File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/1c4d58c8aa997ed22412c214f8accb/.command.log
Size
5.7 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-505123-R1_B23WHYVLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/3c417c494dd3f5113413e0ff52d311/aih-tih-sc-505123-R1_B23WHYVLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-8900cb43-4dca-49ac-a290-1d176a2e0012/bb/b9dd0d6df869a3d0edd9f161adc899/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/1c4d58c8aa997ed22412c214f8accb/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/1c4d58c8aa997ed22412c214f8accb/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/12fa6aceb16e0254d591b7b4cfc3fd/aih-tih-sc-505123-R1_B23WHYVLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...

  0%|          | 0/24 [00:00<?, ?it/s]TLK2P1--AC110079.1
starfusion
PTPN20--BMS1P7
starfusion
arriba
TLK2--AC240565.1
starfusion
RASA4--POLR2J2
starfusion
USH2A--USH2A
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGA12
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHA13
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHA13
arriba
PCDHA3--PCDHA13
arriba
PCDHA3--PCDHAC1
arriba
PCDHA3--PCDHAC2
arriba

Processing TLK2P1--AC110079.1:   0%|          | 0/24 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1:   4%|▍         | 1/24 [00:00<00:02,  9.15it/s]
Processing PTPN20--BMS1P7:   4%|▍         | 1/24 [00:00<00:02,  9.15it/s]    
Processing PTPN20--BMS1P7:   8%|▊         | 2/24 [00:00<00:02,  9.36it/s]
Processing TLK2--AC240565.1:   8%|▊         | 2/24 [00:00<00:02,  9.36it/s]
Processing TLK2--AC240565.1:  12%|█▎        | 3/24 [00:00<00:02,  9.43it/s]
Processing RASA4--POLR2J2:  12%|█▎        | 3/24 [00:00<00:02,  9.43it/s]  
Processing RASA4--POLR2J2:  17%|█▋        | 4/24 [00:00<00:02,  9.47it/s]
Processing USH2A--USH2A:  17%|█▋        | 4/24 [00:00<00:02,  9.47it/s]  
Processing USH2A--USH2A:  21%|██        | 5/24 [00:00<00:02,  9.48it/s]
Processing PCDHGB2--PCDHGC3:  21%|██        | 5/24 [00:00<00:02,  9.48it/s]
Processing PCDHGB2--PCDHGC3:  25%|██▌       | 6/24 [00:00<00:01,  9.46it/s]
Processing PCDHGB2--PCDHGC5:  25%|██▌       | 6/24 [00:00<00:01,  9.46it/s]
Processing PCDHGB2--PCDHGC5:  29%|██▉       | 7/24 [00:00<00:01,  9.48it/s]
Processing PCDHGB2--PCDHGC4:  29%|██▉       | 7/24 [00:00<00:01,  9.48it/s]
Processing PCDHGB2--PCDHGC4:  33%|███▎      | 8/24 [00:00<00:01,  9.49it/s]
Processing PCDHGB2--PCDHGA8:  33%|███▎      | 8/24 [00:00<00:01,  9.49it/s]
Processing PCDHGB2--PCDHGA8:  38%|███▊      | 9/24 [00:00<00:01,  9.49it/s]
Processing PCDHGB2--PCDHGB6:  38%|███▊      | 9/24 [00:00<00:01,  9.49it/s]
Processing PCDHGB2--PCDHGB6:  42%|████▏     | 10/24 [00:01<00:01,  9.49it/s]
Processing PCDHGB2--PCDHGA10:  42%|████▏     | 10/24 [00:01<00:01,  9.49it/s]
Processing PCDHGB2--PCDHGA10:  46%|████▌     | 11/24 [00:01<00:01,  9.50it/s]
Processing PCDHGB2--PCDHGB7:  46%|████▌     | 11/24 [00:01<00:01,  9.50it/s] 
Processing PCDHGB2--PCDHGB7:  50%|█████     | 12/24 [00:01<00:01,  9.50it/s]
Processing PCDHGB2--PCDHGA11:  50%|█████     | 12/24 [00:01<00:01,  9.50it/s]
Processing PCDHGB2--PCDHGA11:  54%|█████▍    | 13/24 [00:01<00:01,  9.50it/s]
Processing PCDHGB2--PCDHGA9:  54%|█████▍    | 13/24 [00:01<00:01,  9.50it/s] 
Processing PCDHGB2--PCDHGA9:  58%|█████▊    | 14/24 [00:01<00:01,  9.51it/s]
Processing PCDHGB2--PCDHGA12:  58%|█████▊    | 14/24 [00:01<00:01,  9.51it/s]
Processing PCDHGB2--PCDHGA12:  62%|██████▎   | 15/24 [00:01<00:00,  9.51it/s]
Processing PCDHA4--PCDHAC2:  62%|██████▎   | 15/24 [00:01<00:00,  9.51it/s]  
Processing PCDHA4--PCDHAC2:  67%|██████▋   | 16/24 [00:01<00:00,  9.51it/s]
Processing PCDHA4--PCDHAC1:  67%|██████▋   | 16/24 [00:01<00:00,  9.51it/s]
Processing PCDHA4--PCDHAC1:  71%|███████   | 17/24 [00:01<00:00,  9.51it/s]
Processing PCDHA4--PCDHA13:  71%|███████   | 17/24 [00:01<00:00,  9.51it/s]
Processing PCDHA4--PCDHA13:  75%|███████▌  | 18/24 [00:01<00:00,  9.50it/s]
Processing PCDHA6--PCDHAC2:  75%|███████▌  | 18/24 [00:01<00:00,  9.50it/s]
Processing PCDHA6--PCDHAC2:  79%|███████▉  | 19/24 [00:02<00:00,  9.51it/s]
Processing PCDHA6--PCDHAC1:  79%|███████▉  | 19/24 [00:02<00:00,  9.51it/s]
Processing PCDHA6--PCDHAC1:  83%|████████▎ | 20/24 [00:02<00:00,  9.51it/s]
Processing PCDHA6--PCDHA13:  83%|████████▎ | 20/24 [00:02<00:00,  9.51it/s]
Processing PCDHA6--PCDHA13:  88%|████████▊ | 21/24 [00:02<00:00,  9.51it/s]
Processing PCDHA3--PCDHA13:  88%|████████▊ | 21/24 [00:02<00:00,  9.51it/s]
Processing PCDHA3--PCDHA13:  92%|█████████▏| 22/24 [00:02<00:00,  9.51it/s]
Processing PCDHA3--PCDHAC1:  92%|█████████▏| 22/24 [00:02<00:00,  9.51it/s]
Processing PCDHA3--PCDHAC1:  96%|█████████▌| 23/24 [00:02<00:00,  9.52it/s]
Processing PCDHA3--PCDHAC2:  96%|█████████▌| 23/24 [00:02<00:00,  9.52it/s]
Processing PCDHA3--PCDHAC2: 100%|██████████| 24/24 [00:02<00:00,  9.53it/s]
Processing PCDHA3--PCDHAC2: 100%|██████████| 24/24 [00:02<00:00,  9.49it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory