Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/21b353089231fd5e0e57ee3ca92d22/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/21b353089231fd5e0e57ee3ca92d22/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/9c5736f9c8abfd82971a210e994225/aih-tih-sc-1d89ab-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-1d89ab-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-1d89ab-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-1d89ab-R1_B23WHYVLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:50:13.316 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:50:13 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-1d89ab-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-1d89ab-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-1d89ab-R1_B23WHYVLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:50:13 GMT 2026] Executing as ?@nf-6821b353089231fd5e0e57ee3ca92d22-483a5-nvcmf on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:50:13 MarkDuplicates Start of doWork freeMemory: 105828024; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:50:13 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:50:13 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,228,635
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 3442 as yet unmatched pairs. 375 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:1,543,916
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 6982 as yet unmatched pairs. 487 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:3,514,589
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 10013 as yet unmatched pairs. 491 records in RAM.
INFO 2026-06-08 08:50:23 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:8,360,616
INFO 2026-06-08 08:50:23 MarkDuplicates Tracking 12904 as yet unmatched pairs. 230 records in RAM.
INFO 2026-06-08 08:50:25 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:11,016,925
INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 15913 as yet unmatched pairs. 330 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:13,781,515
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 18702 as yet unmatched pairs. 260 records in RAM.
INFO 2026-06-08 08:50:29 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 2s. Last read position: chr1:16,969,161
INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 21196 as yet unmatched pairs. 220 records in RAM.
INFO 2026-06-08 08:50:31 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:19,683,205
INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 24221 as yet unmatched pairs. 120 records in RAM.
INFO 2026-06-08 08:50:32 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:21,872,234
INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 27372 as yet unmatched pairs. 302 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:22,660,900
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 31202 as yet unmatched pairs. 1128 records in RAM.
INFO 2026-06-08 08:50:36 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 2s. Last read position: chr1:25,246,770
INFO 2026-06-08 08:50:36 MarkDuplicates Tracking 33621 as yet unmatched pairs. 670 records in RAM.
INFO 2026-06-08 08:50:38 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:27,361,783
INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 35988 as yet unmatched pairs. 180 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:30,964,814
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 39173 as yet unmatched pairs. 435 records in RAM.
INFO 2026-06-08 08:50:41 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:32,826,129
INFO 2026-06-08 08:50:41 MarkDuplicates Tracking 41897 as yet unmatched pairs. 326 records in RAM.
INFO 2026-06-08 08:50:42 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:36,289,297
INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 44802 as yet unmatched pairs. 234 records in RAM.
INFO 2026-06-08 08:50:44 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:39,385,439
INFO 2026-06-08 08:50:44 MarkDuplicates Tracking 48358 as yet unmatched pairs. 957 records in RAM.
INFO 2026-06-08 08:50:46 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:41,381,832
INFO 2026-06-08 08:50:46 MarkDuplicates Tracking 50309 as yet unmatched pairs. 189 records in RAM.
INFO 2026-06-08 08:50:47 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:43,591,881
INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 53544 as yet unmatched pairs. 266 records in RAM.
INFO 2026-06-08 08:50:49 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:45,511,359
INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 57987 as yet unmatched pairs. 1513 records in RAM.
INFO 2026-06-08 08:50:50 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:51,290,514
INFO 2026-06-08 08:50:50 MarkDuplicates Tracking 59348 as yet unmatched pairs. 142 records in RAM.
INFO 2026-06-08 08:50:52 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:54,852,270
INFO 2026-06-08 08:50:52 MarkDuplicates Tracking 62228 as yet unmatched pairs. 330 records in RAM.
INFO 2026-06-08 08:50:54 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 2s. Last read position: chr1:67,687,663
INFO 2026-06-08 08:50:54 MarkDuplicates Tracking 64592 as yet unmatched pairs. 94 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:88,805,576
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 67173 as yet unmatched pairs. 163 records in RAM.
INFO 2026-06-08 08:50:57 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:94,530,407
INFO 2026-06-08 08:50:57 MarkDuplicates Tracking 69506 as yet unmatched pairs. 110 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:108,445,357
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 72093 as yet unmatched pairs. 57 records in RAM.
INFO 2026-06-08 08:51:00 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:111,459,552
INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 75501 as yet unmatched pairs. 554 records in RAM.
INFO 2026-06-08 08:51:01 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:113,941,342
INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 78110 as yet unmatched pairs. 539 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:116,984,737
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 80472 as yet unmatched pairs. 290 records in RAM.
INFO 2026-06-08 08:51:04 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:119,925,691
INFO 2026-06-08 08:51:04 MarkDuplicates Tracking 84099 as yet unmatched pairs. 1108 records in RAM.
INFO 2026-06-08 08:51:06 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:120,494,385
INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 85389 as yet unmatched pairs. 127 records in RAM.
INFO 2026-06-08 08:51:08 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:144,892,362
INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 86730 as yet unmatched pairs. 180 records in RAM.
INFO 2026-06-08 08:51:10 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:146,126,285
INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 88364 as yet unmatched pairs. 438 records in RAM.
INFO 2026-06-08 08:51:11 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:147,620,570
INFO 2026-06-08 08:51:11 MarkDuplicates Tracking 89341 as yet unmatched pairs. 187 records in RAM.
INFO 2026-06-08 08:51:13 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:148,577,232
INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 90295 as yet unmatched pairs. 399 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:149,430,933
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 92525 as yet unmatched pairs. 1344 records in RAM.
INFO 2026-06-08 08:51:15 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:149,842,548
INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 93181 as yet unmatched pairs. 733 records in RAM.
INFO 2026-06-08 08:51:17 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:150,557,893
INFO 2026-06-08 08:51:17 MarkDuplicates Tracking 95038 as yet unmatched pairs. 207 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:151,243,810
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 97655 as yet unmatched pairs. 124 records in RAM.
INFO 2026-06-08 08:51:20 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:151,986,112
INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 101105 as yet unmatched pairs. 718 records in RAM.
INFO 2026-06-08 08:51:22 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:153,968,615
INFO 2026-06-08 08:51:22 MarkDuplicates Tracking 103258 as yet unmatched pairs. 338 records in RAM.
INFO 2026-06-08 08:51:24 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:154,213,914
INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 106145 as yet unmatched pairs. 544 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:154,958,905
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 108714 as yet unmatched pairs. 250 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 4s. Last read position: chr1:155,136,317
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 112468 as yet unmatched pairs. 818 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 2s. Last read position: chr1:155,479,263
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 115045 as yet unmatched pairs. 853 records in RAM.
INFO 2026-06-08 08:51:34 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:155,926,728
INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 116644 as yet unmatched pairs. 154 records in RAM.
INFO 2026-06-08 08:51:35 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:156,136,228
INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 120727 as yet unmatched pairs. 371 records in RAM.
INFO 2026-06-08 08:51:37 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:156,539,897
INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 123978 as yet unmatched pairs. 517 records in RAM.
INFO 2026-06-08 08:51:39 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 2s. Last read position: chr1:159,052,080
INFO 2026-06-08 08:51:39 MarkDuplicates Tracking 126181 as yet unmatched pairs. 121 records in RAM.
INFO 2026-06-08 08:51:41 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:160,751,343
INFO 2026-06-08 08:51:41 MarkDuplicates Tracking 129117 as yet unmatched pairs. 234 records in RAM.
INFO 2026-06-08 08:51:42 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:161,542,496
INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 133519 as yet unmatched pairs. 1983 records in RAM.
INFO 2026-06-08 08:51:44 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:166,276,425
INFO 2026-06-08 08:51:44 MarkDuplicates Tracking 133941 as yet unmatched pairs. 54 records in RAM.
INFO 2026-06-08 08:51:47 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 2s. Last read position: chr1:169,978,120
INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 136932 as yet unmatched pairs. 169 records in RAM.
INFO 2026-06-08 08:51:48 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:173,961,116
INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 139372 as yet unmatched pairs. 139 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:182,878,109
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 141919 as yet unmatched pairs. 135 records in RAM.
INFO 2026-06-08 08:51:53 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 2s. Last read position: chr1:186,341,037
INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 144926 as yet unmatched pairs. 667 records in RAM.
INFO 2026-06-08 08:51:54 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:200,650,421
INFO 2026-06-08 08:51:54 MarkDuplicates Tracking 146508 as yet unmatched pairs. 123 records in RAM.
INFO 2026-06-08 08:51:56 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:203,305,545
INFO 2026-06-08 08:51:56 MarkDuplicates Tracking 149716 as yet unmatched pairs. 486 records in RAM.
INFO 2026-06-08 08:51:57 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:204,618,703
INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 151991 as yet unmatched pairs. 91 records in RAM.
INFO 2026-06-08 08:51:59 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:209,789,712
INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 154571 as yet unmatched pairs. 89 records in RAM.
INFO 2026-06-08 08:52:01 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:222,563,272
INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 157179 as yet unmatched pairs. 66 records in RAM.
INFO 2026-06-08 08:52:03 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 2s. Last read position: chr1:225,831,885
INFO 2026-06-08 08:52:03 MarkDuplicates Tracking 160514 as yet unmatched pairs. 741 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr1:228,394,786
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 162821 as yet unmatched pairs. 198 records in RAM.
INFO 2026-06-08 08:52:06 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:236,045,479
INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 165741 as yet unmatched pairs. 86 records in RAM.
INFO 2026-06-08 08:52:07 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr1:247,159,023
INFO 2026-06-08 08:52:07 MarkDuplicates Tracking 168554 as yet unmatched pairs. 171 records in RAM.
INFO 2026-06-08 08:52:11 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 3s. Last read position: chr2:10,663,036
INFO 2026-06-08 08:52:11 MarkDuplicates Tracking 171501 as yet unmatched pairs. 170900 records in RAM.
INFO 2026-06-08 08:52:13 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 2s. Last read position: chr2:20,204,054
INFO 2026-06-08 08:52:13 MarkDuplicates Tracking 177210 as yet unmatched pairs. 176605 records in RAM.
INFO 2026-06-08 08:52:16 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 3s. Last read position: chr2:26,186,198
INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 176696 as yet unmatched pairs. 176091 records in RAM.
INFO 2026-06-08 08:52:18 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:28,404,106
INFO 2026-06-08 08:52:18 MarkDuplicates Tracking 179531 as yet unmatched pairs. 178916 records in RAM.
INFO 2026-06-08 08:52:20 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,253
INFO 2026-06-08 08:52:20 MarkDuplicates Tracking 233899 as yet unmatched pairs. 178420 records in RAM.
INFO 2026-06-08 08:52:21 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:52:21 MarkDuplicates Tracking 300026 as yet unmatched pairs. 175261 records in RAM.
INFO 2026-06-08 08:52:23 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:52:23 MarkDuplicates Tracking 950058 as yet unmatched pairs. 143880 records in RAM.
INFO 2026-06-08 08:52:26 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,403
INFO 2026-06-08 08:52:26 MarkDuplicates Tracking 1422843 as yet unmatched pairs. 121366 records in RAM.
INFO 2026-06-08 08:52:28 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 1437767 as yet unmatched pairs. 120803 records in RAM.
INFO 2026-06-08 08:52:30 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,469
INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 1541405 as yet unmatched pairs. 116059 records in RAM.
INFO 2026-06-08 08:52:32 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:42,261,122
INFO 2026-06-08 08:52:32 MarkDuplicates Tracking 1541251 as yet unmatched pairs. 115114 records in RAM.
INFO 2026-06-08 08:52:33 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:45,602,039
INFO 2026-06-08 08:52:33 MarkDuplicates Tracking 1536799 as yet unmatched pairs. 110660 records in RAM.
INFO 2026-06-08 08:52:35 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:54,987,574
INFO 2026-06-08 08:52:35 MarkDuplicates Tracking 1534763 as yet unmatched pairs. 108606 records in RAM.
INFO 2026-06-08 08:52:37 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:61,488,644
INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 1532554 as yet unmatched pairs. 106374 records in RAM.
INFO 2026-06-08 08:52:39 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:69,326,190
INFO 2026-06-08 08:52:39 MarkDuplicates Tracking 1529596 as yet unmatched pairs. 103412 records in RAM.
INFO 2026-06-08 08:52:41 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:73,453,318
INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 1526770 as yet unmatched pairs. 100576 records in RAM.
INFO 2026-06-08 08:52:44 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 2s. Last read position: chr2:85,049,454
INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 1523625 as yet unmatched pairs. 97428 records in RAM.
INFO 2026-06-08 08:52:45 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:86,974,393
INFO 2026-06-08 08:52:45 MarkDuplicates Tracking 1520941 as yet unmatched pairs. 94737 records in RAM.
INFO 2026-06-08 08:52:47 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:88,857,501
INFO 2026-06-08 08:52:47 MarkDuplicates Tracking 1528710 as yet unmatched pairs. 102481 records in RAM.
INFO 2026-06-08 08:52:48 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:96,861,187
INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 1517099 as yet unmatched pairs. 90844 records in RAM.
INFO 2026-06-08 08:52:50 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:101,859,014
INFO 2026-06-08 08:52:50 MarkDuplicates Tracking 1514872 as yet unmatched pairs. 88609 records in RAM.
INFO 2026-06-08 08:52:52 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:108,753,954
INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 1514620 as yet unmatched pairs. 88350 records in RAM.
INFO 2026-06-08 08:52:54 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 2s. Last read position: chr2:109,585,757
INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 1511379 as yet unmatched pairs. 85106 records in RAM.
INFO 2026-06-08 08:52:56 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:110,543,595
INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 1511008 as yet unmatched pairs. 84734 records in RAM.
INFO 2026-06-08 08:52:57 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:112,775,108
INFO 2026-06-08 08:52:57 MarkDuplicates Tracking 1508897 as yet unmatched pairs. 82617 records in RAM.
INFO 2026-06-08 08:52:58 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:127,639,368
INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 1506486 as yet unmatched pairs. 80195 records in RAM.
INFO 2026-06-08 08:53:00 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:135,755,602
INFO 2026-06-08 08:53:00 MarkDuplicates Tracking 1503907 as yet unmatched pairs. 77587 records in RAM.
INFO 2026-06-08 08:53:02 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:156,568,798
INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 1501466 as yet unmatched pairs. 75124 records in RAM.
INFO 2026-06-08 08:53:03 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:169,749,519
INFO 2026-06-08 08:53:03 MarkDuplicates Tracking 1498804 as yet unmatched pairs. 72453 records in RAM.
INFO 2026-06-08 08:53:05 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:175,178,350
INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 1496729 as yet unmatched pairs. 70377 records in RAM.
INFO 2026-06-08 08:53:07 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:182,756,345
INFO 2026-06-08 08:53:07 MarkDuplicates Tracking 1493809 as yet unmatched pairs. 67436 records in RAM.
INFO 2026-06-08 08:53:09 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:188,995,744
INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 1492455 as yet unmatched pairs. 66065 records in RAM.
INFO 2026-06-08 08:53:11 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:189,010,706
INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 1489948 as yet unmatched pairs. 63548 records in RAM.
INFO 2026-06-08 08:53:13 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 2s. Last read position: chr2:190,970,701
INFO 2026-06-08 08:53:13 MarkDuplicates Tracking 1487445 as yet unmatched pairs. 61043 records in RAM.
INFO 2026-06-08 08:53:15 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 2s. Last read position: chr2:197,706,827
INFO 2026-06-08 08:53:15 MarkDuplicates Tracking 1482339 as yet unmatched pairs. 55924 records in RAM.
INFO 2026-06-08 08:53:17 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:205,683,300
INFO 2026-06-08 08:53:17 MarkDuplicates Tracking 1479992 as yet unmatched pairs. 53563 records in RAM.
INFO 2026-06-08 08:53:19 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:215,361,517
INFO 2026-06-08 08:53:19 MarkDuplicates Tracking 1492013 as yet unmatched pairs. 65579 records in RAM.
INFO 2026-06-08 08:53:21 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:215,367,912
INFO 2026-06-08 08:53:21 MarkDuplicates Tracking 1479202 as yet unmatched pairs. 52763 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,162
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 1495437 as yet unmatched pairs. 68987 records in RAM.
INFO 2026-06-08 08:53:24 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:215,375,375
INFO 2026-06-08 08:53:24 MarkDuplicates Tracking 1489225 as yet unmatched pairs. 62770 records in RAM.
INFO 2026-06-08 08:53:26 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr2:215,379,189
INFO 2026-06-08 08:53:26 MarkDuplicates Tracking 1475975 as yet unmatched pairs. 49520 records in RAM.
INFO 2026-06-08 08:53:28 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 2s. Last read position: chr2:215,384,076
INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 1478254 as yet unmatched pairs. 51784 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:215,392,955
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 1469856 as yet unmatched pairs. 43381 records in RAM.
INFO 2026-06-08 08:53:32 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr2:215,404,460
INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 1472912 as yet unmatched pairs. 46426 records in RAM.
INFO 2026-06-08 08:53:33 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:215,408,167
INFO 2026-06-08 08:53:33 MarkDuplicates Tracking 1466630 as yet unmatched pairs. 40135 records in RAM.
INFO 2026-06-08 08:53:35 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr2:215,414,862
INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 1461527 as yet unmatched pairs. 35023 records in RAM.
INFO 2026-06-08 08:53:36 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr2:215,424,283
INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 1461636 as yet unmatched pairs. 35127 records in RAM.
INFO 2026-06-08 08:53:38 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr2:215,431,935
INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 1460583 as yet unmatched pairs. 34066 records in RAM.
INFO 2026-06-08 08:53:40 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr2:216,678,940
INFO 2026-06-08 08:53:40 MarkDuplicates Tracking 1446454 as yet unmatched pairs. 19924 records in RAM.
INFO 2026-06-08 08:53:41 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr2:219,172,771
INFO 2026-06-08 08:53:41 MarkDuplicates Tracking 1443341 as yet unmatched pairs. 16801 records in RAM.
INFO 2026-06-08 08:53:43 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr2:223,977,589
INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 1440195 as yet unmatched pairs. 13631 records in RAM.
INFO 2026-06-08 08:53:45 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr2:231,355,827
INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 1437383 as yet unmatched pairs. 10798 records in RAM.
INFO 2026-06-08 08:53:46 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr2:233,556,899
INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 1434784 as yet unmatched pairs. 8189 records in RAM.
INFO 2026-06-08 08:53:48 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr2:237,372,152
INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 1432951 as yet unmatched pairs. 6340 records in RAM.
INFO 2026-06-08 08:53:49 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr2:241,163,382
INFO 2026-06-08 08:53:49 MarkDuplicates Tracking 1428737 as yet unmatched pairs. 2119 records in RAM.
INFO 2026-06-08 08:53:52 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 2s. Last read position: chr3:8,948,528
INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 1426022 as yet unmatched pairs. 82791 records in RAM.
INFO 2026-06-08 08:53:54 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:10,312,612
INFO 2026-06-08 08:53:54 MarkDuplicates Tracking 1422824 as yet unmatched pairs. 79587 records in RAM.
INFO 2026-06-08 08:53:56 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:13,571,324
INFO 2026-06-08 08:53:56 MarkDuplicates Tracking 1419937 as yet unmatched pairs. 76689 records in RAM.
INFO 2026-06-08 08:53:58 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 2s. Last read position: chr3:23,208,713
INFO 2026-06-08 08:53:58 MarkDuplicates Tracking 1417295 as yet unmatched pairs. 74023 records in RAM.
INFO 2026-06-08 08:54:00 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 2s. Last read position: chr3:33,717,808
INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 1414809 as yet unmatched pairs. 71521 records in RAM.
INFO 2026-06-08 08:54:02 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:39,102,706
INFO 2026-06-08 08:54:02 MarkDuplicates Tracking 1412026 as yet unmatched pairs. 68729 records in RAM.
INFO 2026-06-08 08:54:04 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:42,643,917
INFO 2026-06-08 08:54:04 MarkDuplicates Tracking 1409846 as yet unmatched pairs. 66538 records in RAM.
INFO 2026-06-08 08:54:05 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:47,277,294
INFO 2026-06-08 08:54:05 MarkDuplicates Tracking 1406560 as yet unmatched pairs. 63245 records in RAM.
INFO 2026-06-08 08:54:07 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:49,014,481
INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 1403924 as yet unmatched pairs. 60595 records in RAM.
INFO 2026-06-08 08:54:09 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:50,066,465
INFO 2026-06-08 08:54:09 MarkDuplicates Tracking 1400775 as yet unmatched pairs. 57444 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:52,504,101
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 1398251 as yet unmatched pairs. 54915 records in RAM.
INFO 2026-06-08 08:54:12 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:58,121,288
INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 1395234 as yet unmatched pairs. 51885 records in RAM.
INFO 2026-06-08 08:54:13 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:86,968,828
INFO 2026-06-08 08:54:13 MarkDuplicates Tracking 1392399 as yet unmatched pairs. 49031 records in RAM.
INFO 2026-06-08 08:54:15 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:101,574,230
INFO 2026-06-08 08:54:15 MarkDuplicates Tracking 1389935 as yet unmatched pairs. 46546 records in RAM.
INFO 2026-06-08 08:54:17 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:113,273,125
INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 1387647 as yet unmatched pairs. 44250 records in RAM.
INFO 2026-06-08 08:54:18 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:121,493,456
INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 1384680 as yet unmatched pairs. 41264 records in RAM.
INFO 2026-06-08 08:54:20 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:122,704,650
INFO 2026-06-08 08:54:20 MarkDuplicates Tracking 1383140 as yet unmatched pairs. 39714 records in RAM.
INFO 2026-06-08 08:54:21 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:125,891,241
INFO 2026-06-08 08:54:21 MarkDuplicates Tracking 1379458 as yet unmatched pairs. 36004 records in RAM.
INFO 2026-06-08 08:54:23 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr3:128,067,578
INFO 2026-06-08 08:54:23 MarkDuplicates Tracking 1377512 as yet unmatched pairs. 34053 records in RAM.
INFO 2026-06-08 08:54:25 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 2s. Last read position: chr3:129,268,594
INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 1374602 as yet unmatched pairs. 31127 records in RAM.
INFO 2026-06-08 08:54:26 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr3:131,016,287
INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 1370476 as yet unmatched pairs. 26984 records in RAM.
INFO 2026-06-08 08:54:28 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr3:138,171,780
INFO 2026-06-08 08:54:28 MarkDuplicates Tracking 1367783 as yet unmatched pairs. 24288 records in RAM.
INFO 2026-06-08 08:54:30 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 2s. Last read position: chr3:143,495,403
INFO 2026-06-08 08:54:30 MarkDuplicates Tracking 1365264 as yet unmatched pairs. 21763 records in RAM.
INFO 2026-06-08 08:54:33 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 2s. Last read position: chr3:152,459,318
INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 1362570 as yet unmatched pairs. 19048 records in RAM.
INFO 2026-06-08 08:54:35 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr3:169,766,969
INFO 2026-06-08 08:54:35 MarkDuplicates Tracking 1359740 as yet unmatched pairs. 16215 records in RAM.
INFO 2026-06-08 08:54:37 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr3:179,261,021
INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 1357270 as yet unmatched pairs. 13705 records in RAM.
INFO 2026-06-08 08:54:38 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr3:184,182,159
INFO 2026-06-08 08:54:38 MarkDuplicates Tracking 1354751 as yet unmatched pairs. 11172 records in RAM.
INFO 2026-06-08 08:54:40 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr3:184,711,015
INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 1351620 as yet unmatched pairs. 8036 records in RAM.
INFO 2026-06-08 08:54:41 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr3:188,609,465
INFO 2026-06-08 08:54:41 MarkDuplicates Tracking 1349909 as yet unmatched pairs. 6323 records in RAM.
INFO 2026-06-08 08:54:43 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr3:195,868,467
INFO 2026-06-08 08:54:43 MarkDuplicates Tracking 1347205 as yet unmatched pairs. 3598 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr4:664,899
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 1343434 as yet unmatched pairs. 35760 records in RAM.
INFO 2026-06-08 08:54:46 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr4:2,663,190
INFO 2026-06-08 08:54:46 MarkDuplicates Tracking 1340177 as yet unmatched pairs. 32491 records in RAM.
INFO 2026-06-08 08:54:48 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr4:7,855,404
INFO 2026-06-08 08:54:48 MarkDuplicates Tracking 1337325 as yet unmatched pairs. 29633 records in RAM.
INFO 2026-06-08 08:54:50 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr4:25,259,076
INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 1334261 as yet unmatched pairs. 26544 records in RAM.
INFO 2026-06-08 08:54:51 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr4:42,569,128
INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 1331855 as yet unmatched pairs. 24127 records in RAM.
INFO 2026-06-08 08:54:53 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr4:56,978,938
INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 1329083 as yet unmatched pairs. 21347 records in RAM.
INFO 2026-06-08 08:54:56 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 3s. Last read position: chr4:76,002,639
INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 1328724 as yet unmatched pairs. 20971 records in RAM.
INFO 2026-06-08 08:54:58 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr4:82,819,044
INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 1324725 as yet unmatched pairs. 16955 records in RAM.
INFO 2026-06-08 08:54:59 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr4:90,838,958
INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 1321466 as yet unmatched pairs. 13669 records in RAM.
INFO 2026-06-08 08:55:01 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr4:109,530,422
INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 1319154 as yet unmatched pairs. 11347 records in RAM.
INFO 2026-06-08 08:55:02 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr4:127,643,776
INFO 2026-06-08 08:55:02 MarkDuplicates Tracking 1316672 as yet unmatched pairs. 8858 records in RAM.
INFO 2026-06-08 08:55:04 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr4:150,852,438
INFO 2026-06-08 08:55:04 MarkDuplicates Tracking 1314280 as yet unmatched pairs. 6458 records in RAM.
INFO 2026-06-08 08:55:05 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr4:165,487,532
INFO 2026-06-08 08:55:05 MarkDuplicates Tracking 1311592 as yet unmatched pairs. 3745 records in RAM.
INFO 2026-06-08 08:55:07 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr4:186,603,196
INFO 2026-06-08 08:55:07 MarkDuplicates Tracking 1308924 as yet unmatched pairs. 1058 records in RAM.
INFO 2026-06-08 08:55:09 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 2s. Last read position: chr5:6,617,983
INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 1306054 as yet unmatched pairs. 67173 records in RAM.
INFO 2026-06-08 08:55:10 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr5:14,419,902
INFO 2026-06-08 08:55:10 MarkDuplicates Tracking 1304345 as yet unmatched pairs. 65452 records in RAM.
INFO 2026-06-08 08:55:12 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr5:32,585,573
INFO 2026-06-08 08:55:12 MarkDuplicates Tracking 1300089 as yet unmatched pairs. 61190 records in RAM.
INFO 2026-06-08 08:55:14 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:39,381,539
INFO 2026-06-08 08:55:14 MarkDuplicates Tracking 1297808 as yet unmatched pairs. 58883 records in RAM.
INFO 2026-06-08 08:55:15 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:55,960,401
INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 1295677 as yet unmatched pairs. 56749 records in RAM.
INFO 2026-06-08 08:55:16 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:71,109,524
INFO 2026-06-08 08:55:16 MarkDuplicates Tracking 1293224 as yet unmatched pairs. 54288 records in RAM.
INFO 2026-06-08 08:55:18 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr5:80,656,491
INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 1290848 as yet unmatched pairs. 51904 records in RAM.
INFO 2026-06-08 08:55:20 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:93,683,084
INFO 2026-06-08 08:55:20 MarkDuplicates Tracking 1288423 as yet unmatched pairs. 49472 records in RAM.
INFO 2026-06-08 08:55:21 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:113,084,114
INFO 2026-06-08 08:55:21 MarkDuplicates Tracking 1285919 as yet unmatched pairs. 46951 records in RAM.
INFO 2026-06-08 08:55:23 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr5:132,589,695
INFO 2026-06-08 08:55:23 MarkDuplicates Tracking 1283321 as yet unmatched pairs. 44331 records in RAM.
INFO 2026-06-08 08:55:24 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:134,899,502
INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 1280977 as yet unmatched pairs. 41971 records in RAM.
INFO 2026-06-08 08:55:26 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr5:138,925,288
INFO 2026-06-08 08:55:26 MarkDuplicates Tracking 1278387 as yet unmatched pairs. 39376 records in RAM.
INFO 2026-06-08 08:55:28 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 2s. Last read position: chr5:140,856,792
INFO 2026-06-08 08:55:28 MarkDuplicates Tracking 1275056 as yet unmatched pairs. 35994 records in RAM.
INFO 2026-06-08 08:55:30 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:141,863,971
INFO 2026-06-08 08:55:30 MarkDuplicates Tracking 1272516 as yet unmatched pairs. 33452 records in RAM.
INFO 2026-06-08 08:55:31 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr5:150,024,453
INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 1269775 as yet unmatched pairs. 30694 records in RAM.
INFO 2026-06-08 08:55:33 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,112
INFO 2026-06-08 08:55:33 MarkDuplicates Tracking 1273646 as yet unmatched pairs. 34564 records in RAM.
INFO 2026-06-08 08:55:35 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:150,403,145
INFO 2026-06-08 08:55:35 MarkDuplicates Tracking 1275897 as yet unmatched pairs. 36812 records in RAM.
INFO 2026-06-08 08:55:36 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr5:150,405,153
INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 1288759 as yet unmatched pairs. 49673 records in RAM.
INFO 2026-06-08 08:55:38 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr5:150,412,681
INFO 2026-06-08 08:55:38 MarkDuplicates Tracking 1256921 as yet unmatched pairs. 17835 records in RAM.
INFO 2026-06-08 08:55:39 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr5:151,799,292
INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 1254146 as yet unmatched pairs. 15048 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr5:170,266,825
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 1251441 as yet unmatched pairs. 12336 records in RAM.
INFO 2026-06-08 08:55:43 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr5:171,407,764
INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 1260404 as yet unmatched pairs. 21283 records in RAM.
INFO 2026-06-08 08:55:44 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr5:177,351,452
INFO 2026-06-08 08:55:44 MarkDuplicates Tracking 1246343 as yet unmatched pairs. 7207 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 2s. Last read position: chr5:179,716,263
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 1243417 as yet unmatched pairs. 4261 records in RAM.
INFO 2026-06-08 08:55:48 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 2s. Last read position: chr5:180,851,350
INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 1240140 as yet unmatched pairs. 971 records in RAM.
INFO 2026-06-08 08:55:51 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 2s. Last read position: chr6:7,182,042
INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 1238092 as yet unmatched pairs. 83970 records in RAM.
INFO 2026-06-08 08:55:53 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:7,581,362
INFO 2026-06-08 08:55:53 MarkDuplicates Tracking 1234664 as yet unmatched pairs. 80528 records in RAM.
INFO 2026-06-08 08:55:54 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:17,600,398
INFO 2026-06-08 08:55:54 MarkDuplicates Tracking 1231546 as yet unmatched pairs. 77395 records in RAM.
INFO 2026-06-08 08:55:56 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:26,204,865
INFO 2026-06-08 08:55:56 MarkDuplicates Tracking 1228755 as yet unmatched pairs. 74595 records in RAM.
INFO 2026-06-08 08:55:57 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:29,889,370
INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 1227097 as yet unmatched pairs. 72935 records in RAM.
INFO 2026-06-08 08:55:59 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:30,671,164
INFO 2026-06-08 08:55:59 MarkDuplicates Tracking 1223553 as yet unmatched pairs. 69378 records in RAM.
INFO 2026-06-08 08:56:00 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr6:31,271,104
INFO 2026-06-08 08:56:00 MarkDuplicates Tracking 1223568 as yet unmatched pairs. 69390 records in RAM.
INFO 2026-06-08 08:56:02 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:31,627,978
INFO 2026-06-08 08:56:02 MarkDuplicates Tracking 1218175 as yet unmatched pairs. 63991 records in RAM.
INFO 2026-06-08 08:56:03 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr6:31,815,722
INFO 2026-06-08 08:56:03 MarkDuplicates Tracking 1214853 as yet unmatched pairs. 60664 records in RAM.
INFO 2026-06-08 08:56:05 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr6:32,014,851
INFO 2026-06-08 08:56:05 MarkDuplicates Tracking 1213035 as yet unmatched pairs. 58841 records in RAM.
INFO 2026-06-08 08:56:06 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr6:32,642,662
INFO 2026-06-08 08:56:06 MarkDuplicates Tracking 1210592 as yet unmatched pairs. 56393 records in RAM.
INFO 2026-06-08 08:56:08 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr6:33,201,228
INFO 2026-06-08 08:56:08 MarkDuplicates Tracking 1207349 as yet unmatched pairs. 53141 records in RAM.
INFO 2026-06-08 08:56:09 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:33,443,419
INFO 2026-06-08 08:56:09 MarkDuplicates Tracking 1203900 as yet unmatched pairs. 49684 records in RAM.
INFO 2026-06-08 08:56:11 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:36,211,478
INFO 2026-06-08 08:56:11 MarkDuplicates Tracking 1200977 as yet unmatched pairs. 46746 records in RAM.
INFO 2026-06-08 08:56:12 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:42,676,056
INFO 2026-06-08 08:56:12 MarkDuplicates Tracking 1197956 as yet unmatched pairs. 43719 records in RAM.
INFO 2026-06-08 08:56:14 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:43,670,792
INFO 2026-06-08 08:56:14 MarkDuplicates Tracking 1194780 as yet unmatched pairs. 40539 records in RAM.
INFO 2026-06-08 08:56:16 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr6:49,728,822
INFO 2026-06-08 08:56:16 MarkDuplicates Tracking 1194270 as yet unmatched pairs. 40019 records in RAM.
INFO 2026-06-08 08:56:17 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr6:57,769,692
INFO 2026-06-08 08:56:17 MarkDuplicates Tracking 1189199 as yet unmatched pairs. 34921 records in RAM.
INFO 2026-06-08 08:56:19 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:75,138,452
INFO 2026-06-08 08:56:19 MarkDuplicates Tracking 1188739 as yet unmatched pairs. 34437 records in RAM.
INFO 2026-06-08 08:56:21 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 2s. Last read position: chr6:78,983,088
INFO 2026-06-08 08:56:21 MarkDuplicates Tracking 1184396 as yet unmatched pairs. 30082 records in RAM.
INFO 2026-06-08 08:56:22 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:89,081,140
INFO 2026-06-08 08:56:22 MarkDuplicates Tracking 1182005 as yet unmatched pairs. 27667 records in RAM.
INFO 2026-06-08 08:56:24 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr6:105,397,869
INFO 2026-06-08 08:56:24 MarkDuplicates Tracking 1179238 as yet unmatched pairs. 24889 records in RAM.
INFO 2026-06-08 08:56:26 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 2s. Last read position: chr6:109,379,594
INFO 2026-06-08 08:56:26 MarkDuplicates Tracking 1176770 as yet unmatched pairs. 22405 records in RAM.
INFO 2026-06-08 08:56:27 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:117,675,752
INFO 2026-06-08 08:56:27 MarkDuplicates Tracking 1173670 as yet unmatched pairs. 19277 records in RAM.
INFO 2026-06-08 08:56:29 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:135,185,979
INFO 2026-06-08 08:56:29 MarkDuplicates Tracking 1171346 as yet unmatched pairs. 16938 records in RAM.
INFO 2026-06-08 08:56:31 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:143,947,552
INFO 2026-06-08 08:56:31 MarkDuplicates Tracking 1168543 as yet unmatched pairs. 14130 records in RAM.
INFO 2026-06-08 08:56:33 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr6:150,831,763
INFO 2026-06-08 08:56:33 MarkDuplicates Tracking 1165751 as yet unmatched pairs. 11331 records in RAM.
INFO 2026-06-08 08:56:34 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr6:158,063,799
INFO 2026-06-08 08:56:34 MarkDuplicates Tracking 1163032 as yet unmatched pairs. 8605 records in RAM.
INFO 2026-06-08 08:56:36 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr6:159,232,844
INFO 2026-06-08 08:56:36 MarkDuplicates Tracking 1160169 as yet unmatched pairs. 5739 records in RAM.
INFO 2026-06-08 08:56:37 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr6:163,567,419
INFO 2026-06-08 08:56:37 MarkDuplicates Tracking 1158600 as yet unmatched pairs. 4168 records in RAM.
INFO 2026-06-08 08:56:39 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr6:170,583,711
INFO 2026-06-08 08:56:39 MarkDuplicates Tracking 1154557 as yet unmatched pairs. 124 records in RAM.
INFO 2026-06-08 08:56:41 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 2s. Last read position: chr7:5,313,585
INFO 2026-06-08 08:56:41 MarkDuplicates Tracking 1151263 as yet unmatched pairs. 85065 records in RAM.
INFO 2026-06-08 08:56:43 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,422
INFO 2026-06-08 08:56:43 MarkDuplicates Tracking 1149859 as yet unmatched pairs. 83653 records in RAM.
INFO 2026-06-08 08:56:44 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr7:6,474,211
INFO 2026-06-08 08:56:44 MarkDuplicates Tracking 1145505 as yet unmatched pairs. 79295 records in RAM.
INFO 2026-06-08 08:56:46 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr7:24,863,198
INFO 2026-06-08 08:56:46 MarkDuplicates Tracking 1142551 as yet unmatched pairs. 76333 records in RAM.
INFO 2026-06-08 08:56:47 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:36,594,410
INFO 2026-06-08 08:56:47 MarkDuplicates Tracking 1139801 as yet unmatched pairs. 73568 records in RAM.
INFO 2026-06-08 08:56:49 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr7:44,107,476
INFO 2026-06-08 08:56:49 MarkDuplicates Tracking 1137460 as yet unmatched pairs. 71221 records in RAM.
INFO 2026-06-08 08:56:50 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:44,697,050
INFO 2026-06-08 08:56:50 MarkDuplicates Tracking 1134127 as yet unmatched pairs. 67878 records in RAM.
INFO 2026-06-08 08:56:52 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:55,165,421
INFO 2026-06-08 08:56:52 MarkDuplicates Tracking 1131486 as yet unmatched pairs. 65230 records in RAM.
INFO 2026-06-08 08:56:54 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr7:70,764,889
INFO 2026-06-08 08:56:54 MarkDuplicates Tracking 1128949 as yet unmatched pairs. 62672 records in RAM.
INFO 2026-06-08 08:56:55 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:73,226,001
INFO 2026-06-08 08:56:55 MarkDuplicates Tracking 1127451 as yet unmatched pairs. 61170 records in RAM.
INFO 2026-06-08 08:56:57 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:74,338,458
INFO 2026-06-08 08:56:57 MarkDuplicates Tracking 1124885 as yet unmatched pairs. 58596 records in RAM.
INFO 2026-06-08 08:56:58 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:75,421,801
INFO 2026-06-08 08:56:58 MarkDuplicates Tracking 1123451 as yet unmatched pairs. 57157 records in RAM.
INFO 2026-06-08 08:57:00 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr7:76,304,002
INFO 2026-06-08 08:57:00 MarkDuplicates Tracking 1121707 as yet unmatched pairs. 55402 records in RAM.
INFO 2026-06-08 08:57:01 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:77,696,532
INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 1118511 as yet unmatched pairs. 52203 records in RAM.
INFO 2026-06-08 08:57:03 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:92,042,750
INFO 2026-06-08 08:57:03 MarkDuplicates Tracking 1116860 as yet unmatched pairs. 50539 records in RAM.
INFO 2026-06-08 08:57:05 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 2s. Last read position: chr7:94,397,748
INFO 2026-06-08 08:57:05 MarkDuplicates Tracking 1115839 as yet unmatched pairs. 49509 records in RAM.
INFO 2026-06-08 08:57:08 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 2s. Last read position: chr7:94,417,803
INFO 2026-06-08 08:57:08 MarkDuplicates Tracking 1112333 as yet unmatched pairs. 45993 records in RAM.
INFO 2026-06-08 08:57:09 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:98,212,588
INFO 2026-06-08 08:57:09 MarkDuplicates Tracking 1107730 as yet unmatched pairs. 41386 records in RAM.
INFO 2026-06-08 08:57:11 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:99,967,076
INFO 2026-06-08 08:57:11 MarkDuplicates Tracking 1105976 as yet unmatched pairs. 39626 records in RAM.
INFO 2026-06-08 08:57:12 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr7:100,436,218
INFO 2026-06-08 08:57:12 MarkDuplicates Tracking 1102421 as yet unmatched pairs. 36049 records in RAM.
INFO 2026-06-08 08:57:14 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:101,216,529
INFO 2026-06-08 08:57:14 MarkDuplicates Tracking 1099429 as yet unmatched pairs. 33049 records in RAM.
INFO 2026-06-08 08:57:15 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:102,653,499
INFO 2026-06-08 08:57:15 MarkDuplicates Tracking 1097933 as yet unmatched pairs. 31551 records in RAM.
INFO 2026-06-08 08:57:17 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:107,146,317
INFO 2026-06-08 08:57:17 MarkDuplicates Tracking 1095430 as yet unmatched pairs. 29045 records in RAM.
INFO 2026-06-08 08:57:18 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr7:122,876,165
INFO 2026-06-08 08:57:18 MarkDuplicates Tracking 1092940 as yet unmatched pairs. 26529 records in RAM.
INFO 2026-06-08 08:57:20 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr7:127,904,781
INFO 2026-06-08 08:57:20 MarkDuplicates Tracking 1092819 as yet unmatched pairs. 26408 records in RAM.
INFO 2026-06-08 08:57:21 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr7:129,018,068
INFO 2026-06-08 08:57:21 MarkDuplicates Tracking 1087743 as yet unmatched pairs. 21322 records in RAM.
INFO 2026-06-08 08:57:23 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr7:135,638,582
INFO 2026-06-08 08:57:23 MarkDuplicates Tracking 1085522 as yet unmatched pairs. 19094 records in RAM.
INFO 2026-06-08 08:57:24 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:138,919,287
INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 1082675 as yet unmatched pairs. 16246 records in RAM.
INFO 2026-06-08 08:57:26 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:141,006,443
INFO 2026-06-08 08:57:26 MarkDuplicates Tracking 1079511 as yet unmatched pairs. 13082 records in RAM.
INFO 2026-06-08 08:57:28 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr7:144,183,975
INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 1076884 as yet unmatched pairs. 10448 records in RAM.
INFO 2026-06-08 08:57:30 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr7:149,021,109
INFO 2026-06-08 08:57:30 MarkDuplicates Tracking 1075946 as yet unmatched pairs. 9504 records in RAM.
INFO 2026-06-08 08:57:31 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr7:151,077,632
INFO 2026-06-08 08:57:31 MarkDuplicates Tracking 1072085 as yet unmatched pairs. 5625 records in RAM.
INFO 2026-06-08 08:58:35 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 63s. Last read position: chr7:152,202,933
INFO 2026-06-08 08:58:35 MarkDuplicates Tracking 1070302 as yet unmatched pairs. 3830 records in RAM.
INFO 2026-06-08 08:58:37 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 2s. Last read position: chr8:1,864,742
INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 1066456 as yet unmatched pairs. 54812 records in RAM.
INFO 2026-06-08 08:58:38 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr8:17,645,961
INFO 2026-06-08 08:58:38 MarkDuplicates Tracking 1063988 as yet unmatched pairs. 52340 records in RAM.
INFO 2026-06-08 08:58:40 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr8:22,615,700
INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 1061026 as yet unmatched pairs. 49370 records in RAM.
INFO 2026-06-08 08:58:41 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr8:29,165,702
INFO 2026-06-08 08:58:41 MarkDuplicates Tracking 1057968 as yet unmatched pairs. 46303 records in RAM.
INFO 2026-06-08 08:58:43 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr8:38,315,909
INFO 2026-06-08 08:58:43 MarkDuplicates Tracking 1055308 as yet unmatched pairs. 43636 records in RAM.
INFO 2026-06-08 08:58:45 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr8:38,846,695
INFO 2026-06-08 08:58:45 MarkDuplicates Tracking 1053217 as yet unmatched pairs. 41545 records in RAM.
INFO 2026-06-08 08:58:46 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr8:47,774,299
INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 1049915 as yet unmatched pairs. 38234 records in RAM.
INFO 2026-06-08 08:58:48 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr8:58,570,921
INFO 2026-06-08 08:58:48 MarkDuplicates Tracking 1047456 as yet unmatched pairs. 35773 records in RAM.
INFO 2026-06-08 08:58:50 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr8:69,586,389
INFO 2026-06-08 08:58:50 MarkDuplicates Tracking 1044745 as yet unmatched pairs. 33054 records in RAM.
INFO 2026-06-08 08:58:52 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr8:80,064,545
INFO 2026-06-08 08:58:52 MarkDuplicates Tracking 1042216 as yet unmatched pairs. 30524 records in RAM.
INFO 2026-06-08 08:58:53 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr8:95,252,216
INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 1039504 as yet unmatched pairs. 27803 records in RAM.
INFO 2026-06-08 08:58:55 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr8:100,240,878
INFO 2026-06-08 08:58:55 MarkDuplicates Tracking 1036927 as yet unmatched pairs. 25210 records in RAM.
INFO 2026-06-08 08:58:56 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr8:101,558,577
INFO 2026-06-08 08:58:56 MarkDuplicates Tracking 1034975 as yet unmatched pairs. 23254 records in RAM.
INFO 2026-06-08 08:58:58 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr8:112,265,427
INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 1031335 as yet unmatched pairs. 19597 records in RAM.
INFO 2026-06-08 08:58:59 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr8:120,315,978
INFO 2026-06-08 08:58:59 MarkDuplicates Tracking 1028935 as yet unmatched pairs. 17175 records in RAM.
INFO 2026-06-08 08:59:01 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr8:127,740,618
INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 1026610 as yet unmatched pairs. 14845 records in RAM.
INFO 2026-06-08 08:59:03 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr8:142,315,043
INFO 2026-06-08 08:59:03 MarkDuplicates Tracking 1023220 as yet unmatched pairs. 11415 records in RAM.
INFO 2026-06-08 08:59:04 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,200
INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 1019650 as yet unmatched pairs. 7834 records in RAM.
INFO 2026-06-08 08:59:05 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr8:143,921,301
INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 1019170 as yet unmatched pairs. 7352 records in RAM.
INFO 2026-06-08 08:59:07 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr8:144,313,523
INFO 2026-06-08 08:59:07 MarkDuplicates Tracking 1014250 as yet unmatched pairs. 2430 records in RAM.
INFO 2026-06-08 08:59:09 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 2s. Last read position: chr9:712,434
INFO 2026-06-08 08:59:09 MarkDuplicates Tracking 1011323 as yet unmatched pairs. 66781 records in RAM.
INFO 2026-06-08 08:59:10 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr9:5,830,907
INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 1008382 as yet unmatched pairs. 63833 records in RAM.
INFO 2026-06-08 08:59:12 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr9:14,088,281
INFO 2026-06-08 08:59:12 MarkDuplicates Tracking 1021470 as yet unmatched pairs. 76899 records in RAM.
INFO 2026-06-08 08:59:14 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr9:14,120,602
INFO 2026-06-08 08:59:14 MarkDuplicates Tracking 1017945 as yet unmatched pairs. 73374 records in RAM.
INFO 2026-06-08 08:59:16 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr9:14,306,947
INFO 2026-06-08 08:59:16 MarkDuplicates Tracking 1018801 as yet unmatched pairs. 74225 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr9:14,307,426
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 1017365 as yet unmatched pairs. 72774 records in RAM.
INFO 2026-06-08 08:59:19 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr9:21,970,939
INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 997720 as yet unmatched pairs. 53116 records in RAM.
INFO 2026-06-08 08:59:20 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr9:33,963,725
INFO 2026-06-08 08:59:20 MarkDuplicates Tracking 993168 as yet unmatched pairs. 48554 records in RAM.
INFO 2026-06-08 08:59:22 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr9:35,555,626
INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 989945 as yet unmatched pairs. 45319 records in RAM.
INFO 2026-06-08 08:59:24 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr9:35,829,652
INFO 2026-06-08 08:59:24 MarkDuplicates Tracking 987427 as yet unmatched pairs. 42799 records in RAM.
INFO 2026-06-08 08:59:25 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr9:68,245,258
INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 984646 as yet unmatched pairs. 39997 records in RAM.
INFO 2026-06-08 08:59:26 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr9:86,040,854
INFO 2026-06-08 08:59:26 MarkDuplicates Tracking 982322 as yet unmatched pairs. 37661 records in RAM.
INFO 2026-06-08 08:59:28 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr9:93,262,065
INFO 2026-06-08 08:59:28 MarkDuplicates Tracking 979290 as yet unmatched pairs. 34627 records in RAM.
INFO 2026-06-08 08:59:30 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr9:99,968,527
INFO 2026-06-08 08:59:30 MarkDuplicates Tracking 976349 as yet unmatched pairs. 31673 records in RAM.
INFO 2026-06-08 08:59:32 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr9:111,442,339
INFO 2026-06-08 08:59:32 MarkDuplicates Tracking 973959 as yet unmatched pairs. 29249 records in RAM.
INFO 2026-06-08 08:59:34 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 2s. Last read position: chr9:115,087,027
INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 971015 as yet unmatched pairs. 26303 records in RAM.
INFO 2026-06-08 08:59:35 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr9:124,353,478
INFO 2026-06-08 08:59:35 MarkDuplicates Tracking 968189 as yet unmatched pairs. 23471 records in RAM.
INFO 2026-06-08 08:59:37 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr9:127,843,141
INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 965702 as yet unmatched pairs. 20977 records in RAM.
INFO 2026-06-08 08:59:39 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr9:128,720,209
INFO 2026-06-08 08:59:39 MarkDuplicates Tracking 962446 as yet unmatched pairs. 17708 records in RAM.
INFO 2026-06-08 08:59:40 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:131,117,798
INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 959493 as yet unmatched pairs. 14746 records in RAM.
INFO 2026-06-08 08:59:42 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr9:133,102,130
INFO 2026-06-08 08:59:42 MarkDuplicates Tracking 956696 as yet unmatched pairs. 11942 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr9:134,812,632
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 953763 as yet unmatched pairs. 9007 records in RAM.
INFO 2026-06-08 08:59:45 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr9:136,505,771
INFO 2026-06-08 08:59:45 MarkDuplicates Tracking 950115 as yet unmatched pairs. 5355 records in RAM.
INFO 2026-06-08 08:59:46 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr9:137,241,343
INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 946223 as yet unmatched pairs. 1461 records in RAM.
INFO 2026-06-08 08:59:48 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 2s. Last read position: chr10:5,446,774
INFO 2026-06-08 08:59:48 MarkDuplicates Tracking 943615 as yet unmatched pairs. 61706 records in RAM.
INFO 2026-06-08 08:59:50 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr10:12,029,179
INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 940829 as yet unmatched pairs. 58914 records in RAM.
INFO 2026-06-08 08:59:51 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr10:21,920,806
INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 938137 as yet unmatched pairs. 56210 records in RAM.
INFO 2026-06-08 08:59:53 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr10:29,523,863
INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 935727 as yet unmatched pairs. 53791 records in RAM.
INFO 2026-06-08 08:59:54 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr10:32,908,388
INFO 2026-06-08 08:59:54 MarkDuplicates Tracking 934436 as yet unmatched pairs. 52494 records in RAM.
INFO 2026-06-08 08:59:56 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr10:38,054,485
INFO 2026-06-08 08:59:56 MarkDuplicates Tracking 931659 as yet unmatched pairs. 49708 records in RAM.
INFO 2026-06-08 08:59:58 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr10:46,011,008
INFO 2026-06-08 08:59:58 MarkDuplicates Tracking 930095 as yet unmatched pairs. 48138 records in RAM.
INFO 2026-06-08 08:59:59 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr10:50,068,164
INFO 2026-06-08 08:59:59 MarkDuplicates Tracking 927453 as yet unmatched pairs. 45494 records in RAM.
INFO 2026-06-08 09:00:00 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr10:63,153,677
INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 924884 as yet unmatched pairs. 42919 records in RAM.
INFO 2026-06-08 09:00:02 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr10:70,153,942
INFO 2026-06-08 09:00:02 MarkDuplicates Tracking 923446 as yet unmatched pairs. 41475 records in RAM.
INFO 2026-06-08 09:00:03 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr10:73,398,371
INFO 2026-06-08 09:00:03 MarkDuplicates Tracking 919317 as yet unmatched pairs. 37342 records in RAM.
INFO 2026-06-08 09:00:05 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr10:73,817,518
INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 916905 as yet unmatched pairs. 34925 records in RAM.
INFO 2026-06-08 09:00:07 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr10:77,806,899
INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 914822 as yet unmatched pairs. 32829 records in RAM.
INFO 2026-06-08 09:00:08 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr10:78,037,199
INFO 2026-06-08 09:00:08 MarkDuplicates Tracking 919823 as yet unmatched pairs. 37817 records in RAM.
INFO 2026-06-08 09:00:09 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr10:80,164,077
INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 909050 as yet unmatched pairs. 27037 records in RAM.
INFO 2026-06-08 09:00:11 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr10:87,305,640
INFO 2026-06-08 09:00:11 MarkDuplicates Tracking 906366 as yet unmatched pairs. 24343 records in RAM.
INFO 2026-06-08 09:00:12 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr10:91,630,588
INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 903859 as yet unmatched pairs. 21833 records in RAM.
INFO 2026-06-08 09:00:14 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr10:96,623,467
INFO 2026-06-08 09:00:14 MarkDuplicates Tracking 901165 as yet unmatched pairs. 19136 records in RAM.
INFO 2026-06-08 09:00:15 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr10:101,797,973
INFO 2026-06-08 09:00:15 MarkDuplicates Tracking 899196 as yet unmatched pairs. 17166 records in RAM.
INFO 2026-06-08 09:00:18 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 2s. Last read position: chr10:103,602,907
INFO 2026-06-08 09:00:18 MarkDuplicates Tracking 895639 as yet unmatched pairs. 13599 records in RAM.
INFO 2026-06-08 09:00:19 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr10:116,954,104
INFO 2026-06-08 09:00:19 MarkDuplicates Tracking 893958 as yet unmatched pairs. 11901 records in RAM.
INFO 2026-06-08 09:00:21 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr10:121,479,960
INFO 2026-06-08 09:00:21 MarkDuplicates Tracking 898659 as yet unmatched pairs. 16600 records in RAM.
INFO 2026-06-08 09:00:22 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr10:121,520,027
INFO 2026-06-08 09:00:22 MarkDuplicates Tracking 894918 as yet unmatched pairs. 12853 records in RAM.
INFO 2026-06-08 09:00:23 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr10:122,514,201
INFO 2026-06-08 09:00:23 MarkDuplicates Tracking 885654 as yet unmatched pairs. 3587 records in RAM.
INFO 2026-06-08 09:00:25 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr10:133,268,004
INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 883396 as yet unmatched pairs. 1291 records in RAM.
INFO 2026-06-08 09:00:27 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 2s. Last read position: chr11:597,427
INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 880018 as yet unmatched pairs. 95736 records in RAM.
INFO 2026-06-08 09:00:29 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr11:1,853,167
INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 876377 as yet unmatched pairs. 92089 records in RAM.
INFO 2026-06-08 09:00:31 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr11:6,547,346
INFO 2026-06-08 09:00:31 MarkDuplicates Tracking 873475 as yet unmatched pairs. 89179 records in RAM.
INFO 2026-06-08 09:00:33 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 2s. Last read position: chr11:10,508,383
INFO 2026-06-08 09:00:33 MarkDuplicates Tracking 870355 as yet unmatched pairs. 86055 records in RAM.
INFO 2026-06-08 09:00:35 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr11:17,094,373
INFO 2026-06-08 09:00:35 MarkDuplicates Tracking 867952 as yet unmatched pairs. 83649 records in RAM.
INFO 2026-06-08 09:00:36 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr11:34,096,607
INFO 2026-06-08 09:00:36 MarkDuplicates Tracking 865700 as yet unmatched pairs. 81386 records in RAM.
INFO 2026-06-08 09:00:39 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 2s. Last read position: chr11:46,312,621
INFO 2026-06-08 09:00:39 MarkDuplicates Tracking 863187 as yet unmatched pairs. 78862 records in RAM.
INFO 2026-06-08 09:00:40 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr11:47,569,697
INFO 2026-06-08 09:00:40 MarkDuplicates Tracking 859739 as yet unmatched pairs. 75412 records in RAM.
INFO 2026-06-08 09:00:42 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr11:57,614,374
INFO 2026-06-08 09:00:42 MarkDuplicates Tracking 857769 as yet unmatched pairs. 73437 records in RAM.
INFO 2026-06-08 09:00:43 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:60,924,705
INFO 2026-06-08 09:00:43 MarkDuplicates Tracking 854296 as yet unmatched pairs. 69957 records in RAM.
INFO 2026-06-08 09:00:45 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr11:61,967,315
INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 851695 as yet unmatched pairs. 67345 records in RAM.
INFO 2026-06-08 09:00:46 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:62,518,120
INFO 2026-06-08 09:00:46 MarkDuplicates Tracking 849724 as yet unmatched pairs. 65374 records in RAM.
INFO 2026-06-08 09:00:48 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr11:62,528,270
INFO 2026-06-08 09:00:48 MarkDuplicates Tracking 848003 as yet unmatched pairs. 63652 records in RAM.
INFO 2026-06-08 09:00:49 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:62,615,694
INFO 2026-06-08 09:00:49 MarkDuplicates Tracking 844343 as yet unmatched pairs. 59991 records in RAM.
INFO 2026-06-08 09:00:51 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:63,546,194
INFO 2026-06-08 09:00:51 MarkDuplicates Tracking 841960 as yet unmatched pairs. 57608 records in RAM.
INFO 2026-06-08 09:00:52 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:64,314,786
INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 838103 as yet unmatched pairs. 53744 records in RAM.
INFO 2026-06-08 09:00:54 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:65,121,026
INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 835654 as yet unmatched pairs. 51290 records in RAM.
INFO 2026-06-08 09:00:55 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:65,582,707
INFO 2026-06-08 09:00:55 MarkDuplicates Tracking 831998 as yet unmatched pairs. 47613 records in RAM.
INFO 2026-06-08 09:00:57 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:65,856,069
INFO 2026-06-08 09:00:57 MarkDuplicates Tracking 830470 as yet unmatched pairs. 46083 records in RAM.
INFO 2026-06-08 09:00:58 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:66,592,583
INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 825196 as yet unmatched pairs. 40807 records in RAM.
INFO 2026-06-08 09:01:00 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr11:67,396,015
INFO 2026-06-08 09:01:00 MarkDuplicates Tracking 822168 as yet unmatched pairs. 37778 records in RAM.
INFO 2026-06-08 09:01:01 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr11:68,416,441
INFO 2026-06-08 09:01:01 MarkDuplicates Tracking 818774 as yet unmatched pairs. 34373 records in RAM.
INFO 2026-06-08 09:01:03 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr11:70,338,377
INFO 2026-06-08 09:01:03 MarkDuplicates Tracking 816123 as yet unmatched pairs. 31721 records in RAM.
INFO 2026-06-08 09:01:05 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 2s. Last read position: chr11:72,229,510
INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 813550 as yet unmatched pairs. 29145 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 2s. Last read position: chr11:74,100,552
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 810046 as yet unmatched pairs. 25610 records in RAM.
INFO 2026-06-08 09:01:10 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 2s. Last read position: chr11:77,343,866
INFO 2026-06-08 09:01:10 MarkDuplicates Tracking 807419 as yet unmatched pairs. 22974 records in RAM.
INFO 2026-06-08 09:01:11 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr11:87,091,394
INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 804777 as yet unmatched pairs. 20325 records in RAM.
INFO 2026-06-08 09:01:13 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:102,206,029
INFO 2026-06-08 09:01:13 MarkDuplicates Tracking 803748 as yet unmatched pairs. 19276 records in RAM.
INFO 2026-06-08 09:01:14 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:110,462,381
INFO 2026-06-08 09:01:14 MarkDuplicates Tracking 799517 as yet unmatched pairs. 15040 records in RAM.
INFO 2026-06-08 09:01:16 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:117,204,316
INFO 2026-06-08 09:01:16 MarkDuplicates Tracking 796948 as yet unmatched pairs. 12466 records in RAM.
INFO 2026-06-08 09:01:17 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:118,557,759
INFO 2026-06-08 09:01:17 MarkDuplicates Tracking 794250 as yet unmatched pairs. 9765 records in RAM.
INFO 2026-06-08 09:01:19 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:119,024,908
INFO 2026-06-08 09:01:19 MarkDuplicates Tracking 791676 as yet unmatched pairs. 7190 records in RAM.
INFO 2026-06-08 09:01:21 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:123,059,497
INFO 2026-06-08 09:01:21 MarkDuplicates Tracking 789414 as yet unmatched pairs. 4915 records in RAM.
INFO 2026-06-08 09:01:23 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:129,873,756
INFO 2026-06-08 09:01:23 MarkDuplicates Tracking 786409 as yet unmatched pairs. 1906 records in RAM.
INFO 2026-06-08 09:01:25 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 2s. Last read position: chr12:862,193
INFO 2026-06-08 09:01:25 MarkDuplicates Tracking 783845 as yet unmatched pairs. 91417 records in RAM.
INFO 2026-06-08 09:01:26 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr12:4,274,101
INFO 2026-06-08 09:01:26 MarkDuplicates Tracking 780969 as yet unmatched pairs. 88536 records in RAM.
INFO 2026-06-08 09:01:28 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr12:6,601,451
INFO 2026-06-08 09:01:28 MarkDuplicates Tracking 777971 as yet unmatched pairs. 85538 records in RAM.
INFO 2026-06-08 09:01:30 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr12:6,966,462
INFO 2026-06-08 09:01:30 MarkDuplicates Tracking 775316 as yet unmatched pairs. 82878 records in RAM.
INFO 2026-06-08 09:01:31 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr12:9,077,779
INFO 2026-06-08 09:01:31 MarkDuplicates Tracking 772320 as yet unmatched pairs. 79875 records in RAM.
INFO 2026-06-08 09:01:33 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr12:12,875,942
INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 769700 as yet unmatched pairs. 77253 records in RAM.
INFO 2026-06-08 09:01:34 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr12:26,486,253
INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 767338 as yet unmatched pairs. 74883 records in RAM.
INFO 2026-06-08 09:01:36 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr12:40,489,829
INFO 2026-06-08 09:01:36 MarkDuplicates Tracking 764693 as yet unmatched pairs. 72226 records in RAM.
INFO 2026-06-08 09:01:38 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 2s. Last read position: chr12:48,343,509
INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 762080 as yet unmatched pairs. 69611 records in RAM.
INFO 2026-06-08 09:01:40 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr12:49,050,601
INFO 2026-06-08 09:01:40 MarkDuplicates Tracking 759908 as yet unmatched pairs. 67438 records in RAM.
INFO 2026-06-08 09:01:42 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr12:49,651,985
INFO 2026-06-08 09:01:42 MarkDuplicates Tracking 757312 as yet unmatched pairs. 64839 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr12:51,991,976
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 754434 as yet unmatched pairs. 61958 records in RAM.
INFO 2026-06-08 09:01:45 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr12:53,308,722
INFO 2026-06-08 09:01:45 MarkDuplicates Tracking 751478 as yet unmatched pairs. 58995 records in RAM.
INFO 2026-06-08 09:01:46 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr12:54,283,911
INFO 2026-06-08 09:01:46 MarkDuplicates Tracking 750259 as yet unmatched pairs. 57769 records in RAM.
INFO 2026-06-08 09:01:48 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr12:54,645,613
INFO 2026-06-08 09:01:48 MarkDuplicates Tracking 782151 as yet unmatched pairs. 89657 records in RAM.
INFO 2026-06-08 09:01:49 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr12:55,700,203
INFO 2026-06-08 09:01:49 MarkDuplicates Tracking 743214 as yet unmatched pairs. 50719 records in RAM.
INFO 2026-06-08 09:01:51 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr12:56,181,525
INFO 2026-06-08 09:01:51 MarkDuplicates Tracking 740811 as yet unmatched pairs. 48315 records in RAM.
INFO 2026-06-08 09:01:52 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr12:56,645,177
INFO 2026-06-08 09:01:52 MarkDuplicates Tracking 738826 as yet unmatched pairs. 46329 records in RAM.
INFO 2026-06-08 09:01:54 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr12:57,106,206
INFO 2026-06-08 09:01:54 MarkDuplicates Tracking 735913 as yet unmatched pairs. 43415 records in RAM.
INFO 2026-06-08 09:01:56 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr12:57,231,851
INFO 2026-06-08 09:01:56 MarkDuplicates Tracking 732638 as yet unmatched pairs. 40138 records in RAM.
INFO 2026-06-08 09:01:57 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:58,874,562
INFO 2026-06-08 09:01:57 MarkDuplicates Tracking 729638 as yet unmatched pairs. 37136 records in RAM.
INFO 2026-06-08 09:01:59 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr12:68,839,359
INFO 2026-06-08 09:01:59 MarkDuplicates Tracking 727171 as yet unmatched pairs. 34660 records in RAM.
INFO 2026-06-08 09:02:00 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:82,353,224
INFO 2026-06-08 09:02:00 MarkDuplicates Tracking 724519 as yet unmatched pairs. 31997 records in RAM.
INFO 2026-06-08 09:02:02 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr12:95,483,237
INFO 2026-06-08 09:02:02 MarkDuplicates Tracking 722155 as yet unmatched pairs. 29624 records in RAM.
INFO 2026-06-08 09:02:04 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr12:103,938,443
INFO 2026-06-08 09:02:04 MarkDuplicates Tracking 719892 as yet unmatched pairs. 27361 records in RAM.
INFO 2026-06-08 09:02:06 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 2s. Last read position: chr12:108,519,277
INFO 2026-06-08 09:02:06 MarkDuplicates Tracking 716931 as yet unmatched pairs. 24391 records in RAM.
INFO 2026-06-08 09:02:08 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr12:110,571,053
INFO 2026-06-08 09:02:08 MarkDuplicates Tracking 714144 as yet unmatched pairs. 21600 records in RAM.
INFO 2026-06-08 09:02:10 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:112,907,062
INFO 2026-06-08 09:02:10 MarkDuplicates Tracking 711649 as yet unmatched pairs. 19100 records in RAM.
INFO 2026-06-08 09:02:11 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr12:118,066,498
INFO 2026-06-08 09:02:11 MarkDuplicates Tracking 708214 as yet unmatched pairs. 15665 records in RAM.
INFO 2026-06-08 09:02:13 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr12:120,696,472
INFO 2026-06-08 09:02:13 MarkDuplicates Tracking 705649 as yet unmatched pairs. 13096 records in RAM.
INFO 2026-06-08 09:02:15 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr12:122,364,024
INFO 2026-06-08 09:02:15 MarkDuplicates Tracking 702803 as yet unmatched pairs. 10246 records in RAM.
INFO 2026-06-08 09:02:16 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr12:124,334,492
INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 699665 as yet unmatched pairs. 7099 records in RAM.
INFO 2026-06-08 09:02:18 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr12:131,913,785
INFO 2026-06-08 09:02:18 MarkDuplicates Tracking 697065 as yet unmatched pairs. 4499 records in RAM.
INFO 2026-06-08 09:02:19 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr12:132,804,772
INFO 2026-06-08 09:02:19 MarkDuplicates Tracking 693813 as yet unmatched pairs. 1238 records in RAM.
INFO 2026-06-08 09:02:21 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr13:21,413,752
INFO 2026-06-08 09:02:21 MarkDuplicates Tracking 690903 as yet unmatched pairs. 17179 records in RAM.
INFO 2026-06-08 09:02:23 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr13:32,687,186
INFO 2026-06-08 09:02:23 MarkDuplicates Tracking 688296 as yet unmatched pairs. 14567 records in RAM.
INFO 2026-06-08 09:02:24 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr13:43,968,692
INFO 2026-06-08 09:02:24 MarkDuplicates Tracking 685532 as yet unmatched pairs. 11803 records in RAM.
INFO 2026-06-08 09:02:26 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr13:52,029,944
INFO 2026-06-08 09:02:26 MarkDuplicates Tracking 683052 as yet unmatched pairs. 9316 records in RAM.
INFO 2026-06-08 09:02:27 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr13:97,391,223
INFO 2026-06-08 09:02:27 MarkDuplicates Tracking 680567 as yet unmatched pairs. 6828 records in RAM.
INFO 2026-06-08 09:02:29 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr13:110,195,098
INFO 2026-06-08 09:02:29 MarkDuplicates Tracking 678177 as yet unmatched pairs. 4434 records in RAM.
INFO 2026-06-08 09:02:30 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr13:113,637,840
INFO 2026-06-08 09:02:30 MarkDuplicates Tracking 674708 as yet unmatched pairs. 960 records in RAM.
INFO 2026-06-08 09:02:33 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 2s. Last read position: chr14:21,392,585
INFO 2026-06-08 09:02:33 MarkDuplicates Tracking 672477 as yet unmatched pairs. 66862 records in RAM.
INFO 2026-06-08 09:02:34 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr14:23,063,524
INFO 2026-06-08 09:02:34 MarkDuplicates Tracking 669227 as yet unmatched pairs. 63610 records in RAM.
INFO 2026-06-08 09:02:37 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 2s. Last read position: chr14:24,164,658
INFO 2026-06-08 09:02:37 MarkDuplicates Tracking 667281 as yet unmatched pairs. 61663 records in RAM.
INFO 2026-06-08 09:02:38 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr14:31,150,092
INFO 2026-06-08 09:02:38 MarkDuplicates Tracking 663190 as yet unmatched pairs. 57572 records in RAM.
INFO 2026-06-08 09:02:40 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr14:39,033,243
INFO 2026-06-08 09:02:40 MarkDuplicates Tracking 660656 as yet unmatched pairs. 55037 records in RAM.
INFO 2026-06-08 09:02:41 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr14:50,908,931
INFO 2026-06-08 09:02:41 MarkDuplicates Tracking 658053 as yet unmatched pairs. 52413 records in RAM.
INFO 2026-06-08 09:02:43 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr14:58,444,008
INFO 2026-06-08 09:02:43 MarkDuplicates Tracking 655564 as yet unmatched pairs. 49910 records in RAM.
INFO 2026-06-08 09:02:44 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr14:64,220,575
INFO 2026-06-08 09:02:44 MarkDuplicates Tracking 652912 as yet unmatched pairs. 47258 records in RAM.
INFO 2026-06-08 09:02:46 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr14:68,893,676
INFO 2026-06-08 09:02:46 MarkDuplicates Tracking 650615 as yet unmatched pairs. 44947 records in RAM.
INFO 2026-06-08 09:02:48 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr14:73,721,421
INFO 2026-06-08 09:02:48 MarkDuplicates Tracking 647220 as yet unmatched pairs. 41547 records in RAM.
INFO 2026-06-08 09:02:49 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr14:76,763,075
INFO 2026-06-08 09:02:49 MarkDuplicates Tracking 644299 as yet unmatched pairs. 38620 records in RAM.
INFO 2026-06-08 09:02:51 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr14:91,313,483
INFO 2026-06-08 09:02:51 MarkDuplicates Tracking 641481 as yet unmatched pairs. 35792 records in RAM.
INFO 2026-06-08 09:02:52 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr14:94,114,858
INFO 2026-06-08 09:02:52 MarkDuplicates Tracking 639272 as yet unmatched pairs. 33578 records in RAM.
INFO 2026-06-08 09:02:54 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr14:100,292,526
INFO 2026-06-08 09:02:54 MarkDuplicates Tracking 636175 as yet unmatched pairs. 30468 records in RAM.
INFO 2026-06-08 09:02:55 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr14:102,039,037
INFO 2026-06-08 09:02:55 MarkDuplicates Tracking 632985 as yet unmatched pairs. 27276 records in RAM.
INFO 2026-06-08 09:02:57 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr14:103,131,651
INFO 2026-06-08 09:02:57 MarkDuplicates Tracking 630075 as yet unmatched pairs. 24361 records in RAM.
INFO 2026-06-08 09:02:58 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr14:104,780,124
INFO 2026-06-08 09:02:58 MarkDuplicates Tracking 626990 as yet unmatched pairs. 21275 records in RAM.
INFO 2026-06-08 09:03:00 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr14:105,587,145
INFO 2026-06-08 09:03:00 MarkDuplicates Tracking 623526 as yet unmatched pairs. 17811 records in RAM.
INFO 2026-06-08 09:03:01 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,221
INFO 2026-06-08 09:03:01 MarkDuplicates Tracking 623588 as yet unmatched pairs. 17873 records in RAM.
INFO 2026-06-08 09:03:02 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr14:105,644,599
INFO 2026-06-08 09:03:02 MarkDuplicates Tracking 624015 as yet unmatched pairs. 18300 records in RAM.
INFO 2026-06-08 09:03:04 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr14:105,708,116
INFO 2026-06-08 09:03:04 MarkDuplicates Tracking 622961 as yet unmatched pairs. 17244 records in RAM.
INFO 2026-06-08 09:03:05 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,567
INFO 2026-06-08 09:03:05 MarkDuplicates Tracking 630154 as yet unmatched pairs. 24435 records in RAM.
INFO 2026-06-08 09:03:06 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,698
INFO 2026-06-08 09:03:06 MarkDuplicates Tracking 625248 as yet unmatched pairs. 19525 records in RAM.
INFO 2026-06-08 09:03:08 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,040
INFO 2026-06-08 09:03:08 MarkDuplicates Tracking 622590 as yet unmatched pairs. 16865 records in RAM.
INFO 2026-06-08 09:03:10 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,803
INFO 2026-06-08 09:03:10 MarkDuplicates Tracking 624995 as yet unmatched pairs. 19270 records in RAM.
INFO 2026-06-08 09:03:11 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,970
INFO 2026-06-08 09:03:11 MarkDuplicates Tracking 617828 as yet unmatched pairs. 12101 records in RAM.
INFO 2026-06-08 09:03:12 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr14:105,855,645
INFO 2026-06-08 09:03:12 MarkDuplicates Tracking 607157 as yet unmatched pairs. 1428 records in RAM.
INFO 2026-06-08 09:03:14 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 2s. Last read position: chr15:28,124,046
INFO 2026-06-08 09:03:14 MarkDuplicates Tracking 604544 as yet unmatched pairs. 44561 records in RAM.
INFO 2026-06-08 09:03:16 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 2s. Last read position: chr15:32,732,323
INFO 2026-06-08 09:03:16 MarkDuplicates Tracking 603596 as yet unmatched pairs. 43612 records in RAM.
INFO 2026-06-08 09:03:18 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr15:39,589,278
INFO 2026-06-08 09:03:18 MarkDuplicates Tracking 600325 as yet unmatched pairs. 40338 records in RAM.
INFO 2026-06-08 09:03:19 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr15:41,669,258
INFO 2026-06-08 09:03:19 MarkDuplicates Tracking 598284 as yet unmatched pairs. 38297 records in RAM.
INFO 2026-06-08 09:03:20 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr15:43,086,156
INFO 2026-06-08 09:03:20 MarkDuplicates Tracking 594941 as yet unmatched pairs. 34952 records in RAM.
INFO 2026-06-08 09:03:22 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr15:44,566,285
INFO 2026-06-08 09:03:22 MarkDuplicates Tracking 591922 as yet unmatched pairs. 31933 records in RAM.
INFO 2026-06-08 09:03:23 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr15:48,878,612
INFO 2026-06-08 09:03:23 MarkDuplicates Tracking 589260 as yet unmatched pairs. 29268 records in RAM.
INFO 2026-06-08 09:03:25 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr15:56,666,525
INFO 2026-06-08 09:03:25 MarkDuplicates Tracking 586552 as yet unmatched pairs. 26559 records in RAM.
INFO 2026-06-08 09:03:26 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr15:61,973,517
INFO 2026-06-08 09:03:26 MarkDuplicates Tracking 584070 as yet unmatched pairs. 24071 records in RAM.
INFO 2026-06-08 09:03:28 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr15:65,133,034
INFO 2026-06-08 09:03:28 MarkDuplicates Tracking 581221 as yet unmatched pairs. 21210 records in RAM.
INFO 2026-06-08 09:03:30 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr15:70,055,258
INFO 2026-06-08 09:03:30 MarkDuplicates Tracking 578611 as yet unmatched pairs. 18598 records in RAM.
INFO 2026-06-08 09:03:32 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr15:73,994,808
INFO 2026-06-08 09:03:32 MarkDuplicates Tracking 575889 as yet unmatched pairs. 15874 records in RAM.
INFO 2026-06-08 09:03:33 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr15:75,206,386
INFO 2026-06-08 09:03:33 MarkDuplicates Tracking 572584 as yet unmatched pairs. 12567 records in RAM.
INFO 2026-06-08 09:03:35 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr15:78,542,582
INFO 2026-06-08 09:03:35 MarkDuplicates Tracking 570141 as yet unmatched pairs. 10120 records in RAM.
INFO 2026-06-08 09:03:37 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr15:84,511,734
INFO 2026-06-08 09:03:37 MarkDuplicates Tracking 567569 as yet unmatched pairs. 7539 records in RAM.
INFO 2026-06-08 09:03:38 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr15:89,751,092
INFO 2026-06-08 09:03:38 MarkDuplicates Tracking 564789 as yet unmatched pairs. 4759 records in RAM.
INFO 2026-06-08 09:03:40 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr15:92,946,164
INFO 2026-06-08 09:03:40 MarkDuplicates Tracking 562484 as yet unmatched pairs. 2451 records in RAM.
INFO 2026-06-08 09:03:42 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 2s. Last read position: chr16:376,640
INFO 2026-06-08 09:03:42 MarkDuplicates Tracking 559415 as yet unmatched pairs. 81141 records in RAM.
INFO 2026-06-08 09:03:44 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr16:1,678,324
INFO 2026-06-08 09:03:44 MarkDuplicates Tracking 555810 as yet unmatched pairs. 77534 records in RAM.
INFO 2026-06-08 09:03:45 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr16:2,118,757
INFO 2026-06-08 09:03:45 MarkDuplicates Tracking 552569 as yet unmatched pairs. 74293 records in RAM.
INFO 2026-06-08 09:03:47 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr16:2,764,960
INFO 2026-06-08 09:03:47 MarkDuplicates Tracking 549688 as yet unmatched pairs. 71412 records in RAM.
INFO 2026-06-08 09:03:48 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr16:3,290,152
INFO 2026-06-08 09:03:48 MarkDuplicates Tracking 546348 as yet unmatched pairs. 68061 records in RAM.
INFO 2026-06-08 09:03:50 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr16:8,797,930
INFO 2026-06-08 09:03:50 MarkDuplicates Tracking 543344 as yet unmatched pairs. 65056 records in RAM.
INFO 2026-06-08 09:03:51 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr16:14,249,006
INFO 2026-06-08 09:03:51 MarkDuplicates Tracking 541013 as yet unmatched pairs. 62725 records in RAM.
INFO 2026-06-08 09:03:53 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr16:15,036,158
INFO 2026-06-08 09:03:53 MarkDuplicates Tracking 539467 as yet unmatched pairs. 61174 records in RAM.
INFO 2026-06-08 09:03:54 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr16:16,325,440
INFO 2026-06-08 09:03:54 MarkDuplicates Tracking 537828 as yet unmatched pairs. 59528 records in RAM.
INFO 2026-06-08 09:03:55 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr16:18,347,540
INFO 2026-06-08 09:03:55 MarkDuplicates Tracking 537251 as yet unmatched pairs. 58951 records in RAM.
INFO 2026-06-08 09:03:56 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr16:18,809,639
INFO 2026-06-08 09:03:56 MarkDuplicates Tracking 535316 as yet unmatched pairs. 57009 records in RAM.
INFO 2026-06-08 09:03:58 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr16:21,404,893
INFO 2026-06-08 09:03:58 MarkDuplicates Tracking 534880 as yet unmatched pairs. 56568 records in RAM.
INFO 2026-06-08 09:03:59 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr16:21,836,297
INFO 2026-06-08 09:03:59 MarkDuplicates Tracking 532533 as yet unmatched pairs. 54221 records in RAM.
INFO 2026-06-08 09:04:00 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr16:22,483,179
INFO 2026-06-08 09:04:00 MarkDuplicates Tracking 531238 as yet unmatched pairs. 52926 records in RAM.
INFO 2026-06-08 09:04:01 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr16:22,535,983
INFO 2026-06-08 09:04:01 MarkDuplicates Tracking 530748 as yet unmatched pairs. 52436 records in RAM.
INFO 2026-06-08 09:04:03 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr16:28,388,153
INFO 2026-06-08 09:04:03 MarkDuplicates Tracking 528712 as yet unmatched pairs. 50400 records in RAM.
INFO 2026-06-08 09:04:05 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr16:28,985,856
INFO 2026-06-08 09:04:05 MarkDuplicates Tracking 526036 as yet unmatched pairs. 47724 records in RAM.
INFO 2026-06-08 09:04:06 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr16:29,485,287
INFO 2026-06-08 09:04:06 MarkDuplicates Tracking 526069 as yet unmatched pairs. 47757 records in RAM.
INFO 2026-06-08 09:04:08 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 2s. Last read position: chr16:29,859,251
INFO 2026-06-08 09:04:08 MarkDuplicates Tracking 523707 as yet unmatched pairs. 45393 records in RAM.
INFO 2026-06-08 09:04:10 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr16:30,105,007
INFO 2026-06-08 09:04:10 MarkDuplicates Tracking 520160 as yet unmatched pairs. 41846 records in RAM.
INFO 2026-06-08 09:04:11 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr16:30,353,211
INFO 2026-06-08 09:04:11 MarkDuplicates Tracking 519145 as yet unmatched pairs. 40831 records in RAM.
INFO 2026-06-08 09:04:13 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr16:30,737,403
INFO 2026-06-08 09:04:13 MarkDuplicates Tracking 516640 as yet unmatched pairs. 38326 records in RAM.
INFO 2026-06-08 09:04:14 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr16:31,184,259
INFO 2026-06-08 09:04:14 MarkDuplicates Tracking 513298 as yet unmatched pairs. 34982 records in RAM.
INFO 2026-06-08 09:04:16 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr16:47,428,823
INFO 2026-06-08 09:04:16 MarkDuplicates Tracking 510855 as yet unmatched pairs. 32539 records in RAM.
INFO 2026-06-08 09:04:17 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr16:54,008,146
INFO 2026-06-08 09:04:17 MarkDuplicates Tracking 508201 as yet unmatched pairs. 29881 records in RAM.
INFO 2026-06-08 09:04:19 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr16:57,164,001
INFO 2026-06-08 09:04:19 MarkDuplicates Tracking 505277 as yet unmatched pairs. 26957 records in RAM.
INFO 2026-06-08 09:04:20 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr16:66,826,710
INFO 2026-06-08 09:04:20 MarkDuplicates Tracking 502204 as yet unmatched pairs. 23876 records in RAM.
INFO 2026-06-08 09:04:22 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr16:67,880,568
INFO 2026-06-08 09:04:22 MarkDuplicates Tracking 498900 as yet unmatched pairs. 20572 records in RAM.
INFO 2026-06-08 09:04:23 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:69,647,485
INFO 2026-06-08 09:04:23 MarkDuplicates Tracking 496048 as yet unmatched pairs. 17719 records in RAM.
INFO 2026-06-08 09:04:25 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr16:70,698,784
INFO 2026-06-08 09:04:25 MarkDuplicates Tracking 493432 as yet unmatched pairs. 15101 records in RAM.
INFO 2026-06-08 09:04:27 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 2s. Last read position: chr16:75,229,857
INFO 2026-06-08 09:04:27 MarkDuplicates Tracking 490807 as yet unmatched pairs. 12469 records in RAM.
INFO 2026-06-08 09:04:29 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:84,759,405
INFO 2026-06-08 09:04:29 MarkDuplicates Tracking 487699 as yet unmatched pairs. 9360 records in RAM.
INFO 2026-06-08 09:04:30 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr16:88,436,418
INFO 2026-06-08 09:04:30 MarkDuplicates Tracking 484524 as yet unmatched pairs. 6168 records in RAM.
INFO 2026-06-08 09:04:32 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr16:89,279,583
INFO 2026-06-08 09:04:32 MarkDuplicates Tracking 481349 as yet unmatched pairs. 2991 records in RAM.
INFO 2026-06-08 09:04:35 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 2s. Last read position: chr17:800,915
INFO 2026-06-08 09:04:35 MarkDuplicates Tracking 478236 as yet unmatched pairs. 172975 records in RAM.
INFO 2026-06-08 09:04:36 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr17:1,725,949
INFO 2026-06-08 09:04:36 MarkDuplicates Tracking 475002 as yet unmatched pairs. 169741 records in RAM.
INFO 2026-06-08 09:04:38 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr17:3,943,437
INFO 2026-06-08 09:04:38 MarkDuplicates Tracking 471793 as yet unmatched pairs. 166532 records in RAM.
INFO 2026-06-08 09:04:40 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr17:5,022,540
INFO 2026-06-08 09:04:40 MarkDuplicates Tracking 468935 as yet unmatched pairs. 163674 records in RAM.
INFO 2026-06-08 09:04:41 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr17:7,316,217
INFO 2026-06-08 09:04:41 MarkDuplicates Tracking 466234 as yet unmatched pairs. 160973 records in RAM.
INFO 2026-06-08 09:04:43 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr17:7,580,001
INFO 2026-06-08 09:04:43 MarkDuplicates Tracking 464887 as yet unmatched pairs. 159625 records in RAM.
INFO 2026-06-08 09:04:45 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr17:8,484,248
INFO 2026-06-08 09:04:45 MarkDuplicates Tracking 460746 as yet unmatched pairs. 155484 records in RAM.
INFO 2026-06-08 09:04:47 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr17:17,126,821
INFO 2026-06-08 09:04:47 MarkDuplicates Tracking 458308 as yet unmatched pairs. 153045 records in RAM.
INFO 2026-06-08 09:04:48 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr17:18,650,809
INFO 2026-06-08 09:04:48 MarkDuplicates Tracking 454669 as yet unmatched pairs. 149403 records in RAM.
INFO 2026-06-08 09:04:50 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 2s. Last read position: chr17:28,574,209
INFO 2026-06-08 09:04:50 MarkDuplicates Tracking 452191 as yet unmatched pairs. 146923 records in RAM.
INFO 2026-06-08 09:04:52 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr17:29,572,316
INFO 2026-06-08 09:04:52 MarkDuplicates Tracking 449456 as yet unmatched pairs. 144188 records in RAM.
INFO 2026-06-08 09:04:54 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr17:32,494,758
INFO 2026-06-08 09:04:54 MarkDuplicates Tracking 446993 as yet unmatched pairs. 141715 records in RAM.
INFO 2026-06-08 09:04:56 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr17:36,528,165
INFO 2026-06-08 09:04:56 MarkDuplicates Tracking 444365 as yet unmatched pairs. 139082 records in RAM.
INFO 2026-06-08 09:04:57 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr17:38,850,360
INFO 2026-06-08 09:04:57 MarkDuplicates Tracking 443408 as yet unmatched pairs. 138124 records in RAM.
INFO 2026-06-08 09:04:59 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr17:39,710,164
INFO 2026-06-08 09:04:59 MarkDuplicates Tracking 441188 as yet unmatched pairs. 135903 records in RAM.
INFO 2026-06-08 09:05:00 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr17:40,035,579
INFO 2026-06-08 09:05:00 MarkDuplicates Tracking 436375 as yet unmatched pairs. 131090 records in RAM.
INFO 2026-06-08 09:05:02 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr17:41,817,086
INFO 2026-06-08 09:05:02 MarkDuplicates Tracking 433252 as yet unmatched pairs. 127964 records in RAM.
INFO 2026-06-08 09:05:03 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr17:42,673,458
INFO 2026-06-08 09:05:03 MarkDuplicates Tracking 430114 as yet unmatched pairs. 124826 records in RAM.
INFO 2026-06-08 09:05:05 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr17:44,352,013
INFO 2026-06-08 09:05:05 MarkDuplicates Tracking 427578 as yet unmatched pairs. 122277 records in RAM.
INFO 2026-06-08 09:05:07 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr17:46,297,043
INFO 2026-06-08 09:05:07 MarkDuplicates Tracking 424475 as yet unmatched pairs. 119170 records in RAM.
INFO 2026-06-08 09:05:08 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr17:47,981,230
INFO 2026-06-08 09:05:08 MarkDuplicates Tracking 422716 as yet unmatched pairs. 117411 records in RAM.
INFO 2026-06-08 09:05:09 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,473
INFO 2026-06-08 09:05:09 MarkDuplicates Tracking 430579 as yet unmatched pairs. 125268 records in RAM.
INFO 2026-06-08 09:05:11 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,365
INFO 2026-06-08 09:05:11 MarkDuplicates Tracking 426219 as yet unmatched pairs. 120908 records in RAM.
INFO 2026-06-08 09:05:13 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,014
INFO 2026-06-08 09:05:13 MarkDuplicates Tracking 449666 as yet unmatched pairs. 144355 records in RAM.
INFO 2026-06-08 09:05:14 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,886
INFO 2026-06-08 09:05:14 MarkDuplicates Tracking 453275 as yet unmatched pairs. 147964 records in RAM.
INFO 2026-06-08 09:05:16 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,554
INFO 2026-06-08 09:05:16 MarkDuplicates Tracking 424030 as yet unmatched pairs. 118719 records in RAM.
INFO 2026-06-08 09:05:18 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,961
INFO 2026-06-08 09:05:18 MarkDuplicates Tracking 434139 as yet unmatched pairs. 128828 records in RAM.
INFO 2026-06-08 09:05:20 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,439
INFO 2026-06-08 09:05:20 MarkDuplicates Tracking 432590 as yet unmatched pairs. 127278 records in RAM.
INFO 2026-06-08 09:07:23 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:08s. Time for last 1,000,000: 122s. Last read position: chr17:50,189,858
INFO 2026-06-08 09:07:23 MarkDuplicates Tracking 436726 as yet unmatched pairs. 131412 records in RAM.
INFO 2026-06-08 09:07:24 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,095
INFO 2026-06-08 09:07:24 MarkDuplicates Tracking 431903 as yet unmatched pairs. 126589 records in RAM.
INFO 2026-06-08 09:07:26 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,901
INFO 2026-06-08 09:07:26 MarkDuplicates Tracking 424547 as yet unmatched pairs. 119232 records in RAM.
INFO 2026-06-08 09:07:28 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:13s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,474
INFO 2026-06-08 09:07:28 MarkDuplicates Tracking 408667 as yet unmatched pairs. 103352 records in RAM.
INFO 2026-06-08 09:07:29 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,002
INFO 2026-06-08 09:07:29 MarkDuplicates Tracking 417985 as yet unmatched pairs. 112670 records in RAM.
INFO 2026-06-08 09:07:31 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,129
INFO 2026-06-08 09:07:31 MarkDuplicates Tracking 418809 as yet unmatched pairs. 113494 records in RAM.
INFO 2026-06-08 09:07:33 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,586
INFO 2026-06-08 09:07:33 MarkDuplicates Tracking 403683 as yet unmatched pairs. 98367 records in RAM.
INFO 2026-06-08 09:07:35 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,094
INFO 2026-06-08 09:07:35 MarkDuplicates Tracking 400812 as yet unmatched pairs. 95496 records in RAM.
INFO 2026-06-08 09:07:37 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,601
INFO 2026-06-08 09:07:37 MarkDuplicates Tracking 422869 as yet unmatched pairs. 117553 records in RAM.
INFO 2026-06-08 09:07:39 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,185
INFO 2026-06-08 09:07:39 MarkDuplicates Tracking 415196 as yet unmatched pairs. 109880 records in RAM.
INFO 2026-06-08 09:07:41 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,622
INFO 2026-06-08 09:07:41 MarkDuplicates Tracking 398103 as yet unmatched pairs. 92787 records in RAM.
INFO 2026-06-08 09:07:42 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,220
INFO 2026-06-08 09:07:42 MarkDuplicates Tracking 395510 as yet unmatched pairs. 90194 records in RAM.
INFO 2026-06-08 09:07:44 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,446
INFO 2026-06-08 09:07:44 MarkDuplicates Tracking 379783 as yet unmatched pairs. 74467 records in RAM.
INFO 2026-06-08 09:07:46 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,441
INFO 2026-06-08 09:07:46 MarkDuplicates Tracking 368573 as yet unmatched pairs. 63256 records in RAM.
INFO 2026-06-08 09:07:47 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 1s. Last read position: chr17:50,357,141
INFO 2026-06-08 09:07:47 MarkDuplicates Tracking 352848 as yet unmatched pairs. 47531 records in RAM.
INFO 2026-06-08 09:07:49 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 1s. Last read position: chr17:57,401,470
INFO 2026-06-08 09:07:49 MarkDuplicates Tracking 350383 as yet unmatched pairs. 45062 records in RAM.
INFO 2026-06-08 09:07:50 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr17:59,664,794
INFO 2026-06-08 09:07:50 MarkDuplicates Tracking 350550 as yet unmatched pairs. 45226 records in RAM.
INFO 2026-06-08 09:07:52 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 1s. Last read position: chr17:59,945,400
INFO 2026-06-08 09:07:52 MarkDuplicates Tracking 345204 as yet unmatched pairs. 39880 records in RAM.
INFO 2026-06-08 09:07:53 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr17:63,590,250
INFO 2026-06-08 09:07:53 MarkDuplicates Tracking 342151 as yet unmatched pairs. 36826 records in RAM.
INFO 2026-06-08 09:07:55 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 1s. Last read position: chr17:64,804,966
INFO 2026-06-08 09:07:55 MarkDuplicates Tracking 339517 as yet unmatched pairs. 34190 records in RAM.
INFO 2026-06-08 09:07:56 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr17:68,515,505
INFO 2026-06-08 09:07:56 MarkDuplicates Tracking 338188 as yet unmatched pairs. 32856 records in RAM.
INFO 2026-06-08 09:07:58 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr17:74,836,490
INFO 2026-06-08 09:07:58 MarkDuplicates Tracking 334344 as yet unmatched pairs. 29008 records in RAM.
INFO 2026-06-08 09:08:00 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 1s. Last read position: chr17:75,624,587
INFO 2026-06-08 09:08:00 MarkDuplicates Tracking 331347 as yet unmatched pairs. 26011 records in RAM.
INFO 2026-06-08 09:08:01 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr17:76,291,326
INFO 2026-06-08 09:08:01 MarkDuplicates Tracking 327932 as yet unmatched pairs. 22593 records in RAM.
INFO 2026-06-08 09:08:03 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr17:78,174,717
INFO 2026-06-08 09:08:03 MarkDuplicates Tracking 325166 as yet unmatched pairs. 19827 records in RAM.
INFO 2026-06-08 09:08:05 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chr17:80,141,321
INFO 2026-06-08 09:08:05 MarkDuplicates Tracking 321871 as yet unmatched pairs. 16531 records in RAM.
INFO 2026-06-08 09:08:06 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr17:80,372,672
INFO 2026-06-08 09:08:06 MarkDuplicates Tracking 319837 as yet unmatched pairs. 14497 records in RAM.
INFO 2026-06-08 09:08:08 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr17:81,629,759
INFO 2026-06-08 09:08:08 MarkDuplicates Tracking 316169 as yet unmatched pairs. 10829 records in RAM.
INFO 2026-06-08 09:08:11 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 2s. Last read position: chr17:81,983,630
INFO 2026-06-08 09:08:11 MarkDuplicates Tracking 313481 as yet unmatched pairs. 8134 records in RAM.
INFO 2026-06-08 09:08:12 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr17:82,087,116
INFO 2026-06-08 09:08:12 MarkDuplicates Tracking 310328 as yet unmatched pairs. 4980 records in RAM.
INFO 2026-06-08 09:08:14 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr17:82,893,606
INFO 2026-06-08 09:08:14 MarkDuplicates Tracking 306410 as yet unmatched pairs. 1058 records in RAM.
INFO 2026-06-08 09:08:15 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr18:9,258,878
INFO 2026-06-08 09:08:15 MarkDuplicates Tracking 303173 as yet unmatched pairs. 12963 records in RAM.
INFO 2026-06-08 09:08:17 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr18:24,179,786
INFO 2026-06-08 09:08:17 MarkDuplicates Tracking 300462 as yet unmatched pairs. 10250 records in RAM.
INFO 2026-06-08 09:08:18 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr18:44,951,188
INFO 2026-06-08 09:08:18 MarkDuplicates Tracking 297987 as yet unmatched pairs. 7768 records in RAM.
INFO 2026-06-08 09:08:19 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: chr18:55,279,579
INFO 2026-06-08 09:08:19 MarkDuplicates Tracking 295618 as yet unmatched pairs. 5393 records in RAM.
INFO 2026-06-08 09:08:21 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr18:63,318,513
INFO 2026-06-08 09:08:21 MarkDuplicates Tracking 292495 as yet unmatched pairs. 2270 records in RAM.
INFO 2026-06-08 09:08:23 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 2s. Last read position: chr19:804,414
INFO 2026-06-08 09:08:23 MarkDuplicates Tracking 289860 as yet unmatched pairs. 115170 records in RAM.
INFO 2026-06-08 09:08:25 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr19:1,407,678
INFO 2026-06-08 09:08:25 MarkDuplicates Tracking 285900 as yet unmatched pairs. 111210 records in RAM.
INFO 2026-06-08 09:08:26 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr19:2,476,400
INFO 2026-06-08 09:08:26 MarkDuplicates Tracking 282593 as yet unmatched pairs. 107900 records in RAM.
INFO 2026-06-08 09:08:28 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr19:4,793,101
INFO 2026-06-08 09:08:28 MarkDuplicates Tracking 279101 as yet unmatched pairs. 104408 records in RAM.
INFO 2026-06-08 09:08:30 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr19:6,730,176
INFO 2026-06-08 09:08:30 MarkDuplicates Tracking 275976 as yet unmatched pairs. 101282 records in RAM.
INFO 2026-06-08 09:08:31 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr19:9,529,617
INFO 2026-06-08 09:08:31 MarkDuplicates Tracking 272673 as yet unmatched pairs. 97979 records in RAM.
INFO 2026-06-08 09:08:34 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 2s. Last read position: chr19:10,681,069
INFO 2026-06-08 09:08:34 MarkDuplicates Tracking 269471 as yet unmatched pairs. 94777 records in RAM.
INFO 2026-06-08 09:08:36 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 2s. Last read position: chr19:11,514,052
INFO 2026-06-08 09:08:36 MarkDuplicates Tracking 266561 as yet unmatched pairs. 91867 records in RAM.
INFO 2026-06-08 09:08:37 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr19:12,943,805
INFO 2026-06-08 09:08:37 MarkDuplicates Tracking 264039 as yet unmatched pairs. 89345 records in RAM.
INFO 2026-06-08 09:08:38 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr19:14,398,088
INFO 2026-06-08 09:08:38 MarkDuplicates Tracking 260371 as yet unmatched pairs. 85677 records in RAM.
INFO 2026-06-08 09:08:40 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr19:15,244,525
INFO 2026-06-08 09:08:40 MarkDuplicates Tracking 258224 as yet unmatched pairs. 83530 records in RAM.
INFO 2026-06-08 09:08:42 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr19:16,434,458
INFO 2026-06-08 09:08:42 MarkDuplicates Tracking 254066 as yet unmatched pairs. 79372 records in RAM.
INFO 2026-06-08 09:08:43 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr19:17,859,953
INFO 2026-06-08 09:08:43 MarkDuplicates Tracking 250965 as yet unmatched pairs. 76271 records in RAM.
INFO 2026-06-08 09:08:44 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr19:18,777,222
INFO 2026-06-08 09:08:44 MarkDuplicates Tracking 247455 as yet unmatched pairs. 72759 records in RAM.
INFO 2026-06-08 09:08:46 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr19:20,184,464
INFO 2026-06-08 09:08:46 MarkDuplicates Tracking 244072 as yet unmatched pairs. 69376 records in RAM.
INFO 2026-06-08 09:08:48 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr19:34,352,696
INFO 2026-06-08 09:08:48 MarkDuplicates Tracking 241630 as yet unmatched pairs. 66932 records in RAM.
INFO 2026-06-08 09:08:49 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr19:35,279,164
INFO 2026-06-08 09:08:49 MarkDuplicates Tracking 237921 as yet unmatched pairs. 63222 records in RAM.
INFO 2026-06-08 09:08:50 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr19:35,904,493
INFO 2026-06-08 09:08:50 MarkDuplicates Tracking 235823 as yet unmatched pairs. 61124 records in RAM.
INFO 2026-06-08 09:08:52 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr19:38,290,118
INFO 2026-06-08 09:08:52 MarkDuplicates Tracking 232264 as yet unmatched pairs. 57560 records in RAM.
INFO 2026-06-08 09:08:53 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr19:39,333,081
INFO 2026-06-08 09:08:53 MarkDuplicates Tracking 228856 as yet unmatched pairs. 54150 records in RAM.
INFO 2026-06-08 09:08:55 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr19:40,235,079
INFO 2026-06-08 09:08:55 MarkDuplicates Tracking 228307 as yet unmatched pairs. 53599 records in RAM.
INFO 2026-06-08 09:08:57 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr19:41,248,514
INFO 2026-06-08 09:08:57 MarkDuplicates Tracking 222631 as yet unmatched pairs. 47922 records in RAM.
INFO 2026-06-08 09:08:59 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr19:42,090,125
INFO 2026-06-08 09:08:59 MarkDuplicates Tracking 219854 as yet unmatched pairs. 45145 records in RAM.
INFO 2026-06-08 09:09:00 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr19:42,290,864
INFO 2026-06-08 09:09:00 MarkDuplicates Tracking 216580 as yet unmatched pairs. 41870 records in RAM.
INFO 2026-06-08 09:09:02 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr19:43,667,596
INFO 2026-06-08 09:09:02 MarkDuplicates Tracking 213416 as yet unmatched pairs. 38706 records in RAM.
INFO 2026-06-08 09:09:03 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr19:45,064,388
INFO 2026-06-08 09:09:03 MarkDuplicates Tracking 210255 as yet unmatched pairs. 35543 records in RAM.
INFO 2026-06-08 09:09:05 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr19:45,489,376
INFO 2026-06-08 09:09:05 MarkDuplicates Tracking 206307 as yet unmatched pairs. 31595 records in RAM.
INFO 2026-06-08 09:09:06 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr19:46,621,340
INFO 2026-06-08 09:09:06 MarkDuplicates Tracking 203131 as yet unmatched pairs. 28419 records in RAM.
INFO 2026-06-08 09:09:07 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr19:47,701,663
INFO 2026-06-08 09:09:07 MarkDuplicates Tracking 200230 as yet unmatched pairs. 25512 records in RAM.
INFO 2026-06-08 09:09:09 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr19:48,965,471
INFO 2026-06-08 09:09:09 MarkDuplicates Tracking 197244 as yet unmatched pairs. 22526 records in RAM.
INFO 2026-06-08 09:09:10 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr19:49,524,765
INFO 2026-06-08 09:09:10 MarkDuplicates Tracking 194261 as yet unmatched pairs. 19537 records in RAM.
INFO 2026-06-08 09:09:12 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr19:49,862,077
INFO 2026-06-08 09:09:12 MarkDuplicates Tracking 191010 as yet unmatched pairs. 16286 records in RAM.
INFO 2026-06-08 09:09:13 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr19:51,964,892
INFO 2026-06-08 09:09:13 MarkDuplicates Tracking 187677 as yet unmatched pairs. 12952 records in RAM.
INFO 2026-06-08 09:09:15 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr19:54,201,255
INFO 2026-06-08 09:09:15 MarkDuplicates Tracking 185301 as yet unmatched pairs. 10576 records in RAM.
INFO 2026-06-08 09:09:16 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr19:55,236,731
INFO 2026-06-08 09:09:16 MarkDuplicates Tracking 182230 as yet unmatched pairs. 7505 records in RAM.
INFO 2026-06-08 09:09:18 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr19:56,595,414
INFO 2026-06-08 09:09:18 MarkDuplicates Tracking 178877 as yet unmatched pairs. 4151 records in RAM.
INFO 2026-06-08 09:09:19 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr19:58,279,008
INFO 2026-06-08 09:09:19 MarkDuplicates Tracking 176546 as yet unmatched pairs. 1820 records in RAM.
INFO 2026-06-08 09:09:21 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 2s. Last read position: chr20:1,464,330
INFO 2026-06-08 09:09:21 MarkDuplicates Tracking 173420 as yet unmatched pairs. 37516 records in RAM.
INFO 2026-06-08 09:09:23 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr20:3,823,978
INFO 2026-06-08 09:09:23 MarkDuplicates Tracking 170434 as yet unmatched pairs. 34530 records in RAM.
INFO 2026-06-08 09:09:25 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr20:17,659,002
INFO 2026-06-08 09:09:25 MarkDuplicates Tracking 167400 as yet unmatched pairs. 31493 records in RAM.
INFO 2026-06-08 09:09:26 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr20:25,276,685
INFO 2026-06-08 09:09:26 MarkDuplicates Tracking 165113 as yet unmatched pairs. 29206 records in RAM.
INFO 2026-06-08 09:09:28 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr20:34,369,450
INFO 2026-06-08 09:09:28 MarkDuplicates Tracking 162845 as yet unmatched pairs. 26937 records in RAM.
INFO 2026-06-08 09:09:29 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr20:35,842,572
INFO 2026-06-08 09:09:29 MarkDuplicates Tracking 159329 as yet unmatched pairs. 23421 records in RAM.
INFO 2026-06-08 09:09:31 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr20:40,688,519
INFO 2026-06-08 09:09:31 MarkDuplicates Tracking 156508 as yet unmatched pairs. 20596 records in RAM.
INFO 2026-06-08 09:09:32 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr20:45,424,330
INFO 2026-06-08 09:09:32 MarkDuplicates Tracking 153881 as yet unmatched pairs. 17969 records in RAM.
INFO 2026-06-08 09:09:33 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr20:49,063,222
INFO 2026-06-08 09:09:33 MarkDuplicates Tracking 151086 as yet unmatched pairs. 15174 records in RAM.
INFO 2026-06-08 09:09:35 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr20:53,576,200
INFO 2026-06-08 09:09:35 MarkDuplicates Tracking 148680 as yet unmatched pairs. 12768 records in RAM.
INFO 2026-06-08 09:09:37 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr20:58,989,957
INFO 2026-06-08 09:09:37 MarkDuplicates Tracking 144835 as yet unmatched pairs. 8915 records in RAM.
INFO 2026-06-08 09:09:38 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr20:62,391,415
INFO 2026-06-08 09:09:38 MarkDuplicates Tracking 141369 as yet unmatched pairs. 5441 records in RAM.
INFO 2026-06-08 09:09:40 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr20:63,688,362
INFO 2026-06-08 09:09:40 MarkDuplicates Tracking 138240 as yet unmatched pairs. 2311 records in RAM.
INFO 2026-06-08 09:09:41 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr21:5,039,983
INFO 2026-06-08 09:09:41 MarkDuplicates Tracking 135236 as yet unmatched pairs. 36263 records in RAM.
INFO 2026-06-08 09:09:43 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,951
INFO 2026-06-08 09:09:43 MarkDuplicates Tracking 133121 as yet unmatched pairs. 34142 records in RAM.
INFO 2026-06-08 09:09:44 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,190
INFO 2026-06-08 09:09:44 MarkDuplicates Tracking 131604 as yet unmatched pairs. 32620 records in RAM.
INFO 2026-06-08 09:09:45 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr21:29,034,939
INFO 2026-06-08 09:09:45 MarkDuplicates Tracking 129671 as yet unmatched pairs. 30687 records in RAM.
INFO 2026-06-08 09:09:47 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr21:33,341,075
INFO 2026-06-08 09:09:47 MarkDuplicates Tracking 126923 as yet unmatched pairs. 27939 records in RAM.
INFO 2026-06-08 09:09:49 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr21:33,555,049
INFO 2026-06-08 09:09:49 MarkDuplicates Tracking 123923 as yet unmatched pairs. 24939 records in RAM.
INFO 2026-06-08 09:09:51 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr21:36,225,571
INFO 2026-06-08 09:09:51 MarkDuplicates Tracking 120751 as yet unmatched pairs. 21767 records in RAM.
INFO 2026-06-08 09:09:52 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr21:37,493,088
INFO 2026-06-08 09:09:52 MarkDuplicates Tracking 118300 as yet unmatched pairs. 19316 records in RAM.
INFO 2026-06-08 09:09:54 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr21:41,847,116
INFO 2026-06-08 09:09:54 MarkDuplicates Tracking 115099 as yet unmatched pairs. 16115 records in RAM.
INFO 2026-06-08 09:09:55 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr21:44,222,742
INFO 2026-06-08 09:09:55 MarkDuplicates Tracking 112332 as yet unmatched pairs. 13348 records in RAM.
INFO 2026-06-08 09:09:58 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 2s. Last read position: chr21:45,269,844
INFO 2026-06-08 09:09:58 MarkDuplicates Tracking 110164 as yet unmatched pairs. 11180 records in RAM.
INFO 2026-06-08 09:09:59 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr21:45,992,774
INFO 2026-06-08 09:09:59 MarkDuplicates Tracking 107218 as yet unmatched pairs. 8234 records in RAM.
INFO 2026-06-08 09:10:01 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr21:46,122,902
INFO 2026-06-08 09:10:01 MarkDuplicates Tracking 104352 as yet unmatched pairs. 5368 records in RAM.
INFO 2026-06-08 09:10:02 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr21:46,533,586
INFO 2026-06-08 09:10:02 MarkDuplicates Tracking 100090 as yet unmatched pairs. 1106 records in RAM.
INFO 2026-06-08 09:10:04 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr22:20,126,961
INFO 2026-06-08 09:10:04 MarkDuplicates Tracking 96578 as yet unmatched pairs. 39917 records in RAM.
INFO 2026-06-08 09:10:05 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr22:22,899,620
INFO 2026-06-08 09:10:05 MarkDuplicates Tracking 94147 as yet unmatched pairs. 37486 records in RAM.
INFO 2026-06-08 09:10:07 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr22:23,836,831
INFO 2026-06-08 09:10:07 MarkDuplicates Tracking 90472 as yet unmatched pairs. 33811 records in RAM.
INFO 2026-06-08 09:10:08 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr22:28,795,167
INFO 2026-06-08 09:10:08 MarkDuplicates Tracking 91425 as yet unmatched pairs. 34764 records in RAM.
INFO 2026-06-08 09:10:10 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr22:29,299,640
INFO 2026-06-08 09:10:10 MarkDuplicates Tracking 86452 as yet unmatched pairs. 29791 records in RAM.
INFO 2026-06-08 09:10:11 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr22:31,204,549
INFO 2026-06-08 09:10:11 MarkDuplicates Tracking 81703 as yet unmatched pairs. 25042 records in RAM.
INFO 2026-06-08 09:10:13 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr22:36,285,236
INFO 2026-06-08 09:10:13 MarkDuplicates Tracking 79245 as yet unmatched pairs. 22583 records in RAM.
INFO 2026-06-08 09:10:14 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr22:37,128,124
INFO 2026-06-08 09:10:14 MarkDuplicates Tracking 75609 as yet unmatched pairs. 18947 records in RAM.
INFO 2026-06-08 09:10:16 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr22:38,488,073
INFO 2026-06-08 09:10:16 MarkDuplicates Tracking 73479 as yet unmatched pairs. 16817 records in RAM.
INFO 2026-06-08 09:10:18 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 2s. Last read position: chr22:40,409,237
INFO 2026-06-08 09:10:18 MarkDuplicates Tracking 69546 as yet unmatched pairs. 12884 records in RAM.
INFO 2026-06-08 09:10:19 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr22:42,086,229
INFO 2026-06-08 09:10:19 MarkDuplicates Tracking 66854 as yet unmatched pairs. 10192 records in RAM.
INFO 2026-06-08 09:10:21 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr22:45,729,472
INFO 2026-06-08 09:10:21 MarkDuplicates Tracking 63866 as yet unmatched pairs. 7204 records in RAM.
INFO 2026-06-08 09:10:22 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr22:50,290,281
INFO 2026-06-08 09:10:22 MarkDuplicates Tracking 60625 as yet unmatched pairs. 3955 records in RAM.
INFO 2026-06-08 09:10:24 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 2s. Last read position: chrX:1,305,473
INFO 2026-06-08 09:10:24 MarkDuplicates Tracking 56588 as yet unmatched pairs. 48388 records in RAM.
INFO 2026-06-08 09:10:26 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chrX:3,330,322
INFO 2026-06-08 09:10:26 MarkDuplicates Tracking 54536 as yet unmatched pairs. 46336 records in RAM.
INFO 2026-06-08 09:10:27 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chrX:19,360,696
INFO 2026-06-08 09:10:27 MarkDuplicates Tracking 51020 as yet unmatched pairs. 42818 records in RAM.
INFO 2026-06-08 09:10:29 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chrX:40,064,458
INFO 2026-06-08 09:10:29 MarkDuplicates Tracking 48952 as yet unmatched pairs. 40750 records in RAM.
INFO 2026-06-08 09:10:30 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chrX:46,651,188
INFO 2026-06-08 09:10:30 MarkDuplicates Tracking 46151 as yet unmatched pairs. 37949 records in RAM.
INFO 2026-06-08 09:10:32 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chrX:48,901,224
INFO 2026-06-08 09:10:32 MarkDuplicates Tracking 42971 as yet unmatched pairs. 34768 records in RAM.
INFO 2026-06-08 09:10:33 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chrX:51,895,689
INFO 2026-06-08 09:10:33 MarkDuplicates Tracking 40801 as yet unmatched pairs. 32598 records in RAM.
INFO 2026-06-08 09:10:35 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chrX:53,562,841
INFO 2026-06-08 09:10:35 MarkDuplicates Tracking 37948 as yet unmatched pairs. 29745 records in RAM.
INFO 2026-06-08 09:10:37 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 2s. Last read position: chrX:65,529,606
INFO 2026-06-08 09:10:37 MarkDuplicates Tracking 34718 as yet unmatched pairs. 26515 records in RAM.
INFO 2026-06-08 09:10:39 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chrX:71,366,379
INFO 2026-06-08 09:10:39 MarkDuplicates Tracking 32123 as yet unmatched pairs. 23917 records in RAM.
INFO 2026-06-08 09:10:40 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chrX:77,574,266
INFO 2026-06-08 09:10:40 MarkDuplicates Tracking 30370 as yet unmatched pairs. 22164 records in RAM.
INFO 2026-06-08 09:10:43 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 2s. Last read position: chrX:101,349,930
INFO 2026-06-08 09:10:43 MarkDuplicates Tracking 27257 as yet unmatched pairs. 19051 records in RAM.
INFO 2026-06-08 09:10:44 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chrX:115,649,439
INFO 2026-06-08 09:10:44 MarkDuplicates Tracking 24734 as yet unmatched pairs. 16528 records in RAM.
INFO 2026-06-08 09:10:46 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chrX:129,815,304
INFO 2026-06-08 09:10:46 MarkDuplicates Tracking 22216 as yet unmatched pairs. 14010 records in RAM.
INFO 2026-06-08 09:10:48 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chrX:146,619,569
INFO 2026-06-08 09:10:48 MarkDuplicates Tracking 19694 as yet unmatched pairs. 11488 records in RAM.
INFO 2026-06-08 09:10:49 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chrX:153,794,692
INFO 2026-06-08 09:10:49 MarkDuplicates Tracking 17363 as yet unmatched pairs. 9156 records in RAM.
INFO 2026-06-08 09:10:50 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chrX:154,353,929
INFO 2026-06-08 09:10:50 MarkDuplicates Tracking 14205 as yet unmatched pairs. 5998 records in RAM.
INFO 2026-06-08 09:10:52 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chrX:154,398,523
INFO 2026-06-08 09:10:52 MarkDuplicates Tracking 12229 as yet unmatched pairs. 4022 records in RAM.
INFO 2026-06-08 09:10:53 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chrY:25,391,261
INFO 2026-06-08 09:10:53 MarkDuplicates Tracking 8162 as yet unmatched pairs. 4 records in RAM.
INFO 2026-06-08 09:10:55 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,147
INFO 2026-06-08 09:10:55 MarkDuplicates Tracking 6002 as yet unmatched pairs. 118 records in RAM.
INFO 2026-06-08 09:10:56 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,674
INFO 2026-06-08 09:10:56 MarkDuplicates Tracking 417 as yet unmatched pairs. 359 records in RAM.
INFO 2026-06-08 09:10:56 MarkDuplicates Read 636601127 records. 0 pairs never matched.
INFO 2026-06-08 09:11:43 MarkDuplicates After buildSortedReadEndLists freeMemory: 204138040; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:11:43 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:11:46 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:11:46 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:11:59 OpticalDuplicateFinder Large duplicate set. size = 2313
INFO 2026-06-08 09:11:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,756
INFO 2026-06-08 09:11:59 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,537
INFO 2026-06-08 09:11:59 OpticalDuplicateFinder Large duplicate set. size = 1158
INFO 2026-06-08 09:11:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,598
INFO 2026-06-08 09:11:59 OpticalDuplicateFinder Large duplicate set. size = 1177
INFO 2026-06-08 09:11:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,132
INFO 2026-06-08 09:11:59 OpticalDuplicateFinder Large duplicate set. size = 1045
INFO 2026-06-08 09:11:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,118
INFO 2026-06-08 09:11:59 OpticalDuplicateFinder Large duplicate set. size = 1586
INFO 2026-06-08 09:11:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,491
INFO 2026-06-08 09:11:59 OpticalDuplicateFinder Large duplicate set. size = 1034
INFO 2026-06-08 09:11:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,873
INFO 2026-06-08 09:11:59 OpticalDuplicateFinder Large duplicate set. size = 1410
INFO 2026-06-08 09:11:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,447
INFO 2026-06-08 09:12:00 OpticalDuplicateFinder Large duplicate set. size = 1067
INFO 2026-06-08 09:12:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,332
INFO 2026-06-08 09:12:00 OpticalDuplicateFinder Large duplicate set. size = 1019
INFO 2026-06-08 09:12:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,891
INFO 2026-06-08 09:12:01 OpticalDuplicateFinder Large duplicate set. size = 1070
INFO 2026-06-08 09:12:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,467
INFO 2026-06-08 09:12:01 OpticalDuplicateFinder Large duplicate set. size = 1597
INFO 2026-06-08 09:12:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,989
INFO 2026-06-08 09:12:01 OpticalDuplicateFinder Large duplicate set. size = 1306
INFO 2026-06-08 09:12:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,919
INFO 2026-06-08 09:12:01 OpticalDuplicateFinder Large duplicate set. size = 1185
INFO 2026-06-08 09:12:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,925
INFO 2026-06-08 09:12:10 OpticalDuplicateFinder Large duplicate set. size = 1316
INFO 2026-06-08 09:12:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,250
INFO 2026-06-08 09:12:10 OpticalDuplicateFinder Large duplicate set. size = 1058
INFO 2026-06-08 09:12:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,536
INFO 2026-06-08 09:12:10 OpticalDuplicateFinder Large duplicate set. size = 1481
INFO 2026-06-08 09:12:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,104
INFO 2026-06-08 09:12:10 OpticalDuplicateFinder Large duplicate set. size = 1821
INFO 2026-06-08 09:12:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,155
INFO 2026-06-08 09:12:10 OpticalDuplicateFinder Large duplicate set. size = 2021
INFO 2026-06-08 09:12:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,116
INFO 2026-06-08 09:12:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,057
INFO 2026-06-08 09:12:10 OpticalDuplicateFinder Large duplicate set. size = 3669
INFO 2026-06-08 09:12:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,195
INFO 2026-06-08 09:12:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,175
INFO 2026-06-08 09:12:10 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,527
INFO 2026-06-08 09:12:10 OpticalDuplicateFinder Large duplicate set. size = 1095
INFO 2026-06-08 09:12:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,047
INFO 2026-06-08 09:12:10 OpticalDuplicateFinder Large duplicate set. size = 1253
INFO 2026-06-08 09:12:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,173
INFO 2026-06-08 09:12:10 OpticalDuplicateFinder Large duplicate set. size = 1396
INFO 2026-06-08 09:12:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,537
INFO 2026-06-08 09:12:10 OpticalDuplicateFinder Large duplicate set. size = 1300
INFO 2026-06-08 09:12:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,387
INFO 2026-06-08 09:12:15 OpticalDuplicateFinder Large duplicate set. size = 1420
INFO 2026-06-08 09:12:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,994
INFO 2026-06-08 09:12:22 OpticalDuplicateFinder Large duplicate set. size = 1824
INFO 2026-06-08 09:12:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,670
INFO 2026-06-08 09:12:32 OpticalDuplicateFinder Large duplicate set. size = 1169
INFO 2026-06-08 09:12:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,623
INFO 2026-06-08 09:12:32 OpticalDuplicateFinder Large duplicate set. size = 1568
INFO 2026-06-08 09:12:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,167
INFO 2026-06-08 09:12:32 OpticalDuplicateFinder Large duplicate set. size = 1144
INFO 2026-06-08 09:12:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,984
INFO 2026-06-08 09:12:32 OpticalDuplicateFinder Large duplicate set. size = 1463
INFO 2026-06-08 09:12:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,193
INFO 2026-06-08 09:12:32 OpticalDuplicateFinder Large duplicate set. size = 1046
INFO 2026-06-08 09:12:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,199
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1321
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,982
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1596
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,220
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1419
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,671
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1044
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,566
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 2015
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,702
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,157
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1055
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,812
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 2029
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,298
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,835
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1293
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,665
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1317
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,503
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1067
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,676
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1101
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,470
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1113
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,773
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1523
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,142
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1589
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,923
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1222
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,806
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1335
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,246
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1266
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,215
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1215
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,793
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1164
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,728
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1138
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,991
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1415
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,690
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1498
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,083
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1356
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,398
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1924
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,313
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1160
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,591
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1075
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,476
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1121
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,268
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1135
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,326
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1850
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,328
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1195
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,078
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1625
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,692
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1032
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,819
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 2301
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,294
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,962
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1361
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,403
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 2124
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,962
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,043
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1032
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,119
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder Large duplicate set. size = 1039
INFO 2026-06-08 09:12:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,290
INFO 2026-06-08 09:12:38 OpticalDuplicateFinder Large duplicate set. size = 1069
INFO 2026-06-08 09:12:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,273
INFO 2026-06-08 09:12:38 OpticalDuplicateFinder Large duplicate set. size = 1204
INFO 2026-06-08 09:12:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,159
INFO 2026-06-08 09:12:38 OpticalDuplicateFinder Large duplicate set. size = 1080
INFO 2026-06-08 09:12:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,908
INFO 2026-06-08 09:12:38 OpticalDuplicateFinder Large duplicate set. size = 1072
INFO 2026-06-08 09:12:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,879
INFO 2026-06-08 09:12:38 OpticalDuplicateFinder Large duplicate set. size = 1088
INFO 2026-06-08 09:12:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,418
INFO 2026-06-08 09:12:38 OpticalDuplicateFinder Large duplicate set. size = 1207
INFO 2026-06-08 09:12:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,405
INFO 2026-06-08 09:12:38 OpticalDuplicateFinder Large duplicate set. size = 1216
INFO 2026-06-08 09:12:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,578
INFO 2026-06-08 09:12:38 OpticalDuplicateFinder Large duplicate set. size = 1102
INFO 2026-06-08 09:12:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,118
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder Large duplicate set. size = 1442
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,441
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder Large duplicate set. size = 1039
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,144
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder Large duplicate set. size = 2017
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,969
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,857
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder Large duplicate set. size = 1656
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,149
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder Large duplicate set. size = 1144
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,291
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder Large duplicate set. size = 1678
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,336
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder Large duplicate set. size = 1025
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,600
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder Large duplicate set. size = 1105
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,045
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder Large duplicate set. size = 1018
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,366
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder Large duplicate set. size = 1096
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,775
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder Large duplicate set. size = 2402
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,832
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,348
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder Large duplicate set. size = 1056
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,485
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder Large duplicate set. size = 1096
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,147
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder Large duplicate set. size = 1129
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,524
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder Large duplicate set. size = 1218
INFO 2026-06-08 09:13:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,867
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1029
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,937
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1732
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,380
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1092
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,880
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1060
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,956
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1315
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,419
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1408
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,432
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1299
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,100
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1565
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,565
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1052
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,139
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1327
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,510
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1136
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,848
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1356
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,436
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1550
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,430
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1111
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,291
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1327
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,774
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1051
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,901
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1548
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,755
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1122
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,001
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1010
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,442
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1344
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,035
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1970
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,937
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1095
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,505
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1324
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,400
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1605
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,469
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1378
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,032
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1244
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,745
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder Large duplicate set. size = 1062
INFO 2026-06-08 09:13:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,660
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder Large duplicate set. size = 1260
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,947
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder Large duplicate set. size = 1147
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,268
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder Large duplicate set. size = 1333
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,100
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder Large duplicate set. size = 1103
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,623
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder Large duplicate set. size = 1754
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,971
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder Large duplicate set. size = 1079
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,279
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder Large duplicate set. size = 1378
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,182
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder Large duplicate set. size = 1135
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,974
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder Large duplicate set. size = 1051
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,244
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder Large duplicate set. size = 1438
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,126
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder Large duplicate set. size = 1396
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,709
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder Large duplicate set. size = 1678
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,087
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder Large duplicate set. size = 1263
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,761
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder Large duplicate set. size = 1705
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,251
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder Large duplicate set. size = 2350
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,105
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,693
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder Large duplicate set. size = 1168
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,416
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder Large duplicate set. size = 1678
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,319
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder Large duplicate set. size = 1689
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,100
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder Large duplicate set. size = 1047
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,299
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder Large duplicate set. size = 1653
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,281
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder Large duplicate set. size = 1471
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,415
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder Large duplicate set. size = 1631
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,292
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder Large duplicate set. size = 1013
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,025
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder Large duplicate set. size = 2068
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,299
INFO 2026-06-08 09:13:03 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,262
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder Large duplicate set. size = 1020
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,286
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder Large duplicate set. size = 1986
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,721
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder Large duplicate set. size = 1028
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,849
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder Large duplicate set. size = 1065
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,718
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder Large duplicate set. size = 1147
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,324
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder Large duplicate set. size = 1195
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,127
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder Large duplicate set. size = 1138
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,967
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder Large duplicate set. size = 1722
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,743
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder Large duplicate set. size = 2045
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,456
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,723
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder Large duplicate set. size = 1006
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,339
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder Large duplicate set. size = 2344
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,619
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,265
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder Large duplicate set. size = 1102
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,049
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder Large duplicate set. size = 2745
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,352
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,281
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder Large duplicate set. size = 1070
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,892
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder Large duplicate set. size = 1185
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,326
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder Large duplicate set. size = 1454
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,053
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder Large duplicate set. size = 1450
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,755
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder Large duplicate set. size = 1235
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,606
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder Large duplicate set. size = 1427
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,196
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder Large duplicate set. size = 1060
INFO 2026-06-08 09:13:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,867
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1273
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,094
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1008
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,888
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1203
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,984
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1767
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,462
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1647
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,570
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1454
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,983
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1748
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,496
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1065
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,381
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1021
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,176
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1244
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,793
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 2224
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,763
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,916
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1737
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,063
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1800
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,233
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1576
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,720
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 2222
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,527
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,111
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 3452
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,926
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,820
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,082
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1164
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,367
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1560
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,039
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1409
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,184
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 3568
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,540
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,537
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,156
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1594
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,461
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 2866
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,593
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,012
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 3529
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,101
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,351
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,026
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 2270
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,973
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,071
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1191
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,188
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 2248
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,219
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,777
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1199
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,456
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1126
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,523
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1122
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,633
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1076
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,109
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1242
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,154
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1018
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,595
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1343
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,703
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 2036
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,400
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,225
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 3330
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,863
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,140
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,773
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1151
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,460
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1082
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,156
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1571
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,445
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1966
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,040
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1636
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,026
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1548
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,419
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1200
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,774
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1234
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,977
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1264
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,523
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1710
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,419
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1070
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,198
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 3491
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,504
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,181
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,128
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1527
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,659
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1412
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,529
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 2071
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,292
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,977
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1747
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,880
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1909
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,081
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1090
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,301
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1232
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,874
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1672
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,589
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 2372
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,487
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,521
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder Large duplicate set. size = 1208
INFO 2026-06-08 09:13:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,399
INFO 2026-06-08 09:13:06 OpticalDuplicateFinder Large duplicate set. size = 1021
INFO 2026-06-08 09:13:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,507
INFO 2026-06-08 09:13:06 OpticalDuplicateFinder Large duplicate set. size = 1018
INFO 2026-06-08 09:13:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,371
INFO 2026-06-08 09:13:06 OpticalDuplicateFinder Large duplicate set. size = 2287
INFO 2026-06-08 09:13:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,432
INFO 2026-06-08 09:13:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,455
INFO 2026-06-08 09:13:06 OpticalDuplicateFinder Large duplicate set. size = 1333
INFO 2026-06-08 09:13:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,519
INFO 2026-06-08 09:13:06 OpticalDuplicateFinder Large duplicate set. size = 1371
INFO 2026-06-08 09:13:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,247
INFO 2026-06-08 09:13:06 OpticalDuplicateFinder Large duplicate set. size = 1640
INFO 2026-06-08 09:13:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,502
INFO 2026-06-08 09:13:06 OpticalDuplicateFinder Large duplicate set. size = 1320
INFO 2026-06-08 09:13:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,862
INFO 2026-06-08 09:13:06 OpticalDuplicateFinder Large duplicate set. size = 1230
INFO 2026-06-08 09:13:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,729
INFO 2026-06-08 09:13:06 OpticalDuplicateFinder Large duplicate set. size = 1006
INFO 2026-06-08 09:13:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,637
INFO 2026-06-08 09:13:06 OpticalDuplicateFinder Large duplicate set. size = 1153
INFO 2026-06-08 09:13:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,144
INFO 2026-06-08 09:13:06 OpticalDuplicateFinder Large duplicate set. size = 1031
INFO 2026-06-08 09:13:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,708
INFO 2026-06-08 09:13:06 OpticalDuplicateFinder Large duplicate set. size = 1840
INFO 2026-06-08 09:13:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,616
INFO 2026-06-08 09:13:24 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:13:24 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:14:34 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:14:40 MarkDuplicates After generateDuplicateIndexes freeMemory: 203854696; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:14:40 MarkDuplicates Marking 372364386 records as duplicates.
INFO 2026-06-08 09:14:40 MarkDuplicates Found 19234109 optical duplicate clusters.
INFO 2026-06-08 09:14:40 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:14:57 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:22,660,900
INFO 2026-06-08 09:15:14 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:34s. Time for last 10,000,000: 16s. Last read position: chr1:51,290,514
INFO 2026-06-08 09:15:32 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:51s. Time for last 10,000,000: 17s. Last read position: chr1:120,494,385
INFO 2026-06-08 09:15:49 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:09s. Time for last 10,000,000: 17s. Last read position: chr1:153,968,615
INFO 2026-06-08 09:16:06 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:26s. Time for last 10,000,000: 17s. Last read position: chr1:161,542,496
INFO 2026-06-08 09:16:24 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:43s. Time for last 10,000,000: 17s. Last read position: chr1:222,563,272
INFO 2026-06-08 09:16:42 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:01s. Time for last 10,000,000: 17s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:16:59 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:18s. Time for last 10,000,000: 17s. Last read position: chr2:73,453,318
INFO 2026-06-08 09:17:16 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:36s. Time for last 10,000,000: 17s. Last read position: chr2:127,639,368
INFO 2026-06-08 09:17:33 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:53s. Time for last 10,000,000: 17s. Last read position: chr2:205,683,300
INFO 2026-06-08 09:17:50 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:10s. Time for last 10,000,000: 16s. Last read position: chr2:215,414,862
INFO 2026-06-08 09:18:07 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:27s. Time for last 10,000,000: 16s. Last read position: chr3:8,948,528
INFO 2026-06-08 09:18:24 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:44s. Time for last 10,000,000: 17s. Last read position: chr3:52,504,101
INFO 2026-06-08 09:18:42 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:01s. Time for last 10,000,000: 17s. Last read position: chr3:131,016,287
INFO 2026-06-08 09:18:59 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:18s. Time for last 10,000,000: 17s. Last read position: chr4:664,899
INFO 2026-06-08 09:19:16 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:36s. Time for last 10,000,000: 17s. Last read position: chr4:127,643,776
INFO 2026-06-08 09:19:34 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:53s. Time for last 10,000,000: 17s. Last read position: chr5:80,656,491
INFO 2026-06-08 09:19:51 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:10s. Time for last 10,000,000: 17s. Last read position: chr5:150,403,145
INFO 2026-06-08 09:20:07 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:27s. Time for last 10,000,000: 16s. Last read position: chr6:7,581,362
INFO 2026-06-08 09:20:24 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:44s. Time for last 10,000,000: 16s. Last read position: chr6:33,201,228
INFO 2026-06-08 09:20:42 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:01s. Time for last 10,000,000: 17s. Last read position: chr6:105,397,869
INFO 2026-06-08 09:20:59 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:18s. Time for last 10,000,000: 17s. Last read position: chr7:5,313,585
INFO 2026-06-08 09:21:15 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:35s. Time for last 10,000,000: 16s. Last read position: chr7:74,338,458
INFO 2026-06-08 09:21:32 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:52s. Time for last 10,000,000: 17s. Last read position: chr7:101,216,529
INFO 2026-06-08 09:21:50 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:09s. Time for last 10,000,000: 17s. Last read position: chr7:149,021,109
INFO 2026-06-08 09:22:07 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:26s. Time for last 10,000,000: 17s. Last read position: chr8:58,570,921
INFO 2026-06-08 09:22:24 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:44s. Time for last 10,000,000: 17s. Last read position: chr8:143,858,200
INFO 2026-06-08 09:22:41 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:01s. Time for last 10,000,000: 17s. Last read position: chr9:33,963,725
INFO 2026-06-08 09:22:58 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:18s. Time for last 10,000,000: 17s. Last read position: chr9:127,843,141
INFO 2026-06-08 09:23:16 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:35s. Time for last 10,000,000: 17s. Last read position: chr10:29,523,863
INFO 2026-06-08 09:23:33 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:52s. Time for last 10,000,000: 17s. Last read position: chr10:78,037,199
INFO 2026-06-08 09:23:50 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:09s. Time for last 10,000,000: 17s. Last read position: chr10:122,514,201
INFO 2026-06-08 09:24:07 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:27s. Time for last 10,000,000: 17s. Last read position: chr11:57,614,374
INFO 2026-06-08 09:24:24 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:44s. Time for last 10,000,000: 17s. Last read position: chr11:65,856,069
INFO 2026-06-08 09:24:41 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:01s. Time for last 10,000,000: 17s. Last read position: chr11:110,462,381
INFO 2026-06-08 09:24:59 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:18s. Time for last 10,000,000: 17s. Last read position: chr12:9,077,779
INFO 2026-06-08 09:25:16 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:35s. Time for last 10,000,000: 17s. Last read position: chr12:54,645,613
INFO 2026-06-08 09:25:33 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:52s. Time for last 10,000,000: 17s. Last read position: chr12:103,938,443
INFO 2026-06-08 09:25:50 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:10s. Time for last 10,000,000: 17s. Last read position: chr13:21,413,752
INFO 2026-06-08 09:26:08 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:27s. Time for last 10,000,000: 17s. Last read position: chr14:31,150,092
INFO 2026-06-08 09:26:25 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:44s. Time for last 10,000,000: 17s. Last read position: chr14:100,292,526
INFO 2026-06-08 09:26:42 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:01s. Time for last 10,000,000: 16s. Last read position: chr14:105,742,040
INFO 2026-06-08 09:26:59 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:18s. Time for last 10,000,000: 17s. Last read position: chr15:48,878,612
INFO 2026-06-08 09:27:16 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:36s. Time for last 10,000,000: 17s. Last read position: chr15:92,946,164
INFO 2026-06-08 09:27:33 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:52s. Time for last 10,000,000: 16s. Last read position: chr16:18,347,540
INFO 2026-06-08 09:27:50 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:10s. Time for last 10,000,000: 17s. Last read position: chr16:30,105,007
INFO 2026-06-08 09:28:07 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:27s. Time for last 10,000,000: 17s. Last read position: chr16:70,698,784
INFO 2026-06-08 09:28:24 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:44s. Time for last 10,000,000: 17s. Last read position: chr17:7,580,001
INFO 2026-06-08 09:28:41 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:01s. Time for last 10,000,000: 17s. Last read position: chr17:40,035,579
INFO 2026-06-08 09:28:58 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:17s. Time for last 10,000,000: 16s. Last read position: chr17:50,188,554
INFO 2026-06-08 09:29:16 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:35s. Time for last 10,000,000: 17s. Last read position: chr17:50,195,094
INFO 2026-06-08 09:29:32 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:52s. Time for last 10,000,000: 16s. Last read position: chr17:59,945,400
INFO 2026-06-08 09:29:49 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:09s. Time for last 10,000,000: 16s. Last read position: chr17:81,629,759
INFO 2026-06-08 09:30:06 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:26s. Time for last 10,000,000: 17s. Last read position: chr19:1,407,678
INFO 2026-06-08 09:30:23 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:43s. Time for last 10,000,000: 17s. Last read position: chr19:16,434,458
INFO 2026-06-08 09:30:40 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:00s. Time for last 10,000,000: 16s. Last read position: chr19:41,248,514
INFO 2026-06-08 09:30:57 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:17s. Time for last 10,000,000: 16s. Last read position: chr19:49,862,077
INFO 2026-06-08 09:31:14 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:34s. Time for last 10,000,000: 17s. Last read position: chr20:34,369,450
INFO 2026-06-08 09:31:31 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:51s. Time for last 10,000,000: 16s. Last read position: chr21:8,258,951
INFO 2026-06-08 09:31:48 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:07s. Time for last 10,000,000: 16s. Last read position: chr21:45,992,774
INFO 2026-06-08 09:32:05 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:25s. Time for last 10,000,000: 17s. Last read position: chr22:37,128,124
INFO 2026-06-08 09:32:22 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:42s. Time for last 10,000,000: 17s. Last read position: chrX:46,651,188
INFO 2026-06-08 09:32:40 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:17:59s. Time for last 10,000,000: 17s. Last read position: chrX:146,619,569
INFO 2026-06-08 09:32:58 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:18:17s. Time for last 10,000,000: 18s. Last read position: */*
INFO 2026-06-08 09:32:59 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:32:59 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:32:59 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:33:00 MarkDuplicates Before output close freeMemory: 203819680; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:33:00 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:33:00 MarkDuplicates After output close freeMemory: 104059040; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:33:00 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 42.78 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory