuplicates Tracking 236957 as yet unmatched pairs. 87592 records in RAM.
INFO 2026-06-08 09:22:12 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr19:14,515,934
INFO 2026-06-08 09:22:12 MarkDuplicates Tracking 234819 as yet unmatched pairs. 85453 records in RAM.
INFO 2026-06-08 09:22:14 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr19:15,264,674
INFO 2026-06-08 09:22:14 MarkDuplicates Tracking 230737 as yet unmatched pairs. 81371 records in RAM.
INFO 2026-06-08 09:22:16 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr19:17,206,060
INFO 2026-06-08 09:22:16 MarkDuplicates Tracking 227390 as yet unmatched pairs. 78024 records in RAM.
INFO 2026-06-08 09:22:17 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr19:18,250,391
INFO 2026-06-08 09:22:17 MarkDuplicates Tracking 224212 as yet unmatched pairs. 74840 records in RAM.
INFO 2026-06-08 09:22:18 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr19:19,492,363
INFO 2026-06-08 09:22:18 MarkDuplicates Tracking 221123 as yet unmatched pairs. 71744 records in RAM.
INFO 2026-06-08 09:22:20 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr19:34,330,335
INFO 2026-06-08 09:22:20 MarkDuplicates Tracking 217683 as yet unmatched pairs. 68294 records in RAM.
INFO 2026-06-08 09:22:22 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr19:35,267,822
INFO 2026-06-08 09:22:22 MarkDuplicates Tracking 214705 as yet unmatched pairs. 65315 records in RAM.
INFO 2026-06-08 09:22:24 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr19:38,164,493
INFO 2026-06-08 09:22:24 MarkDuplicates Tracking 211534 as yet unmatched pairs. 62142 records in RAM.
INFO 2026-06-08 09:22:26 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 2s. Last read position: chr19:38,801,707
INFO 2026-06-08 09:22:26 MarkDuplicates Tracking 213623 as yet unmatched pairs. 64227 records in RAM.
INFO 2026-06-08 09:22:28 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr19:39,407,999
INFO 2026-06-08 09:22:28 MarkDuplicates Tracking 205297 as yet unmatched pairs. 55901 records in RAM.
INFO 2026-06-08 09:22:29 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr19:39,876,676
INFO 2026-06-08 09:22:29 MarkDuplicates Tracking 201966 as yet unmatched pairs. 52570 records in RAM.
INFO 2026-06-08 09:22:30 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr19:39,886,294
INFO 2026-06-08 09:22:30 MarkDuplicates Tracking 207792 as yet unmatched pairs. 58396 records in RAM.
INFO 2026-06-08 09:22:32 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr19:39,894,039
INFO 2026-06-08 09:22:32 MarkDuplicates Tracking 202374 as yet unmatched pairs. 52978 records in RAM.
INFO 2026-06-08 09:22:33 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr19:39,918,301
INFO 2026-06-08 09:22:33 MarkDuplicates Tracking 196927 as yet unmatched pairs. 47531 records in RAM.
INFO 2026-06-08 09:22:35 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr19:40,609,525
INFO 2026-06-08 09:22:35 MarkDuplicates Tracking 191212 as yet unmatched pairs. 41816 records in RAM.
INFO 2026-06-08 09:22:36 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr19:41,708,716
INFO 2026-06-08 09:22:36 MarkDuplicates Tracking 190935 as yet unmatched pairs. 41537 records in RAM.
INFO 2026-06-08 09:22:38 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr19:41,720,030
INFO 2026-06-08 09:22:38 MarkDuplicates Tracking 190509 as yet unmatched pairs. 41111 records in RAM.
INFO 2026-06-08 09:22:39 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr19:42,287,408
INFO 2026-06-08 09:22:39 MarkDuplicates Tracking 182771 as yet unmatched pairs. 33371 records in RAM.
INFO 2026-06-08 09:22:41 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr19:44,661,310
INFO 2026-06-08 09:22:41 MarkDuplicates Tracking 179436 as yet unmatched pairs. 30031 records in RAM.
INFO 2026-06-08 09:22:42 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr19:45,815,576
INFO 2026-06-08 09:22:42 MarkDuplicates Tracking 175785 as yet unmatched pairs. 26366 records in RAM.
INFO 2026-06-08 09:22:44 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 2s. Last read position: chr19:47,754,729
INFO 2026-06-08 09:22:44 MarkDuplicates Tracking 172503 as yet unmatched pairs. 23084 records in RAM.
INFO 2026-06-08 09:22:46 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr19:48,992,926
INFO 2026-06-08 09:22:46 MarkDuplicates Tracking 169289 as yet unmatched pairs. 19870 records in RAM.
INFO 2026-06-08 09:22:47 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr19:49,646,754
INFO 2026-06-08 09:22:47 MarkDuplicates Tracking 166308 as yet unmatched pairs. 16887 records in RAM.
INFO 2026-06-08 09:22:50 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 2s. Last read position: chr19:50,286,585
INFO 2026-06-08 09:22:50 MarkDuplicates Tracking 163072 as yet unmatched pairs. 13648 records in RAM.
INFO 2026-06-08 09:22:51 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr19:53,068,676
INFO 2026-06-08 09:22:51 MarkDuplicates Tracking 159322 as yet unmatched pairs. 9898 records in RAM.
INFO 2026-06-08 09:22:53 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr19:54,636,781
INFO 2026-06-08 09:22:53 MarkDuplicates Tracking 156108 as yet unmatched pairs. 6684 records in RAM.
INFO 2026-06-08 09:22:54 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr19:55,694,758
INFO 2026-06-08 09:22:54 MarkDuplicates Tracking 153422 as yet unmatched pairs. 3998 records in RAM.
INFO 2026-06-08 09:22:57 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 2s. Last read position: chr19:58,550,151
INFO 2026-06-08 09:22:57 MarkDuplicates Tracking 150109 as yet unmatched pairs. 678 records in RAM.
INFO 2026-06-08 09:23:00 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 2s. Last read position: chr20:3,315,041
INFO 2026-06-08 09:23:00 MarkDuplicates Tracking 146736 as yet unmatched pairs. 35898 records in RAM.
INFO 2026-06-08 09:23:01 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr20:11,918,369
INFO 2026-06-08 09:23:01 MarkDuplicates Tracking 143898 as yet unmatched pairs. 33058 records in RAM.
INFO 2026-06-08 09:23:03 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr20:18,315,537
INFO 2026-06-08 09:23:03 MarkDuplicates Tracking 140949 as yet unmatched pairs. 30109 records in RAM.
INFO 2026-06-08 09:23:04 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr20:25,278,393
INFO 2026-06-08 09:23:04 MarkDuplicates Tracking 139599 as yet unmatched pairs. 28755 records in RAM.
INFO 2026-06-08 09:23:06 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr20:34,105,496
INFO 2026-06-08 09:23:06 MarkDuplicates Tracking 134845 as yet unmatched pairs. 24001 records in RAM.
INFO 2026-06-08 09:23:07 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr20:35,704,709
INFO 2026-06-08 09:23:07 MarkDuplicates Tracking 132334 as yet unmatched pairs. 21488 records in RAM.
INFO 2026-06-08 09:23:09 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr20:38,567,163
INFO 2026-06-08 09:23:09 MarkDuplicates Tracking 128903 as yet unmatched pairs. 18056 records in RAM.
INFO 2026-06-08 09:23:11 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr20:45,327,293
INFO 2026-06-08 09:23:11 MarkDuplicates Tracking 128328 as yet unmatched pairs. 17479 records in RAM.
INFO 2026-06-08 09:23:12 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr20:47,690,142
INFO 2026-06-08 09:23:12 MarkDuplicates Tracking 123085 as yet unmatched pairs. 12235 records in RAM.
INFO 2026-06-08 09:23:14 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr20:51,725,918
INFO 2026-06-08 09:23:14 MarkDuplicates Tracking 120577 as yet unmatched pairs. 9723 records in RAM.
INFO 2026-06-08 09:23:15 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr20:59,324,435
INFO 2026-06-08 09:23:15 MarkDuplicates Tracking 116795 as yet unmatched pairs. 5939 records in RAM.
INFO 2026-06-08 09:23:17 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr20:63,287,806
INFO 2026-06-08 09:23:17 MarkDuplicates Tracking 113352 as yet unmatched pairs. 2490 records in RAM.
INFO 2026-06-08 09:23:18 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr21:8,214,527
INFO 2026-06-08 09:23:18 MarkDuplicates Tracking 110356 as yet unmatched pairs. 21946 records in RAM.
INFO 2026-06-08 09:23:20 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr21:8,443,288
INFO 2026-06-08 09:23:20 MarkDuplicates Tracking 109060 as yet unmatched pairs. 20645 records in RAM.
INFO 2026-06-08 09:23:22 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 2s. Last read position: chr21:26,842,359
INFO 2026-06-08 09:23:22 MarkDuplicates Tracking 106528 as yet unmatched pairs. 18112 records in RAM.
INFO 2026-06-08 09:23:24 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 2s. Last read position: chr21:33,552,477
INFO 2026-06-08 09:23:24 MarkDuplicates Tracking 106284 as yet unmatched pairs. 17867 records in RAM.
INFO 2026-06-08 09:23:26 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr21:37,240,594
INFO 2026-06-08 09:23:26 MarkDuplicates Tracking 100479 as yet unmatched pairs. 12059 records in RAM.
INFO 2026-06-08 09:23:27 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr21:41,494,388
INFO 2026-06-08 09:23:27 MarkDuplicates Tracking 97996 as yet unmatched pairs. 9572 records in RAM.
INFO 2026-06-08 09:23:29 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr21:44,063,551
INFO 2026-06-08 09:23:29 MarkDuplicates Tracking 94262 as yet unmatched pairs. 5837 records in RAM.
INFO 2026-06-08 09:23:30 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr21:46,003,779
INFO 2026-06-08 09:23:30 MarkDuplicates Tracking 91202 as yet unmatched pairs. 2777 records in RAM.
INFO 2026-06-08 09:23:32 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 2s. Last read position: chr22:18,538,503
INFO 2026-06-08 09:23:32 MarkDuplicates Tracking 87506 as yet unmatched pairs. 41317 records in RAM.
INFO 2026-06-08 09:23:34 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr22:21,610,857
INFO 2026-06-08 09:23:34 MarkDuplicates Tracking 84804 as yet unmatched pairs. 38614 records in RAM.
INFO 2026-06-08 09:23:35 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr22:23,767,573
INFO 2026-06-08 09:23:35 MarkDuplicates Tracking 81019 as yet unmatched pairs. 34829 records in RAM.
INFO 2026-06-08 09:23:37 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr22:26,536,339
INFO 2026-06-08 09:23:37 MarkDuplicates Tracking 78118 as yet unmatched pairs. 31928 records in RAM.
INFO 2026-06-08 09:23:39 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr22:29,292,486
INFO 2026-06-08 09:23:39 MarkDuplicates Tracking 80683 as yet unmatched pairs. 34492 records in RAM.
INFO 2026-06-08 09:23:40 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr22:31,090,825
INFO 2026-06-08 09:23:40 MarkDuplicates Tracking 72118 as yet unmatched pairs. 25927 records in RAM.
INFO 2026-06-08 09:23:42 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr22:36,284,113
INFO 2026-06-08 09:23:42 MarkDuplicates Tracking 69419 as yet unmatched pairs. 23224 records in RAM.
INFO 2026-06-08 09:23:43 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr22:37,226,714
INFO 2026-06-08 09:23:43 MarkDuplicates Tracking 65698 as yet unmatched pairs. 19503 records in RAM.
INFO 2026-06-08 09:23:45 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr22:38,294,410
INFO 2026-06-08 09:23:45 MarkDuplicates Tracking 62797 as yet unmatched pairs. 16602 records in RAM.
INFO 2026-06-08 09:23:48 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 2s. Last read position: chr22:40,404,425
INFO 2026-06-08 09:23:48 MarkDuplicates Tracking 59887 as yet unmatched pairs. 13692 records in RAM.
INFO 2026-06-08 09:23:50 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr22:41,867,152
INFO 2026-06-08 09:23:50 MarkDuplicates Tracking 57278 as yet unmatched pairs. 11082 records in RAM.
INFO 2026-06-08 09:23:51 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chr22:44,862,456
INFO 2026-06-08 09:23:51 MarkDuplicates Tracking 53862 as yet unmatched pairs. 7666 records in RAM.
INFO 2026-06-08 09:23:53 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chr22:50,276,657
INFO 2026-06-08 09:23:53 MarkDuplicates Tracking 51296 as yet unmatched pairs. 5100 records in RAM.
INFO 2026-06-08 09:23:55 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chrX:284,183
INFO 2026-06-08 09:23:55 MarkDuplicates Tracking 46283 as yet unmatched pairs. 41921 records in RAM.
INFO 2026-06-08 09:23:56 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chrX:12,976,800
INFO 2026-06-08 09:23:56 MarkDuplicates Tracking 46271 as yet unmatched pairs. 41908 records in RAM.
INFO 2026-06-08 09:23:58 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chrX:24,055,655
INFO 2026-06-08 09:23:58 MarkDuplicates Tracking 43104 as yet unmatched pairs. 38738 records in RAM.
INFO 2026-06-08 09:23:59 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chrX:41,144,526
INFO 2026-06-08 09:23:59 MarkDuplicates Tracking 37986 as yet unmatched pairs. 33620 records in RAM.
INFO 2026-06-08 09:24:01 MarkDuplicates Read 641,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chrX:47,201,578
INFO 2026-06-08 09:24:01 MarkDuplicates Tracking 35220 as yet unmatched pairs. 30854 records in RAM.
INFO 2026-06-08 09:24:02 MarkDuplicates Read 642,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chrX:49,033,464
INFO 2026-06-08 09:24:02 MarkDuplicates Tracking 31681 as yet unmatched pairs. 27314 records in RAM.
INFO 2026-06-08 09:24:04 MarkDuplicates Read 643,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chrX:53,548,972
INFO 2026-06-08 09:24:04 MarkDuplicates Tracking 28917 as yet unmatched pairs. 24550 records in RAM.
INFO 2026-06-08 09:24:06 MarkDuplicates Read 644,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chrX:66,200,741
INFO 2026-06-08 09:24:06 MarkDuplicates Tracking 26292 as yet unmatched pairs. 21925 records in RAM.
INFO 2026-06-08 09:24:07 MarkDuplicates Read 645,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chrX:71,536,175
INFO 2026-06-08 09:24:07 MarkDuplicates Tracking 23573 as yet unmatched pairs. 19206 records in RAM.
INFO 2026-06-08 09:24:10 MarkDuplicates Read 646,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 2s. Last read position: chrX:77,697,593
INFO 2026-06-08 09:24:10 MarkDuplicates Tracking 21915 as yet unmatched pairs. 17548 records in RAM.
INFO 2026-06-08 09:24:11 MarkDuplicates Read 647,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chrX:103,082,295
INFO 2026-06-08 09:24:11 MarkDuplicates Tracking 17931 as yet unmatched pairs. 13563 records in RAM.
INFO 2026-06-08 09:24:13 MarkDuplicates Read 648,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chrX:119,590,903
INFO 2026-06-08 09:24:13 MarkDuplicates Tracking 15120 as yet unmatched pairs. 10752 records in RAM.
INFO 2026-06-08 09:24:15 MarkDuplicates Read 649,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chrX:134,807,541
INFO 2026-06-08 09:24:15 MarkDuplicates Tracking 12395 as yet unmatched pairs. 8027 records in RAM.
INFO 2026-06-08 09:24:16 MarkDuplicates Read 650,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chrX:153,950,519
INFO 2026-06-08 09:24:16 MarkDuplicates Tracking 9581 as yet unmatched pairs. 5213 records in RAM.
INFO 2026-06-08 09:24:18 MarkDuplicates Read 651,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chrX:154,403,564
INFO 2026-06-08 09:24:18 MarkDuplicates Tracking 6198 as yet unmatched pairs. 1830 records in RAM.
INFO 2026-06-08 09:24:19 MarkDuplicates Read 652,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: GL000220.1:107,644
INFO 2026-06-08 09:24:19 MarkDuplicates Tracking 3593 as yet unmatched pairs. 1272 records in RAM.
INFO 2026-06-08 09:24:20 MarkDuplicates Read 653,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 0s. Last read position: KI270711.1:20,113
INFO 2026-06-08 09:24:20 MarkDuplicates Tracking 2482 as yet unmatched pairs. 265 records in RAM.
INFO 2026-06-08 09:24:21 MarkDuplicates Read 653856019 records. 0 pairs never matched.
INFO 2026-06-08 09:25:10 MarkDuplicates After buildSortedReadEndLists freeMemory: 204139560; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:25:10 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:25:14 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:25:15 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:25:37 OpticalDuplicateFinder Large duplicate set. size = 1227
INFO 2026-06-08 09:25:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,193
INFO 2026-06-08 09:25:37 OpticalDuplicateFinder Large duplicate set. size = 1068
INFO 2026-06-08 09:25:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,583
INFO 2026-06-08 09:25:41 OpticalDuplicateFinder Large duplicate set. size = 2418
INFO 2026-06-08 09:25:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,198
INFO 2026-06-08 09:25:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,988
INFO 2026-06-08 09:25:41 OpticalDuplicateFinder Large duplicate set. size = 1296
INFO 2026-06-08 09:25:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,800
INFO 2026-06-08 09:25:41 OpticalDuplicateFinder Large duplicate set. size = 1491
INFO 2026-06-08 09:25:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,407
INFO 2026-06-08 09:25:41 OpticalDuplicateFinder Large duplicate set. size = 1040
INFO 2026-06-08 09:25:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,954
INFO 2026-06-08 09:25:42 OpticalDuplicateFinder Large duplicate set. size = 1495
INFO 2026-06-08 09:25:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,037
INFO 2026-06-08 09:25:42 OpticalDuplicateFinder Large duplicate set. size = 1376
INFO 2026-06-08 09:25:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,986
INFO 2026-06-08 09:25:42 OpticalDuplicateFinder Large duplicate set. size = 1145
INFO 2026-06-08 09:25:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,559
INFO 2026-06-08 09:25:44 OpticalDuplicateFinder Large duplicate set. size = 1118
INFO 2026-06-08 09:25:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,782
INFO 2026-06-08 09:25:44 OpticalDuplicateFinder Large duplicate set. size = 1082
INFO 2026-06-08 09:25:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,788
INFO 2026-06-08 09:25:44 OpticalDuplicateFinder Large duplicate set. size = 1222
INFO 2026-06-08 09:25:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,495
INFO 2026-06-08 09:25:44 OpticalDuplicateFinder Large duplicate set. size = 1417
INFO 2026-06-08 09:25:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,965
INFO 2026-06-08 09:25:44 OpticalDuplicateFinder Large duplicate set. size = 1484
INFO 2026-06-08 09:25:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,879
INFO 2026-06-08 09:25:44 OpticalDuplicateFinder Large duplicate set. size = 1041
INFO 2026-06-08 09:25:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,139
INFO 2026-06-08 09:25:45 OpticalDuplicateFinder Large duplicate set. size = 1444
INFO 2026-06-08 09:25:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,318
INFO 2026-06-08 09:25:45 OpticalDuplicateFinder Large duplicate set. size = 1149
INFO 2026-06-08 09:25:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,336
INFO 2026-06-08 09:25:45 OpticalDuplicateFinder Large duplicate set. size = 1267
INFO 2026-06-08 09:25:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,456
INFO 2026-06-08 09:25:45 OpticalDuplicateFinder Large duplicate set. size = 2249
INFO 2026-06-08 09:25:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,245
INFO 2026-06-08 09:25:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,175
INFO 2026-06-08 09:25:46 OpticalDuplicateFinder Large duplicate set. size = 2522
INFO 2026-06-08 09:25:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,634
INFO 2026-06-08 09:25:46 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,084
INFO 2026-06-08 09:25:46 OpticalDuplicateFinder Large duplicate set. size = 1099
INFO 2026-06-08 09:25:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,794
INFO 2026-06-08 09:25:46 OpticalDuplicateFinder Large duplicate set. size = 1177
INFO 2026-06-08 09:25:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,799
INFO 2026-06-08 09:25:46 OpticalDuplicateFinder Large duplicate set. size = 1224
INFO 2026-06-08 09:25:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,018
INFO 2026-06-08 09:25:56 OpticalDuplicateFinder Large duplicate set. size = 1119
INFO 2026-06-08 09:25:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,678
INFO 2026-06-08 09:25:56 OpticalDuplicateFinder Large duplicate set. size = 1382
INFO 2026-06-08 09:25:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,532
INFO 2026-06-08 09:26:16 OpticalDuplicateFinder Large duplicate set. size = 1007
INFO 2026-06-08 09:26:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,870
INFO 2026-06-08 09:26:16 OpticalDuplicateFinder Large duplicate set. size = 1053
INFO 2026-06-08 09:26:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,206
INFO 2026-06-08 09:26:16 OpticalDuplicateFinder Large duplicate set. size = 1044
INFO 2026-06-08 09:26:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,199
INFO 2026-06-08 09:26:44 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:26:44 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:27:50 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:27:52 MarkDuplicates After generateDuplicateIndexes freeMemory: 203951056; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:27:52 MarkDuplicates Marking 313238882 records as duplicates.
INFO 2026-06-08 09:27:52 MarkDuplicates Found 22687537 optical duplicate clusters.
INFO 2026-06-08 09:27:52 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:28:10 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:23,793,710
INFO 2026-06-08 09:28:27 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:34s. Time for last 10,000,000: 17s. Last read position: chr1:47,668,707
INFO 2026-06-08 09:28:43 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:50s. Time for last 10,000,000: 15s. Last read position: chr1:119,799,739
INFO 2026-06-08 09:28:59 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:06s. Time for last 10,000,000: 15s. Last read position: chr1:155,327,053
INFO 2026-06-08 09:29:20 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:27s. Time for last 10,000,000: 21s. Last read position: chr1:200,898,419
INFO 2026-06-08 09:29:36 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:43s. Time for last 10,000,000: 16s. Last read position: chr1:246,726,987
INFO 2026-06-08 09:29:51 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:58s. Time for last 10,000,000: 14s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:30:07 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:14s. Time for last 10,000,000: 15s. Last read position: chr2:79,157,284
INFO 2026-06-08 09:30:22 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:30s. Time for last 10,000,000: 15s. Last read position: chr2:131,492,270
INFO 2026-06-08 09:30:38 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:46s. Time for last 10,000,000: 15s. Last read position: chr2:215,372,000
INFO 2026-06-08 09:30:55 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:02s. Time for last 10,000,000: 16s. Last read position: chr3:9,677,357
INFO 2026-06-08 09:31:11 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:18s. Time for last 10,000,000: 15s. Last read position: chr3:50,610,433
INFO 2026-06-08 09:31:27 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:34s. Time for last 10,000,000: 15s. Last read position: chr3:132,514,583
INFO 2026-06-08 09:31:43 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:50s. Time for last 10,000,000: 15s. Last read position: chr3:195,787,989
INFO 2026-06-08 09:31:59 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:06s. Time for last 10,000,000: 16s. Last read position: chr4:76,169,965
INFO 2026-06-08 09:32:15 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:23s. Time for last 10,000,000: 16s. Last read position: chr4:186,706,594
INFO 2026-06-08 09:32:32 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:39s. Time for last 10,000,000: 16s. Last read position: chr5:96,662,487
INFO 2026-06-08 09:32:48 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:55s. Time for last 10,000,000: 15s. Last read position: chr5:151,799,908
INFO 2026-06-08 09:33:03 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:11s. Time for last 10,000,000: 15s. Last read position: chr6:11,190,284
INFO 2026-06-08 09:33:19 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:26s. Time for last 10,000,000: 15s. Last read position: chr6:34,418,390
INFO 2026-06-08 09:33:35 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:42s. Time for last 10,000,000: 16s. Last read position: chr6:117,602,090
INFO 2026-06-08 09:33:51 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:58s. Time for last 10,000,000: 15s. Last read position: chr7:5,528,323
INFO 2026-06-08 09:34:08 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:15s. Time for last 10,000,000: 16s. Last read position: chr7:75,192,944
INFO 2026-06-08 09:34:23 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:31s. Time for last 10,000,000: 15s. Last read position: chr7:100,993,700
INFO 2026-06-08 09:34:38 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:46s. Time for last 10,000,000: 15s. Last read position: chr7:100,997,954
INFO 2026-06-08 09:34:54 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:01s. Time for last 10,000,000: 15s. Last read position: chr7:101,001,561
INFO 2026-06-08 09:35:09 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:17s. Time for last 10,000,000: 15s. Last read position: chr7:116,769,782
INFO 2026-06-08 09:35:25 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:32s. Time for last 10,000,000: 15s. Last read position: chr8:22,025,759
INFO 2026-06-08 09:35:41 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:48s. Time for last 10,000,000: 15s. Last read position: chr8:100,705,629
INFO 2026-06-08 09:35:57 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:04s. Time for last 10,000,000: 15s. Last read position: chr8:144,317,996
INFO 2026-06-08 09:36:13 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:20s. Time for last 10,000,000: 16s. Last read position: chr9:98,133,119
INFO 2026-06-08 09:36:30 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:38s. Time for last 10,000,000: 17s. Last read position: chr9:136,224,015
INFO 2026-06-08 09:36:46 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:54s. Time for last 10,000,000: 16s. Last read position: chr10:61,940,273
INFO 2026-06-08 09:37:02 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:10s. Time for last 10,000,000: 16s. Last read position: chr10:114,487,958
INFO 2026-06-08 09:37:18 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:26s. Time for last 10,000,000: 15s. Last read position: chr11:1,182,674
INFO 2026-06-08 09:37:36 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:44s. Time for last 10,000,000: 17s. Last read position: chr11:1,244,654
INFO 2026-06-08 09:37:51 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:59s. Time for last 10,000,000: 14s. Last read position: chr11:10,797,832
INFO 2026-06-08 09:38:08 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:15s. Time for last 10,000,000: 16s. Last read position: chr11:62,527,491
INFO 2026-06-08 09:38:24 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:31s. Time for last 10,000,000: 16s. Last read position: chr11:75,400,700
INFO 2026-06-08 09:38:40 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:47s. Time for last 10,000,000: 16s. Last read position: chr12:6,018,420
INFO 2026-06-08 09:38:57 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:04s. Time for last 10,000,000: 16s. Last read position: chr12:52,898,681
INFO 2026-06-08 09:39:13 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:21s. Time for last 10,000,000: 16s. Last read position: chr12:76,030,548
INFO 2026-06-08 09:39:29 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:37s. Time for last 10,000,000: 15s. Last read position: chr12:131,766,259
INFO 2026-06-08 09:39:46 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:53s. Time for last 10,000,000: 16s. Last read position: chr13:112,823,387
INFO 2026-06-08 09:40:02 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:09s. Time for last 10,000,000: 16s. Last read position: chr14:70,732,595
INFO 2026-06-08 09:40:18 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:25s. Time for last 10,000,000: 15s. Last read position: chr14:105,707,414
INFO 2026-06-08 09:40:34 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:41s. Time for last 10,000,000: 16s. Last read position: chr15:55,185,383
INFO 2026-06-08 09:40:50 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:58s. Time for last 10,000,000: 16s. Last read position: chr15:90,875,725
INFO 2026-06-08 09:41:07 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:14s. Time for last 10,000,000: 16s. Last read position: chr16:18,379,702
INFO 2026-06-08 09:41:24 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:31s. Time for last 10,000,000: 16s. Last read position: chr16:30,768,887