File Info

Filename
aih-tih-sc-176637-R1_B23WHYVLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/1fffb548fa4e10c9ec207fcbade05d/aih-tih-sc-176637-R1_B23WHYVLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:33:03
                             Started mapping on |	Jun 08 07:35:04
                                    Finished on |	Jun 08 08:12:14
       Mapping speed, Million of reads per hour |	306.18

                          Number of input reads |	189659281
                      Average input read length |	258
                                    UNIQUE READS:
                   Uniquely mapped reads number |	181338691
                        Uniquely mapped reads % |	95.61%
                          Average mapped length |	257.58
                       Number of splices: Total |	219054546
            Number of splices: Annotated (sjdb) |	215958014
                       Number of splices: GT/AG |	216839600
                       Number of splices: GC/AG |	1609108
                       Number of splices: AT/AC |	165951
               Number of splices: Non-canonical |	439887
                      Mismatch rate per base, % |	0.16%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.11
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.52
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	4462289
             % of reads mapped to multiple loci |	2.35%
        Number of reads mapped to too many loci |	221029
             % of reads mapped to too many loci |	0.12%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	331026
       % of reads unmapped: too many mismatches |	0.17%
            Number of reads unmapped: too short |	2080435
                 % of reads unmapped: too short |	1.10%
                Number of reads unmapped: other |	200286
                     % of reads unmapped: other |	0.11%
                                  CHIMERIC READS:
                       Number of chimeric reads |	2602108
                            % of chimeric reads |	1.37%