Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/3ea89eb05ae7c481f4236a9fc82127/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/3ea89eb05ae7c481f4236a9fc82127/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/f05e907b3f3300c9f4a220cba61125/aih-tih-sc-c63171-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-c63171-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-c63171-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-c63171-R1_B23WHYVLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:46:10.561 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:46:10 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-c63171-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-c63171-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-c63171-R1_B23WHYVLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:46:10 GMT 2026] Executing as ?@nf-3f3ea89eb05ae7c481f4236a9fc82127-b7954-4wmwg on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:46:10 MarkDuplicates Start of doWork freeMemory: 105829704; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:46:10 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:46:10 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:46:14 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,339,318
INFO 2026-06-08 08:46:14 MarkDuplicates Tracking 3307 as yet unmatched pairs. 421 records in RAM.
INFO 2026-06-08 08:46:16 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:2,303,996
INFO 2026-06-08 08:46:16 MarkDuplicates Tracking 6067 as yet unmatched pairs. 194 records in RAM.
INFO 2026-06-08 08:46:18 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:7,808,962
INFO 2026-06-08 08:46:18 MarkDuplicates Tracking 9011 as yet unmatched pairs. 11 records in RAM.
INFO 2026-06-08 08:46:20 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 1s. Last read position: chr1:10,296,591
INFO 2026-06-08 08:46:20 MarkDuplicates Tracking 11900 as yet unmatched pairs. 97 records in RAM.
INFO 2026-06-08 08:46:22 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:12,029,780
INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 14666 as yet unmatched pairs. 104 records in RAM.
INFO 2026-06-08 08:46:24 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:15,934,475
INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 17349 as yet unmatched pairs. 129 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:17,656,680
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 20126 as yet unmatched pairs. 346 records in RAM.
INFO 2026-06-08 08:46:28 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 2s. Last read position: chr1:19,978,397
INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 24021 as yet unmatched pairs. 1668 records in RAM.
INFO 2026-06-08 08:46:30 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:21,839,438
INFO 2026-06-08 08:46:30 MarkDuplicates Tracking 25430 as yet unmatched pairs. 428 records in RAM.
INFO 2026-06-08 08:46:32 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:22,638,915
INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 28612 as yet unmatched pairs. 605 records in RAM.
INFO 2026-06-08 08:46:34 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:23,751,770
INFO 2026-06-08 08:46:34 MarkDuplicates Tracking 30767 as yet unmatched pairs. 83 records in RAM.
INFO 2026-06-08 08:46:36 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:26,318,053
INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 33369 as yet unmatched pairs. 149 records in RAM.
INFO 2026-06-08 08:46:38 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:27,550,831
INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 35922 as yet unmatched pairs. 115 records in RAM.
INFO 2026-06-08 08:46:39 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:31,413,260
INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 38729 as yet unmatched pairs. 323 records in RAM.
INFO 2026-06-08 08:46:41 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:32,770,284
INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 41690 as yet unmatched pairs. 490 records in RAM.
INFO 2026-06-08 08:46:42 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:35,506,898
INFO 2026-06-08 08:46:42 MarkDuplicates Tracking 44188 as yet unmatched pairs. 190 records in RAM.
INFO 2026-06-08 08:46:44 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:39,028,907
INFO 2026-06-08 08:46:44 MarkDuplicates Tracking 46790 as yet unmatched pairs. 121 records in RAM.
INFO 2026-06-08 08:46:46 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:40,066,298
INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 49333 as yet unmatched pairs. 201 records in RAM.
INFO 2026-06-08 08:46:49 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 2s. Last read position: chr1:42,943,296
INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 52492 as yet unmatched pairs. 609 records in RAM.
INFO 2026-06-08 08:46:50 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:44,636,118
INFO 2026-06-08 08:46:50 MarkDuplicates Tracking 54975 as yet unmatched pairs. 170 records in RAM.
INFO 2026-06-08 08:46:52 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:46,256,300
INFO 2026-06-08 08:46:52 MarkDuplicates Tracking 57668 as yet unmatched pairs. 115 records in RAM.
INFO 2026-06-08 08:46:54 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 2s. Last read position: chr1:52,525,878
INFO 2026-06-08 08:46:54 MarkDuplicates Tracking 60273 as yet unmatched pairs. 112 records in RAM.
INFO 2026-06-08 08:46:56 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:59,339,956
INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 62778 as yet unmatched pairs. 71 records in RAM.
INFO 2026-06-08 08:46:57 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:68,481,547
INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 65309 as yet unmatched pairs. 133 records in RAM.
INFO 2026-06-08 08:47:00 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 2s. Last read position: chr1:86,579,485
INFO 2026-06-08 08:47:00 MarkDuplicates Tracking 67941 as yet unmatched pairs. 343 records in RAM.
INFO 2026-06-08 08:47:02 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 2s. Last read position: chr1:93,873,124
INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 70137 as yet unmatched pairs. 129 records in RAM.
INFO 2026-06-08 08:47:04 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:108,943,959
INFO 2026-06-08 08:47:04 MarkDuplicates Tracking 72698 as yet unmatched pairs. 233 records in RAM.
INFO 2026-06-08 08:47:05 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:111,131,439
INFO 2026-06-08 08:47:05 MarkDuplicates Tracking 75144 as yet unmatched pairs. 136 records in RAM.
INFO 2026-06-08 08:47:07 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:113,973,154
INFO 2026-06-08 08:47:07 MarkDuplicates Tracking 77744 as yet unmatched pairs. 227 records in RAM.
INFO 2026-06-08 08:47:08 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:116,401,233
INFO 2026-06-08 08:47:08 MarkDuplicates Tracking 81998 as yet unmatched pairs. 2008 records in RAM.
INFO 2026-06-08 08:47:10 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:119,967,480
INFO 2026-06-08 08:47:10 MarkDuplicates Tracking 83184 as yet unmatched pairs. 476 records in RAM.
INFO 2026-06-08 08:47:11 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:145,630,644
INFO 2026-06-08 08:47:11 MarkDuplicates Tracking 84014 as yet unmatched pairs. 87 records in RAM.
INFO 2026-06-08 08:47:13 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:148,109,317
INFO 2026-06-08 08:47:13 MarkDuplicates Tracking 85327 as yet unmatched pairs. 89 records in RAM.
INFO 2026-06-08 08:47:14 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:149,488,141
INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 86214 as yet unmatched pairs. 118 records in RAM.
INFO 2026-06-08 08:47:16 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:149,929,654
INFO 2026-06-08 08:47:16 MarkDuplicates Tracking 87920 as yet unmatched pairs. 127 records in RAM.
INFO 2026-06-08 08:47:17 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:151,053,247
INFO 2026-06-08 08:47:17 MarkDuplicates Tracking 91000 as yet unmatched pairs. 496 records in RAM.
INFO 2026-06-08 08:47:20 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 2s. Last read position: chr1:153,534,788
INFO 2026-06-08 08:47:20 MarkDuplicates Tracking 94211 as yet unmatched pairs. 1211 records in RAM.
INFO 2026-06-08 08:47:22 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:154,170,456
INFO 2026-06-08 08:47:22 MarkDuplicates Tracking 102111 as yet unmatched pairs. 6522 records in RAM.
INFO 2026-06-08 08:47:23 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:154,601,876
INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 99347 as yet unmatched pairs. 1380 records in RAM.
INFO 2026-06-08 08:47:25 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:155,248,117
INFO 2026-06-08 08:47:25 MarkDuplicates Tracking 100861 as yet unmatched pairs. 175 records in RAM.
INFO 2026-06-08 08:47:27 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:156,015,003
INFO 2026-06-08 08:47:27 MarkDuplicates Tracking 103776 as yet unmatched pairs. 797 records in RAM.
INFO 2026-06-08 08:47:28 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:156,500,581
INFO 2026-06-08 08:47:28 MarkDuplicates Tracking 106115 as yet unmatched pairs. 20 records in RAM.
INFO 2026-06-08 08:47:30 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 2s. Last read position: chr1:160,240,016
INFO 2026-06-08 08:47:30 MarkDuplicates Tracking 108862 as yet unmatched pairs. 116 records in RAM.
INFO 2026-06-08 08:47:32 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:161,544,851
INFO 2026-06-08 08:47:32 MarkDuplicates Tracking 111683 as yet unmatched pairs. 413 records in RAM.
INFO 2026-06-08 08:47:33 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:169,111,370
INFO 2026-06-08 08:47:33 MarkDuplicates Tracking 116183 as yet unmatched pairs. 2586 records in RAM.
INFO 2026-06-08 08:47:36 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 2s. Last read position: chr1:171,568,297
INFO 2026-06-08 08:47:36 MarkDuplicates Tracking 116179 as yet unmatched pairs. 194 records in RAM.
INFO 2026-06-08 08:47:38 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:180,194,232
INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 119061 as yet unmatched pairs. 551 records in RAM.
INFO 2026-06-08 08:47:39 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:185,300,013
INFO 2026-06-08 08:47:39 MarkDuplicates Tracking 122577 as yet unmatched pairs. 1390 records in RAM.
INFO 2026-06-08 08:47:41 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:193,069,071
INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 123537 as yet unmatched pairs. 80 records in RAM.
INFO 2026-06-08 08:47:42 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:202,746,195
INFO 2026-06-08 08:47:42 MarkDuplicates Tracking 126416 as yet unmatched pairs. 346 records in RAM.
INFO 2026-06-08 08:47:44 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:204,549,326
INFO 2026-06-08 08:47:44 MarkDuplicates Tracking 129436 as yet unmatched pairs. 832 records in RAM.
INFO 2026-06-08 08:47:45 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:206,939,444
INFO 2026-06-08 08:47:45 MarkDuplicates Tracking 131706 as yet unmatched pairs. 655 records in RAM.
INFO 2026-06-08 08:47:47 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:212,006,697
INFO 2026-06-08 08:47:47 MarkDuplicates Tracking 133820 as yet unmatched pairs. 134 records in RAM.
INFO 2026-06-08 08:47:48 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:223,744,130
INFO 2026-06-08 08:47:48 MarkDuplicates Tracking 136296 as yet unmatched pairs. 142 records in RAM.
INFO 2026-06-08 08:47:50 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:226,381,068
INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 138448 as yet unmatched pairs. 44 records in RAM.
INFO 2026-06-08 08:47:51 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:231,421,201
INFO 2026-06-08 08:47:51 MarkDuplicates Tracking 141322 as yet unmatched pairs. 56 records in RAM.
INFO 2026-06-08 08:47:53 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 2s. Last read position: chr1:236,795,662
INFO 2026-06-08 08:47:53 MarkDuplicates Tracking 144279 as yet unmatched pairs. 186 records in RAM.
INFO 2026-06-08 08:47:55 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:247,300,463
INFO 2026-06-08 08:47:55 MarkDuplicates Tracking 146518 as yet unmatched pairs. 45 records in RAM.
INFO 2026-06-08 08:47:58 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 2s. Last read position: chr2:9,585,296
INFO 2026-06-08 08:47:58 MarkDuplicates Tracking 149820 as yet unmatched pairs. 149127 records in RAM.
INFO 2026-06-08 08:48:00 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr2:20,034,966
INFO 2026-06-08 08:48:00 MarkDuplicates Tracking 152348 as yet unmatched pairs. 151639 records in RAM.
INFO 2026-06-08 08:48:02 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:25,300,196
INFO 2026-06-08 08:48:02 MarkDuplicates Tracking 154718 as yet unmatched pairs. 153999 records in RAM.
INFO 2026-06-08 08:48:03 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:27,337,333
INFO 2026-06-08 08:48:03 MarkDuplicates Tracking 157556 as yet unmatched pairs. 156829 records in RAM.
INFO 2026-06-08 08:48:05 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:32,029,697
INFO 2026-06-08 08:48:05 MarkDuplicates Tracking 160358 as yet unmatched pairs. 159628 records in RAM.
INFO 2026-06-08 08:48:07 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,258
INFO 2026-06-08 08:48:07 MarkDuplicates Tracking 240272 as yet unmatched pairs. 156057 records in RAM.
INFO 2026-06-08 08:48:08 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 629599 as yet unmatched pairs. 134860 records in RAM.
INFO 2026-06-08 08:48:10 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,265
INFO 2026-06-08 08:48:10 MarkDuplicates Tracking 1241198 as yet unmatched pairs. 101757 records in RAM.
INFO 2026-06-08 08:48:12 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:48:12 MarkDuplicates Tracking 1350687 as yet unmatched pairs. 95500 records in RAM.
INFO 2026-06-08 08:48:14 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,412
INFO 2026-06-08 08:48:14 MarkDuplicates Tracking 1391857 as yet unmatched pairs. 93501 records in RAM.
INFO 2026-06-08 08:48:15 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:38,318,611
INFO 2026-06-08 08:48:15 MarkDuplicates Tracking 1443463 as yet unmatched pairs. 88815 records in RAM.
INFO 2026-06-08 08:48:17 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:43,225,238
INFO 2026-06-08 08:48:17 MarkDuplicates Tracking 1441138 as yet unmatched pairs. 86477 records in RAM.
INFO 2026-06-08 08:48:19 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 2s. Last read position: chr2:47,161,723
INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 1439206 as yet unmatched pairs. 84521 records in RAM.
INFO 2026-06-08 08:48:21 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 2s. Last read position: chr2:54,629,304
INFO 2026-06-08 08:48:21 MarkDuplicates Tracking 1436414 as yet unmatched pairs. 81721 records in RAM.
INFO 2026-06-08 08:48:23 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:55,581,581
INFO 2026-06-08 08:48:23 MarkDuplicates Tracking 1433001 as yet unmatched pairs. 78302 records in RAM.
INFO 2026-06-08 08:48:25 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:64,636,718
INFO 2026-06-08 08:48:25 MarkDuplicates Tracking 1430405 as yet unmatched pairs. 75700 records in RAM.
INFO 2026-06-08 08:48:26 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:70,216,894
INFO 2026-06-08 08:48:26 MarkDuplicates Tracking 1428198 as yet unmatched pairs. 73477 records in RAM.
INFO 2026-06-08 08:48:28 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:74,208,668
INFO 2026-06-08 08:48:28 MarkDuplicates Tracking 1425589 as yet unmatched pairs. 70867 records in RAM.
INFO 2026-06-08 08:48:29 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:85,326,909
INFO 2026-06-08 08:48:29 MarkDuplicates Tracking 1422971 as yet unmatched pairs. 68248 records in RAM.
INFO 2026-06-08 08:48:31 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:87,989,114
INFO 2026-06-08 08:48:31 MarkDuplicates Tracking 1420386 as yet unmatched pairs. 65648 records in RAM.
INFO 2026-06-08 08:48:32 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:96,290,488
INFO 2026-06-08 08:48:32 MarkDuplicates Tracking 1418263 as yet unmatched pairs. 63522 records in RAM.
INFO 2026-06-08 08:48:34 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:100,975,451
INFO 2026-06-08 08:48:34 MarkDuplicates Tracking 1416103 as yet unmatched pairs. 61340 records in RAM.
INFO 2026-06-08 08:48:36 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 2s. Last read position: chr2:108,621,353
INFO 2026-06-08 08:48:36 MarkDuplicates Tracking 1413876 as yet unmatched pairs. 59105 records in RAM.
INFO 2026-06-08 08:48:38 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:109,175,152
INFO 2026-06-08 08:48:38 MarkDuplicates Tracking 1411874 as yet unmatched pairs. 57101 records in RAM.
INFO 2026-06-08 08:48:39 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:112,055,582
INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 1410683 as yet unmatched pairs. 55902 records in RAM.
INFO 2026-06-08 08:48:40 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:117,920,307
INFO 2026-06-08 08:48:40 MarkDuplicates Tracking 1408690 as yet unmatched pairs. 53905 records in RAM.
INFO 2026-06-08 08:48:42 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:128,475,212
INFO 2026-06-08 08:48:42 MarkDuplicates Tracking 1405892 as yet unmatched pairs. 51099 records in RAM.
INFO 2026-06-08 08:48:44 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:144,401,219
INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 1403704 as yet unmatched pairs. 48888 records in RAM.
INFO 2026-06-08 08:48:45 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:159,478,657
INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 1401119 as yet unmatched pairs. 46283 records in RAM.
INFO 2026-06-08 08:48:47 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:171,517,627
INFO 2026-06-08 08:48:47 MarkDuplicates Tracking 1398627 as yet unmatched pairs. 43771 records in RAM.
INFO 2026-06-08 08:48:49 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 2s. Last read position: chr2:177,215,812
INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 1396970 as yet unmatched pairs. 42103 records in RAM.
INFO 2026-06-08 08:48:50 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:182,989,093
INFO 2026-06-08 08:48:50 MarkDuplicates Tracking 1394404 as yet unmatched pairs. 39531 records in RAM.
INFO 2026-06-08 08:48:52 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:189,008,079
INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 1392510 as yet unmatched pairs. 37630 records in RAM.
INFO 2026-06-08 08:48:54 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:191,007,581
INFO 2026-06-08 08:48:54 MarkDuplicates Tracking 1389507 as yet unmatched pairs. 34620 records in RAM.
INFO 2026-06-08 08:48:56 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:199,802,218
INFO 2026-06-08 08:48:56 MarkDuplicates Tracking 1385812 as yet unmatched pairs. 30909 records in RAM.
INFO 2026-06-08 08:48:57 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:203,441,084
INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 1383599 as yet unmatched pairs. 28675 records in RAM.
INFO 2026-06-08 08:49:00 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 2s. Last read position: chr2:215,361,972
INFO 2026-06-08 08:49:00 MarkDuplicates Tracking 1385592 as yet unmatched pairs. 30664 records in RAM.
INFO 2026-06-08 08:49:01 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:215,379,191
INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 1381340 as yet unmatched pairs. 26402 records in RAM.
INFO 2026-06-08 08:49:03 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:215,406,360
INFO 2026-06-08 08:49:03 MarkDuplicates Tracking 1378004 as yet unmatched pairs. 23047 records in RAM.
INFO 2026-06-08 08:49:05 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:215,431,857
INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 1378849 as yet unmatched pairs. 23884 records in RAM.
INFO 2026-06-08 08:49:06 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:218,275,600
INFO 2026-06-08 08:49:06 MarkDuplicates Tracking 1371758 as yet unmatched pairs. 16778 records in RAM.
INFO 2026-06-08 08:49:07 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:219,282,878
INFO 2026-06-08 08:49:07 MarkDuplicates Tracking 1368606 as yet unmatched pairs. 13620 records in RAM.
INFO 2026-06-08 08:49:09 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:229,880,001
INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 1366622 as yet unmatched pairs. 11613 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:231,711,410
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 1364228 as yet unmatched pairs. 9219 records in RAM.
INFO 2026-06-08 08:49:12 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:237,344,445
INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 1361374 as yet unmatched pairs. 6362 records in RAM.
INFO 2026-06-08 08:49:14 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:239,993,669
INFO 2026-06-08 08:49:14 MarkDuplicates Tracking 1358422 as yet unmatched pairs. 3400 records in RAM.
INFO 2026-06-08 08:49:16 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:241,633,842
INFO 2026-06-08 08:49:16 MarkDuplicates Tracking 1355609 as yet unmatched pairs. 576 records in RAM.
INFO 2026-06-08 08:49:18 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 2s. Last read position: chr3:9,969,741
INFO 2026-06-08 08:49:18 MarkDuplicates Tracking 1352792 as yet unmatched pairs. 75696 records in RAM.
INFO 2026-06-08 08:49:19 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr3:13,360,321
INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 1350253 as yet unmatched pairs. 73142 records in RAM.
INFO 2026-06-08 08:49:21 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr3:25,636,117
INFO 2026-06-08 08:49:21 MarkDuplicates Tracking 1347819 as yet unmatched pairs. 70700 records in RAM.
INFO 2026-06-08 08:49:22 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr3:36,895,708
INFO 2026-06-08 08:49:22 MarkDuplicates Tracking 1345244 as yet unmatched pairs. 68082 records in RAM.
INFO 2026-06-08 08:49:24 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr3:40,458,715
INFO 2026-06-08 08:49:24 MarkDuplicates Tracking 1344411 as yet unmatched pairs. 67245 records in RAM.
INFO 2026-06-08 08:49:25 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr3:44,567,937
INFO 2026-06-08 08:49:25 MarkDuplicates Tracking 1340078 as yet unmatched pairs. 62896 records in RAM.
INFO 2026-06-08 08:49:27 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr3:47,122,409
INFO 2026-06-08 08:49:27 MarkDuplicates Tracking 1337798 as yet unmatched pairs. 60614 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:48,413,747
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 1334921 as yet unmatched pairs. 57726 records in RAM.
INFO 2026-06-08 08:49:30 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr3:48,609,217
INFO 2026-06-08 08:49:30 MarkDuplicates Tracking 1331815 as yet unmatched pairs. 54616 records in RAM.
INFO 2026-06-08 08:49:32 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:49,123,927
INFO 2026-06-08 08:49:32 MarkDuplicates Tracking 1328859 as yet unmatched pairs. 51654 records in RAM.
INFO 2026-06-08 08:49:34 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 2s. Last read position: chr3:49,968,523
INFO 2026-06-08 08:49:34 MarkDuplicates Tracking 1326316 as yet unmatched pairs. 49110 records in RAM.
INFO 2026-06-08 08:49:35 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:51,993,899
INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 1323903 as yet unmatched pairs. 46681 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr3:52,706,692
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 1321136 as yet unmatched pairs. 43907 records in RAM.
INFO 2026-06-08 08:49:40 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 2s. Last read position: chr3:58,097,918
INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 1317999 as yet unmatched pairs. 40756 records in RAM.
INFO 2026-06-08 08:49:41 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:66,417,142
INFO 2026-06-08 08:49:41 MarkDuplicates Tracking 1315369 as yet unmatched pairs. 38108 records in RAM.
INFO 2026-06-08 08:49:43 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:99,849,427
INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 1313520 as yet unmatched pairs. 36253 records in RAM.
INFO 2026-06-08 08:49:45 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr3:111,884,703
INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 1310607 as yet unmatched pairs. 33335 records in RAM.
INFO 2026-06-08 08:49:47 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:121,696,603
INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 1308129 as yet unmatched pairs. 30828 records in RAM.
INFO 2026-06-08 08:49:48 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:124,908,163
INFO 2026-06-08 08:49:48 MarkDuplicates Tracking 1307070 as yet unmatched pairs. 29757 records in RAM.
INFO 2026-06-08 08:49:50 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:128,625,578
INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 1302927 as yet unmatched pairs. 25587 records in RAM.
INFO 2026-06-08 08:49:52 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:131,498,224
INFO 2026-06-08 08:49:52 MarkDuplicates Tracking 1300468 as yet unmatched pairs. 23118 records in RAM.
INFO 2026-06-08 08:49:53 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:141,443,111
INFO 2026-06-08 08:49:53 MarkDuplicates Tracking 1297538 as yet unmatched pairs. 20172 records in RAM.
INFO 2026-06-08 08:49:55 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:150,410,721
INFO 2026-06-08 08:49:55 MarkDuplicates Tracking 1295429 as yet unmatched pairs. 18048 records in RAM.
INFO 2026-06-08 08:49:56 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:167,695,682
INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 1292692 as yet unmatched pairs. 15298 records in RAM.
INFO 2026-06-08 08:49:58 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:179,201,301
INFO 2026-06-08 08:49:58 MarkDuplicates Tracking 1290300 as yet unmatched pairs. 12878 records in RAM.
INFO 2026-06-08 08:50:00 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:184,301,876
INFO 2026-06-08 08:50:00 MarkDuplicates Tracking 1287720 as yet unmatched pairs. 10295 records in RAM.
INFO 2026-06-08 08:50:01 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:186,048,782
INFO 2026-06-08 08:50:01 MarkDuplicates Tracking 1284979 as yet unmatched pairs. 7552 records in RAM.
INFO 2026-06-08 08:50:03 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:194,431,801
INFO 2026-06-08 08:50:03 MarkDuplicates Tracking 1283113 as yet unmatched pairs. 5670 records in RAM.
INFO 2026-06-08 08:50:04 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:195,781,027
INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 1282318 as yet unmatched pairs. 4873 records in RAM.
INFO 2026-06-08 08:50:06 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:195,789,168
INFO 2026-06-08 08:50:06 MarkDuplicates Tracking 1280019 as yet unmatched pairs. 2568 records in RAM.
INFO 2026-06-08 08:50:07 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:197,996,251
INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 1277516 as yet unmatched pairs. 50 records in RAM.
INFO 2026-06-08 08:50:09 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr4:1,816,806
INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 1274291 as yet unmatched pairs. 34231 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 2s. Last read position: chr4:6,709,229
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 1271531 as yet unmatched pairs. 31462 records in RAM.
INFO 2026-06-08 08:50:13 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr4:17,804,010
INFO 2026-06-08 08:50:13 MarkDuplicates Tracking 1269186 as yet unmatched pairs. 29105 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr4:39,849,533
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 1266883 as yet unmatched pairs. 26792 records in RAM.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr4:54,278,004
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 1264998 as yet unmatched pairs. 24880 records in RAM.
INFO 2026-06-08 08:50:18 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr4:68,930,002
INFO 2026-06-08 08:50:18 MarkDuplicates Tracking 1261645 as yet unmatched pairs. 21520 records in RAM.
INFO 2026-06-08 08:50:20 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 2s. Last read position: chr4:74,037,240
INFO 2026-06-08 08:50:20 MarkDuplicates Tracking 1259642 as yet unmatched pairs. 19516 records in RAM.
INFO 2026-06-08 08:50:22 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr4:78,859,592
INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 1256879 as yet unmatched pairs. 16739 records in RAM.
INFO 2026-06-08 08:50:24 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr4:87,975,730
INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 1254528 as yet unmatched pairs. 14373 records in RAM.
INFO 2026-06-08 08:50:26 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 2s. Last read position: chr4:105,967,379
INFO 2026-06-08 08:50:26 MarkDuplicates Tracking 1252322 as yet unmatched pairs. 12140 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr4:122,264,332
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 1249835 as yet unmatched pairs. 9647 records in RAM.
INFO 2026-06-08 08:50:29 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr4:143,911,721
INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 1247376 as yet unmatched pairs. 7179 records in RAM.
INFO 2026-06-08 08:50:30 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr4:153,704,466
INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 1245088 as yet unmatched pairs. 4876 records in RAM.
INFO 2026-06-08 08:50:32 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr4:183,447,201
INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 1242621 as yet unmatched pairs. 2387 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 2s. Last read position: chr5:251,429
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 1240577 as yet unmatched pairs. 65842 records in RAM.
INFO 2026-06-08 08:50:36 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr5:6,604,242
INFO 2026-06-08 08:50:36 MarkDuplicates Tracking 1237256 as yet unmatched pairs. 62516 records in RAM.
INFO 2026-06-08 08:50:37 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr5:14,330,812
INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 1234632 as yet unmatched pairs. 59864 records in RAM.
INFO 2026-06-08 08:50:39 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr5:14,504,552
INFO 2026-06-08 08:50:39 MarkDuplicates Tracking 1232196 as yet unmatched pairs. 57424 records in RAM.
INFO 2026-06-08 08:50:41 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr5:33,162,176
INFO 2026-06-08 08:50:41 MarkDuplicates Tracking 1229045 as yet unmatched pairs. 54241 records in RAM.
INFO 2026-06-08 08:50:42 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr5:39,201,854
INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 1226738 as yet unmatched pairs. 51908 records in RAM.
INFO 2026-06-08 08:50:44 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr5:55,328,765
INFO 2026-06-08 08:50:44 MarkDuplicates Tracking 1224471 as yet unmatched pairs. 49614 records in RAM.
INFO 2026-06-08 08:50:46 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr5:69,545,109
INFO 2026-06-08 08:50:46 MarkDuplicates Tracking 1222135 as yet unmatched pairs. 47256 records in RAM.
INFO 2026-06-08 08:50:47 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr5:74,720,663
INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 1220570 as yet unmatched pairs. 45684 records in RAM.
INFO 2026-06-08 08:50:49 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 2s. Last read position: chr5:83,520,804
INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 1217814 as yet unmatched pairs. 42919 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr5:96,915,732
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 1215262 as yet unmatched pairs. 40363 records in RAM.
INFO 2026-06-08 08:50:52 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr5:122,027,049
INFO 2026-06-08 08:50:52 MarkDuplicates Tracking 1212847 as yet unmatched pairs. 37922 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 2s. Last read position: chr5:132,886,310
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 1210243 as yet unmatched pairs. 35313 records in RAM.
INFO 2026-06-08 08:50:57 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 2s. Last read position: chr5:136,059,176
INFO 2026-06-08 08:50:57 MarkDuplicates Tracking 1208389 as yet unmatched pairs. 33452 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr5:139,614,913
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 1205550 as yet unmatched pairs. 30603 records in RAM.
INFO 2026-06-08 08:51:00 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr5:141,850,503
INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 1202612 as yet unmatched pairs. 27604 records in RAM.
INFO 2026-06-08 08:51:01 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr5:149,832,916
INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 1200195 as yet unmatched pairs. 25156 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr5:150,375,142
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 1197885 as yet unmatched pairs. 22837 records in RAM.
INFO 2026-06-08 08:51:05 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,287
INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 1205422 as yet unmatched pairs. 30374 records in RAM.
INFO 2026-06-08 08:51:06 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:151,663,529
INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 1193544 as yet unmatched pairs. 18491 records in RAM.
INFO 2026-06-08 08:51:08 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:160,565,627
INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 1189487 as yet unmatched pairs. 14428 records in RAM.
INFO 2026-06-08 08:51:10 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:171,391,744
INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 1191431 as yet unmatched pairs. 16363 records in RAM.
INFO 2026-06-08 08:51:11 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:173,890,101
INFO 2026-06-08 08:51:11 MarkDuplicates Tracking 1185030 as yet unmatched pairs. 9955 records in RAM.
INFO 2026-06-08 08:51:13 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:177,512,348
INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 1182248 as yet unmatched pairs. 7170 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:179,766,175
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 1179968 as yet unmatched pairs. 4875 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:179,864,084
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 1176994 as yet unmatched pairs. 1900 records in RAM.
INFO 2026-06-08 08:51:18 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 2s. Last read position: chr6:2,836,108
INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 1174335 as yet unmatched pairs. 77180 records in RAM.
INFO 2026-06-08 08:51:20 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr6:7,289,772
INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 1171956 as yet unmatched pairs. 74788 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr6:15,520,342
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 1168737 as yet unmatched pairs. 71557 records in RAM.
INFO 2026-06-08 08:51:23 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr6:26,055,963
INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 1166384 as yet unmatched pairs. 69186 records in RAM.
INFO 2026-06-08 08:51:24 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr6:26,458,079
INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 1163624 as yet unmatched pairs. 66421 records in RAM.
INFO 2026-06-08 08:51:26 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr6:27,892,921
INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 1161224 as yet unmatched pairs. 64017 records in RAM.
INFO 2026-06-08 08:51:28 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr6:30,067,214
INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 1158472 as yet unmatched pairs. 61264 records in RAM.
INFO 2026-06-08 08:51:29 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr6:30,888,981
INFO 2026-06-08 08:51:29 MarkDuplicates Tracking 1156103 as yet unmatched pairs. 58893 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 2s. Last read position: chr6:31,540,357
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 1153793 as yet unmatched pairs. 56577 records in RAM.
INFO 2026-06-08 08:51:34 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr6:31,733,937
INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 1151092 as yet unmatched pairs. 53875 records in RAM.
INFO 2026-06-08 08:51:35 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr6:31,874,929
INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 1148880 as yet unmatched pairs. 51659 records in RAM.
INFO 2026-06-08 08:51:37 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr6:32,530,125
INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 1146514 as yet unmatched pairs. 49292 records in RAM.
INFO 2026-06-08 08:51:38 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr6:33,289,114
INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 1143343 as yet unmatched pairs. 46115 records in RAM.
INFO 2026-06-08 08:51:40 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr6:33,686,474
INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 1140864 as yet unmatched pairs. 43634 records in RAM.
INFO 2026-06-08 08:51:41 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:36,207,363
INFO 2026-06-08 08:51:41 MarkDuplicates Tracking 1137829 as yet unmatched pairs. 40583 records in RAM.
INFO 2026-06-08 08:51:43 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:42,142,323
INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 1135252 as yet unmatched pairs. 37989 records in RAM.
INFO 2026-06-08 08:51:45 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:43,551,314
INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 1132676 as yet unmatched pairs. 35412 records in RAM.
INFO 2026-06-08 08:51:46 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr6:47,285,960
INFO 2026-06-08 08:51:46 MarkDuplicates Tracking 1130315 as yet unmatched pairs. 33029 records in RAM.
INFO 2026-06-08 08:51:48 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr6:57,101,732
INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 1127447 as yet unmatched pairs. 30131 records in RAM.
INFO 2026-06-08 08:51:49 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:75,177,802
INFO 2026-06-08 08:51:49 MarkDuplicates Tracking 1125832 as yet unmatched pairs. 28500 records in RAM.
INFO 2026-06-08 08:51:51 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:85,637,275
INFO 2026-06-08 08:51:51 MarkDuplicates Tracking 1122971 as yet unmatched pairs. 25639 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:100,652,749
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 1120341 as yet unmatched pairs. 22991 records in RAM.
INFO 2026-06-08 08:51:54 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:109,447,379
INFO 2026-06-08 08:51:54 MarkDuplicates Tracking 1117960 as yet unmatched pairs. 20599 records in RAM.
INFO 2026-06-08 08:51:56 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:117,694,038
INFO 2026-06-08 08:51:56 MarkDuplicates Tracking 1115164 as yet unmatched pairs. 17792 records in RAM.
INFO 2026-06-08 08:51:57 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr6:133,984,374
INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 1112831 as yet unmatched pairs. 15439 records in RAM.
INFO 2026-06-08 08:51:59 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:138,263,007
INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 1110232 as yet unmatched pairs. 12823 records in RAM.
INFO 2026-06-08 08:52:01 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:149,378,175
INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 1107682 as yet unmatched pairs. 10260 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 2s. Last read position: chr6:157,190,099
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 1105045 as yet unmatched pairs. 7613 records in RAM.
INFO 2026-06-08 08:52:05 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr6:159,221,667
INFO 2026-06-08 08:52:05 MarkDuplicates Tracking 1102258 as yet unmatched pairs. 4823 records in RAM.
INFO 2026-06-08 08:52:07 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr6:163,569,926
INFO 2026-06-08 08:52:07 MarkDuplicates Tracking 1100307 as yet unmatched pairs. 2854 records in RAM.
INFO 2026-06-08 08:52:09 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 2s. Last read position: chr7:842,019
INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 1097520 as yet unmatched pairs. 113852 records in RAM.
INFO 2026-06-08 08:52:11 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr7:2,632,215
INFO 2026-06-08 08:52:11 MarkDuplicates Tracking 1093860 as yet unmatched pairs. 110178 records in RAM.
INFO 2026-06-08 08:52:13 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr7:5,505,522
INFO 2026-06-08 08:52:13 MarkDuplicates Tracking 1090575 as yet unmatched pairs. 106886 records in RAM.
INFO 2026-06-08 08:52:14 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,569
INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 1096530 as yet unmatched pairs. 112831 records in RAM.
INFO 2026-06-08 08:52:16 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr7:6,171,232
INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 1085238 as yet unmatched pairs. 101532 records in RAM.
INFO 2026-06-08 08:52:18 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr7:18,591,517
INFO 2026-06-08 08:52:18 MarkDuplicates Tracking 1082745 as yet unmatched pairs. 99026 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr7:27,172,021
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 1080509 as yet unmatched pairs. 96785 records in RAM.
INFO 2026-06-08 08:52:21 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr7:37,222,662
INFO 2026-06-08 08:52:21 MarkDuplicates Tracking 1077775 as yet unmatched pairs. 94033 records in RAM.
INFO 2026-06-08 08:52:22 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr7:44,114,825
INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 1075390 as yet unmatched pairs. 91641 records in RAM.
INFO 2026-06-08 08:52:24 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr7:47,368,371
INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 1072530 as yet unmatched pairs. 88775 records in RAM.
INFO 2026-06-08 08:52:26 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr7:57,004,312
INFO 2026-06-08 08:52:26 MarkDuplicates Tracking 1069771 as yet unmatched pairs. 86007 records in RAM.
INFO 2026-06-08 08:52:27 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr7:72,942,800
INFO 2026-06-08 08:52:27 MarkDuplicates Tracking 1067882 as yet unmatched pairs. 84102 records in RAM.
INFO 2026-06-08 08:52:28 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr7:73,683,649
INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 1066390 as yet unmatched pairs. 82608 records in RAM.
INFO 2026-06-08 08:52:30 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr7:75,018,022
INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 1063881 as yet unmatched pairs. 80098 records in RAM.
INFO 2026-06-08 08:52:31 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr7:75,985,117
INFO 2026-06-08 08:52:31 MarkDuplicates Tracking 1062006 as yet unmatched pairs. 78214 records in RAM.
INFO 2026-06-08 08:52:33 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr7:77,055,218
INFO 2026-06-08 08:52:33 MarkDuplicates Tracking 1059382 as yet unmatched pairs. 75585 records in RAM.
INFO 2026-06-08 08:52:36 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 2s. Last read position: chr7:92,040,777
INFO 2026-06-08 08:52:36 MarkDuplicates Tracking 1057275 as yet unmatched pairs. 73471 records in RAM.
INFO 2026-06-08 08:52:37 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:94,406,273
INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 1055874 as yet unmatched pairs. 72051 records in RAM.
INFO 2026-06-08 08:52:39 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:98,193,835
INFO 2026-06-08 08:52:39 MarkDuplicates Tracking 1052076 as yet unmatched pairs. 68244 records in RAM.
INFO 2026-06-08 08:52:41 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:99,562,374
INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 1049328 as yet unmatched pairs. 65489 records in RAM.
INFO 2026-06-08 08:52:42 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr7:100,478,074
INFO 2026-06-08 08:52:42 MarkDuplicates Tracking 1046567 as yet unmatched pairs. 62724 records in RAM.
INFO 2026-06-08 08:52:44 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr7:100,969,589
INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 1045490 as yet unmatched pairs. 61639 records in RAM.
INFO 2026-06-08 08:52:45 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:100,992,593
INFO 2026-06-08 08:52:45 MarkDuplicates Tracking 1043151 as yet unmatched pairs. 59298 records in RAM.
INFO 2026-06-08 08:52:46 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,139
INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 1045803 as yet unmatched pairs. 61949 records in RAM.
INFO 2026-06-08 08:52:48 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,615
INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 1042513 as yet unmatched pairs. 58659 records in RAM.
INFO 2026-06-08 08:52:49 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,886
INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 1043213 as yet unmatched pairs. 59359 records in RAM.
INFO 2026-06-08 08:52:50 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,460
INFO 2026-06-08 08:52:50 MarkDuplicates Tracking 1041457 as yet unmatched pairs. 57603 records in RAM.
INFO 2026-06-08 08:52:51 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,954
INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 1041189 as yet unmatched pairs. 57335 records in RAM.
INFO 2026-06-08 08:52:52 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,247
INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 1042561 as yet unmatched pairs. 58707 records in RAM.
INFO 2026-06-08 08:52:53 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,010
INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 1041127 as yet unmatched pairs. 57273 records in RAM.
INFO 2026-06-08 08:52:54 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,283
INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 1041284 as yet unmatched pairs. 57430 records in RAM.
INFO 2026-06-08 08:52:56 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,450
INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 1052709 as yet unmatched pairs. 68853 records in RAM.
INFO 2026-06-08 08:52:57 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,787
INFO 2026-06-08 08:52:57 MarkDuplicates Tracking 1039500 as yet unmatched pairs. 55633 records in RAM.
INFO 2026-06-08 08:52:59 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,974
INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 1048006 as yet unmatched pairs. 64139 records in RAM.
INFO 2026-06-08 08:53:00 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,239
INFO 2026-06-08 08:53:00 MarkDuplicates Tracking 1035791 as yet unmatched pairs. 51924 records in RAM.
INFO 2026-06-08 08:53:02 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,575
INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 1037921 as yet unmatched pairs. 54048 records in RAM.
INFO 2026-06-08 08:53:03 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,920
INFO 2026-06-08 08:53:03 MarkDuplicates Tracking 1049373 as yet unmatched pairs. 65498 records in RAM.
INFO 2026-06-08 08:53:05 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,176
INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 1034438 as yet unmatched pairs. 50563 records in RAM.
INFO 2026-06-08 08:53:06 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 0s. Last read position: chr7:100,998,397
INFO 2026-06-08 08:53:06 MarkDuplicates Tracking 1032587 as yet unmatched pairs. 48712 records in RAM.
INFO 2026-06-08 08:53:07 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,650
INFO 2026-06-08 08:53:07 MarkDuplicates Tracking 1057736 as yet unmatched pairs. 73861 records in RAM.
INFO 2026-06-08 08:53:08 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,914
INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 1031358 as yet unmatched pairs. 47483 records in RAM.
INFO 2026-06-08 08:53:09 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,375
INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 1033254 as yet unmatched pairs. 49379 records in RAM.
INFO 2026-06-08 08:53:10 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,745
INFO 2026-06-08 08:53:10 MarkDuplicates Tracking 1034683 as yet unmatched pairs. 50805 records in RAM.
INFO 2026-06-08 08:53:12 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,081
INFO 2026-06-08 08:53:12 MarkDuplicates Tracking 1034010 as yet unmatched pairs. 50132 records in RAM.
INFO 2026-06-08 08:53:13 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,459
INFO 2026-06-08 08:53:13 MarkDuplicates Tracking 1032484 as yet unmatched pairs. 48592 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,824
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 1043121 as yet unmatched pairs. 59227 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,058
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 1029238 as yet unmatched pairs. 45337 records in RAM.
INFO 2026-06-08 08:53:17 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,356
INFO 2026-06-08 08:53:17 MarkDuplicates Tracking 1028756 as yet unmatched pairs. 44854 records in RAM.
INFO 2026-06-08 08:53:18 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 0s. Last read position: chr7:101,001,579
INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 1024557 as yet unmatched pairs. 40655 records in RAM.
INFO 2026-06-08 08:53:19 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 0s. Last read position: chr7:101,001,848
INFO 2026-06-08 08:53:19 MarkDuplicates Tracking 1025984 as yet unmatched pairs. 42082 records in RAM.
INFO 2026-06-08 08:53:20 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,355
INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 1030229 as yet unmatched pairs. 46327 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,898
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 1036299 as yet unmatched pairs. 52393 records in RAM.
INFO 2026-06-08 08:53:24 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,705
INFO 2026-06-08 08:53:24 MarkDuplicates Tracking 1018515 as yet unmatched pairs. 34604 records in RAM.
INFO 2026-06-08 08:53:25 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr7:101,004,134
INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 1017765 as yet unmatched pairs. 33854 records in RAM.
INFO 2026-06-08 08:53:27 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr7:101,216,226
INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 1015612 as yet unmatched pairs. 31691 records in RAM.
INFO 2026-06-08 08:53:28 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr7:102,655,071
INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 1014200 as yet unmatched pairs. 30277 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr7:106,284,826
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 1012347 as yet unmatched pairs. 28412 records in RAM.
INFO 2026-06-08 08:53:32 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr7:116,250,230
INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 1009678 as yet unmatched pairs. 25731 records in RAM.
INFO 2026-06-08 08:53:33 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr7:122,393,559
INFO 2026-06-08 08:53:33 MarkDuplicates Tracking 1007095 as yet unmatched pairs. 23134 records in RAM.
INFO 2026-06-08 08:53:35 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr7:127,887,904
INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 1008322 as yet unmatched pairs. 24359 records in RAM.
INFO 2026-06-08 08:53:37 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr7:129,422,839
INFO 2026-06-08 08:53:37 MarkDuplicates Tracking 1002346 as yet unmatched pairs. 18370 records in RAM.
INFO 2026-06-08 08:54:37 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 60s. Last read position: chr7:137,885,005
INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 1000658 as yet unmatched pairs. 16674 records in RAM.
INFO 2026-06-08 08:54:39 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr7:139,573,343
INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 997186 as yet unmatched pairs. 13200 records in RAM.
INFO 2026-06-08 08:54:41 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr7:143,294,596
INFO 2026-06-08 08:54:41 MarkDuplicates Tracking 994750 as yet unmatched pairs. 10756 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr7:144,377,145
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 992845 as yet unmatched pairs. 8848 records in RAM.
INFO 2026-06-08 08:54:44 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr7:150,791,532
INFO 2026-06-08 08:54:44 MarkDuplicates Tracking 992425 as yet unmatched pairs. 8419 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr7:152,144,868
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 987242 as yet unmatched pairs. 3234 records in RAM.
INFO 2026-06-08 08:54:47 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr7:158,133,776
INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 984626 as yet unmatched pairs. 610 records in RAM.
INFO 2026-06-08 08:54:49 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 2s. Last read position: chr8:17,230,798
INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 982160 as yet unmatched pairs. 65525 records in RAM.
INFO 2026-06-08 08:54:51 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr8:23,259,122
INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 979428 as yet unmatched pairs. 62784 records in RAM.
INFO 2026-06-08 08:54:52 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr8:32,727,944
INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 977198 as yet unmatched pairs. 60549 records in RAM.
INFO 2026-06-08 08:54:54 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr8:38,331,514
INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 975002 as yet unmatched pairs. 58351 records in RAM.
INFO 2026-06-08 08:54:55 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr8:41,509,620
INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 971371 as yet unmatched pairs. 54713 records in RAM.
INFO 2026-06-08 08:54:57 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr8:47,819,459
INFO 2026-06-08 08:54:57 MarkDuplicates Tracking 969337 as yet unmatched pairs. 52673 records in RAM.
INFO 2026-06-08 08:54:59 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr8:54,147,381
INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 966141 as yet unmatched pairs. 49475 records in RAM.
INFO 2026-06-08 08:55:00 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr8:61,714,279
INFO 2026-06-08 08:55:00 MarkDuplicates Tracking 963736 as yet unmatched pairs. 47060 records in RAM.
INFO 2026-06-08 08:55:02 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr8:70,586,930
INFO 2026-06-08 08:55:02 MarkDuplicates Tracking 962112 as yet unmatched pairs. 45425 records in RAM.
INFO 2026-06-08 08:55:03 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr8:86,342,913
INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 959152 as yet unmatched pairs. 42457 records in RAM.
INFO 2026-06-08 08:55:06 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 2s. Last read position: chr8:94,853,875
INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 957032 as yet unmatched pairs. 40333 records in RAM.
INFO 2026-06-08 08:55:08 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr8:100,703,319
INFO 2026-06-08 08:55:08 MarkDuplicates Tracking 960306 as yet unmatched pairs. 43599 records in RAM.
INFO 2026-06-08 08:55:09 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr8:100,923,968
INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 953690 as yet unmatched pairs. 36976 records in RAM.
INFO 2026-06-08 08:55:11 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 2s. Last read position: chr8:108,235,026
INFO 2026-06-08 08:55:11 MarkDuplicates Tracking 949755 as yet unmatched pairs. 33039 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr8:123,349,363
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 946458 as yet unmatched pairs. 29738 records in RAM.
INFO 2026-06-08 08:55:15 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,744
INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 947139 as yet unmatched pairs. 30417 records in RAM.
INFO 2026-06-08 08:55:16 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr8:140,371,059
INFO 2026-06-08 08:55:16 MarkDuplicates Tracking 941089 as yet unmatched pairs. 24347 records in RAM.
INFO 2026-06-08 08:55:18 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr8:143,579,753
INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 938881 as yet unmatched pairs. 22134 records in RAM.
INFO 2026-06-08 08:55:20 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,185
INFO 2026-06-08 08:55:20 MarkDuplicates Tracking 934879 as yet unmatched pairs. 18118 records in RAM.
INFO 2026-06-08 08:55:21 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,605
INFO 2026-06-08 08:55:21 MarkDuplicates Tracking 935096 as yet unmatched pairs. 18335 records in RAM.
INFO 2026-06-08 08:55:22 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,897
INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 936421 as yet unmatched pairs. 19660 records in RAM.
INFO 2026-06-08 08:55:23 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,853
INFO 2026-06-08 08:55:23 MarkDuplicates Tracking 932423 as yet unmatched pairs. 15662 records in RAM.
INFO 2026-06-08 08:55:24 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr8:143,870,234
INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 931018 as yet unmatched pairs. 14253 records in RAM.
INFO 2026-06-08 08:55:26 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr8:143,923,742
INFO 2026-06-08 08:55:26 MarkDuplicates Tracking 927365 as yet unmatched pairs. 10592 records in RAM.
INFO 2026-06-08 08:55:27 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr8:144,098,868
INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 923686 as yet unmatched pairs. 6905 records in RAM.
INFO 2026-06-08 08:55:29 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr8:144,398,618
INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 921346 as yet unmatched pairs. 4558 records in RAM.
INFO 2026-06-08 08:55:30 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr8:144,850,670
INFO 2026-06-08 08:55:30 MarkDuplicates Tracking 917231 as yet unmatched pairs. 436 records in RAM.
INFO 2026-06-08 08:55:33 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 2s. Last read position: chr9:8,374,115
INFO 2026-06-08 08:55:33 MarkDuplicates Tracking 914632 as yet unmatched pairs. 58061 records in RAM.
INFO 2026-06-08 08:55:34 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr9:19,378,901
INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 914014 as yet unmatched pairs. 57408 records in RAM.
INFO 2026-06-08 08:55:36 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr9:34,098,412
INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 910066 as yet unmatched pairs. 53449 records in RAM.
INFO 2026-06-08 08:55:38 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 2s. Last read position: chr9:35,710,628
INFO 2026-06-08 08:55:38 MarkDuplicates Tracking 907062 as yet unmatched pairs. 50441 records in RAM.
INFO 2026-06-08 08:55:40 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr9:65,321,213
INFO 2026-06-08 08:55:40 MarkDuplicates Tracking 904308 as yet unmatched pairs. 47663 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr9:77,395,988
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 902247 as yet unmatched pairs. 45592 records in RAM.
INFO 2026-06-08 08:55:43 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr9:90,865,047
INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 899885 as yet unmatched pairs. 43228 records in RAM.
INFO 2026-06-08 08:55:45 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr9:93,497,485
INFO 2026-06-08 08:55:45 MarkDuplicates Tracking 897605 as yet unmatched pairs. 40946 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr9:98,844,113
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 894212 as yet unmatched pairs. 37541 records in RAM.
INFO 2026-06-08 08:55:48 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr9:107,318,804
INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 891959 as yet unmatched pairs. 35282 records in RAM.
INFO 2026-06-08 08:55:49 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr9:112,851,041
INFO 2026-06-08 08:55:49 MarkDuplicates Tracking 889070 as yet unmatched pairs. 32388 records in RAM.
INFO 2026-06-08 08:55:51 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr9:120,409,135
INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 886554 as yet unmatched pairs. 29867 records in RAM.
INFO 2026-06-08 08:55:52 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr9:123,609,472
INFO 2026-06-08 08:55:52 MarkDuplicates Tracking 884230 as yet unmatched pairs. 27531 records in RAM.
INFO 2026-06-08 08:55:54 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr9:127,485,751
INFO 2026-06-08 08:55:54 MarkDuplicates Tracking 881452 as yet unmatched pairs. 24737 records in RAM.
INFO 2026-06-08 08:55:56 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr9:128,203,548
INFO 2026-06-08 08:55:56 MarkDuplicates Tracking 878567 as yet unmatched pairs. 21850 records in RAM.
INFO 2026-06-08 08:55:57 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr9:128,820,797
INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 875636 as yet unmatched pairs. 18912 records in RAM.
INFO 2026-06-08 08:56:00 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 2s. Last read position: chr9:130,872,912
INFO 2026-06-08 08:56:00 MarkDuplicates Tracking 873431 as yet unmatched pairs. 16697 records in RAM.
INFO 2026-06-08 08:56:02 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr9:132,326,484
INFO 2026-06-08 08:56:02 MarkDuplicates Tracking 870518 as yet unmatched pairs. 13780 records in RAM.
INFO 2026-06-08 08:56:03 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr9:134,048,142
INFO 2026-06-08 08:56:03 MarkDuplicates Tracking 868400 as yet unmatched pairs. 11653 records in RAM.
INFO 2026-06-08 08:56:05 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr9:136,448,345
INFO 2026-06-08 08:56:05 MarkDuplicates Tracking 864676 as yet unmatched pairs. 7924 records in RAM.
INFO 2026-06-08 08:56:07 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr9:136,839,720
INFO 2026-06-08 08:56:07 MarkDuplicates Tracking 861638 as yet unmatched pairs. 4885 records in RAM.
INFO 2026-06-08 08:56:08 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr9:137,243,021
INFO 2026-06-08 08:56:08 MarkDuplicates Tracking 858767 as yet unmatched pairs. 2008 records in RAM.
INFO 2026-06-08 08:56:10 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr10:4,995,397
INFO 2026-06-08 08:56:10 MarkDuplicates Tracking 855524 as yet unmatched pairs. 47434 records in RAM.
INFO 2026-06-08 08:56:12 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr10:12,791,233
INFO 2026-06-08 08:56:12 MarkDuplicates Tracking 853137 as yet unmatched pairs. 45045 records in RAM.
INFO 2026-06-08 08:56:14 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr10:24,545,013
INFO 2026-06-08 08:56:14 MarkDuplicates Tracking 850611 as yet unmatched pairs. 42499 records in RAM.
INFO 2026-06-08 08:56:17 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 3s. Last read position: chr10:31,809,032
INFO 2026-06-08 08:56:17 MarkDuplicates Tracking 848279 as yet unmatched pairs. 40157 records in RAM.
INFO 2026-06-08 08:56:19 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr10:32,034,780
INFO 2026-06-08 08:56:19 MarkDuplicates Tracking 849088 as yet unmatched pairs. 40964 records in RAM.
INFO 2026-06-08 08:56:20 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr10:36,523,266
INFO 2026-06-08 08:56:20 MarkDuplicates Tracking 844752 as yet unmatched pairs. 36627 records in RAM.
INFO 2026-06-08 08:56:22 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr10:46,131,033
INFO 2026-06-08 08:56:22 MarkDuplicates Tracking 841433 as yet unmatched pairs. 33305 records in RAM.
INFO 2026-06-08 08:56:23 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr10:59,812,776
INFO 2026-06-08 08:56:23 MarkDuplicates Tracking 840232 as yet unmatched pairs. 32100 records in RAM.
INFO 2026-06-08 08:56:25 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr10:70,161,870
INFO 2026-06-08 08:56:25 MarkDuplicates Tracking 836951 as yet unmatched pairs. 28803 records in RAM.
INFO 2026-06-08 08:56:27 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr10:73,807,856
INFO 2026-06-08 08:56:27 MarkDuplicates Tracking 834385 as yet unmatched pairs. 26231 records in RAM.
INFO 2026-06-08 08:56:28 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr10:80,176,107
INFO 2026-06-08 08:56:28 MarkDuplicates Tracking 832163 as yet unmatched pairs. 24003 records in RAM.
INFO 2026-06-08 08:56:30 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 2s. Last read position: chr10:91,630,717
INFO 2026-06-08 08:56:30 MarkDuplicates Tracking 829442 as yet unmatched pairs. 21279 records in RAM.
INFO 2026-06-08 08:56:32 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr10:96,522,226
INFO 2026-06-08 08:56:32 MarkDuplicates Tracking 827615 as yet unmatched pairs. 19442 records in RAM.
INFO 2026-06-08 08:56:34 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr10:100,983,769
INFO 2026-06-08 08:56:34 MarkDuplicates Tracking 824390 as yet unmatched pairs. 16216 records in RAM.
INFO 2026-06-08 08:56:35 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr10:103,414,010
INFO 2026-06-08 08:56:35 MarkDuplicates Tracking 821622 as yet unmatched pairs. 13439 records in RAM.
INFO 2026-06-08 08:56:37 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr10:112,964,603
INFO 2026-06-08 08:56:37 MarkDuplicates Tracking 819636 as yet unmatched pairs. 11441 records in RAM.
INFO 2026-06-08 08:56:39 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr10:119,059,704
INFO 2026-06-08 08:56:39 MarkDuplicates Tracking 816969 as yet unmatched pairs. 8774 records in RAM.
INFO 2026-06-08 08:56:40 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr10:122,582,788
INFO 2026-06-08 08:56:40 MarkDuplicates Tracking 815317 as yet unmatched pairs. 7122 records in RAM.
INFO 2026-06-08 08:56:41 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr10:122,620,259
INFO 2026-06-08 08:56:41 MarkDuplicates Tracking 814070 as yet unmatched pairs. 5864 records in RAM.
INFO 2026-06-08 08:56:43 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr10:128,104,020
INFO 2026-06-08 08:56:43 MarkDuplicates Tracking 810748 as yet unmatched pairs. 2537 records in RAM.
INFO 2026-06-08 08:56:46 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 2s. Last read position: chr11:294,429
INFO 2026-06-08 08:56:46 MarkDuplicates Tracking 807932 as yet unmatched pairs. 98657 records in RAM.
INFO 2026-06-08 08:56:48 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:320,606
INFO 2026-06-08 08:56:48 MarkDuplicates Tracking 810474 as yet unmatched pairs. 101199 records in RAM.
INFO 2026-06-08 08:56:49 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:618,628
INFO 2026-06-08 08:56:49 MarkDuplicates Tracking 802719 as yet unmatched pairs. 93441 records in RAM.
INFO 2026-06-08 08:56:51 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:1,081,729
INFO 2026-06-08 08:56:51 MarkDuplicates Tracking 800018 as yet unmatched pairs. 90737 records in RAM.
INFO 2026-06-08 08:56:53 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:1,187,655
INFO 2026-06-08 08:56:53 MarkDuplicates Tracking 797432 as yet unmatched pairs. 88147 records in RAM.
INFO 2026-06-08 08:56:54 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,047
INFO 2026-06-08 08:56:54 MarkDuplicates Tracking 795802 as yet unmatched pairs. 86514 records in RAM.
INFO 2026-06-08 08:56:55 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,036
INFO 2026-06-08 08:56:55 MarkDuplicates Tracking 794580 as yet unmatched pairs. 85292 records in RAM.
INFO 2026-06-08 08:56:57 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr11:1,559,024
INFO 2026-06-08 08:56:57 MarkDuplicates Tracking 792610 as yet unmatched pairs. 83320 records in RAM.
INFO 2026-06-08 08:56:59 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:3,768,636
INFO 2026-06-08 08:56:59 MarkDuplicates Tracking 789723 as yet unmatched pairs. 80427 records in RAM.
INFO 2026-06-08 08:57:01 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 2s. Last read position: chr11:7,995,955
INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 787071 as yet unmatched pairs. 77759 records in RAM.
INFO 2026-06-08 08:57:03 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr11:10,802,307
INFO 2026-06-08 08:57:03 MarkDuplicates Tracking 784825 as yet unmatched pairs. 75506 records in RAM.
INFO 2026-06-08 08:57:04 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:17,075,465
INFO 2026-06-08 08:57:04 MarkDuplicates Tracking 782976 as yet unmatched pairs. 73656 records in RAM.
INFO 2026-06-08 08:57:06 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:32,588,719
INFO 2026-06-08 08:57:06 MarkDuplicates Tracking 779562 as yet unmatched pairs. 70237 records in RAM.
INFO 2026-06-08 08:57:08 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr11:35,663,474
INFO 2026-06-08 08:57:08 MarkDuplicates Tracking 776694 as yet unmatched pairs. 67367 records in RAM.
INFO 2026-06-08 08:57:09 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:46,542,621
INFO 2026-06-08 08:57:09 MarkDuplicates Tracking 774175 as yet unmatched pairs. 64843 records in RAM.
INFO 2026-06-08 08:57:11 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:47,821,779
INFO 2026-06-08 08:57:11 MarkDuplicates Tracking 771519 as yet unmatched pairs. 62164 records in RAM.
INFO 2026-06-08 08:57:13 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:57,814,345
INFO 2026-06-08 08:57:13 MarkDuplicates Tracking 769176 as yet unmatched pairs. 59820 records in RAM.
INFO 2026-06-08 08:57:14 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:61,322,401
INFO 2026-06-08 08:57:14 MarkDuplicates Tracking 766429 as yet unmatched pairs. 57072 records in RAM.
INFO 2026-06-08 08:57:16 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:62,518,031
INFO 2026-06-08 08:57:16 MarkDuplicates Tracking 764244 as yet unmatched pairs. 54877 records in RAM.
INFO 2026-06-08 08:57:17 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr11:62,559,810
INFO 2026-06-08 08:57:17 MarkDuplicates Tracking 762269 as yet unmatched pairs. 52893 records in RAM.
INFO 2026-06-08 08:57:19 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr11:62,888,625
INFO 2026-06-08 08:57:19 MarkDuplicates Tracking 759253 as yet unmatched pairs. 49877 records in RAM.
INFO 2026-06-08 08:57:21 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:64,321,609
INFO 2026-06-08 08:57:21 MarkDuplicates Tracking 755852 as yet unmatched pairs. 46473 records in RAM.
INFO 2026-06-08 08:57:23 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr11:65,130,735
INFO 2026-06-08 08:57:23 MarkDuplicates Tracking 753036 as yet unmatched pairs. 43651 records in RAM.
INFO 2026-06-08 08:57:25 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:65,654,387
INFO 2026-06-08 08:57:25 MarkDuplicates Tracking 750064 as yet unmatched pairs. 40643 records in RAM.
INFO 2026-06-08 08:57:26 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr11:66,216,562
INFO 2026-06-08 08:57:26 MarkDuplicates Tracking 746688 as yet unmatched pairs. 37267 records in RAM.
INFO 2026-06-08 08:57:28 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr11:67,250,695
INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 743786 as yet unmatched pairs. 34364 records in RAM.
INFO 2026-06-08 08:57:29 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:68,049,099
INFO 2026-06-08 08:57:29 MarkDuplicates Tracking 741517 as yet unmatched pairs. 32086 records in RAM.
INFO 2026-06-08 08:57:31 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr11:69,648,028
INFO 2026-06-08 08:57:31 MarkDuplicates Tracking 739179 as yet unmatched pairs. 29745 records in RAM.
INFO 2026-06-08 08:57:32 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr11:72,228,195
INFO 2026-06-08 08:57:32 MarkDuplicates Tracking 735215 as yet unmatched pairs. 25781 records in RAM.
INFO 2026-06-08 08:57:34 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr11:75,162,732
INFO 2026-06-08 08:57:34 MarkDuplicates Tracking 732289 as yet unmatched pairs. 22854 records in RAM.
INFO 2026-06-08 08:57:36 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr11:78,104,395
INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 730254 as yet unmatched pairs. 20813 records in RAM.
INFO 2026-06-08 08:57:38 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr11:93,729,870
INFO 2026-06-08 08:57:38 MarkDuplicates Tracking 727246 as yet unmatched pairs. 17799 records in RAM.
INFO 2026-06-08 08:57:39 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr11:102,398,877
INFO 2026-06-08 08:57:39 MarkDuplicates Tracking 725608 as yet unmatched pairs. 16152 records in RAM.
INFO 2026-06-08 08:57:41 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr11:110,430,108
INFO 2026-06-08 08:57:41 MarkDuplicates Tracking 722381 as yet unmatched pairs. 12920 records in RAM.
INFO 2026-06-08 08:57:43 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr11:118,304,925
INFO 2026-06-08 08:57:43 MarkDuplicates Tracking 719864 as yet unmatched pairs. 10400 records in RAM.
INFO 2026-06-08 08:57:44 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr11:119,047,958
INFO 2026-06-08 08:57:44 MarkDuplicates Tracking 717370 as yet unmatched pairs. 7902 records in RAM.
INFO 2026-06-08 08:57:46 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr11:123,058,293
INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 715350 as yet unmatched pairs. 5877 records in RAM.
INFO 2026-06-08 08:57:47 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:126,413,600
INFO 2026-06-08 08:57:47 MarkDuplicates Tracking 712410 as yet unmatched pairs. 2928 records in RAM.
INFO 2026-06-08 08:57:49 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr11:134,251,162
INFO 2026-06-08 08:57:49 MarkDuplicates Tracking 709743 as yet unmatched pairs. 257 records in RAM.
INFO 2026-06-08 08:57:51 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 2s. Last read position: chr12:2,872,134
INFO 2026-06-08 08:57:51 MarkDuplicates Tracking 707445 as yet unmatched pairs. 78818 records in RAM.
INFO 2026-06-08 08:57:53 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr12:6,390,734
INFO 2026-06-08 08:57:53 MarkDuplicates Tracking 704647 as yet unmatched pairs. 76018 records in RAM.
INFO 2026-06-08 08:57:54 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:6,935,728
INFO 2026-06-08 08:57:54 MarkDuplicates Tracking 701932 as yet unmatched pairs. 73301 records in RAM.
INFO 2026-06-08 08:57:56 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr12:9,072,767
INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 699913 as yet unmatched pairs. 71282 records in RAM.
INFO 2026-06-08 08:57:58 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr12:12,827,291
INFO 2026-06-08 08:57:58 MarkDuplicates Tracking 697152 as yet unmatched pairs. 68517 records in RAM.
INFO 2026-06-08 08:58:00 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr12:21,894,099
INFO 2026-06-08 08:58:00 MarkDuplicates Tracking 694776 as yet unmatched pairs. 66140 records in RAM.
INFO 2026-06-08 08:58:01 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr12:32,755,629
INFO 2026-06-08 08:58:01 MarkDuplicates Tracking 692307 as yet unmatched pairs. 63663 records in RAM.
INFO 2026-06-08 08:58:03 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 2s. Last read position: chr12:47,965,934
INFO 2026-06-08 08:58:03 MarkDuplicates Tracking 690127 as yet unmatched pairs. 61479 records in RAM.
INFO 2026-06-08 08:58:05 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr12:49,051,966
INFO 2026-06-08 08:58:05 MarkDuplicates Tracking 687481 as yet unmatched pairs. 58830 records in RAM.
INFO 2026-06-08 08:58:07 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr12:49,565,475
INFO 2026-06-08 08:58:07 MarkDuplicates Tracking 685445 as yet unmatched pairs. 56791 records in RAM.
INFO 2026-06-08 08:58:08 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr12:51,364,143
INFO 2026-06-08 08:58:08 MarkDuplicates Tracking 682994 as yet unmatched pairs. 54329 records in RAM.
INFO 2026-06-08 08:58:10 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr12:53,039,654
INFO 2026-06-08 08:58:10 MarkDuplicates Tracking 680722 as yet unmatched pairs. 52056 records in RAM.
INFO 2026-06-08 08:58:11 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr12:53,665,269
INFO 2026-06-08 08:58:11 MarkDuplicates Tracking 678809 as yet unmatched pairs. 50137 records in RAM.
INFO 2026-06-08 08:58:13 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr12:55,800,885
INFO 2026-06-08 08:58:13 MarkDuplicates Tracking 675536 as yet unmatched pairs. 46863 records in RAM.
INFO 2026-06-08 08:58:14 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr12:56,224,747
INFO 2026-06-08 08:58:14 MarkDuplicates Tracking 673054 as yet unmatched pairs. 44379 records in RAM.
INFO 2026-06-08 08:58:16 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr12:56,688,029
INFO 2026-06-08 08:58:16 MarkDuplicates Tracking 670854 as yet unmatched pairs. 42178 records in RAM.
INFO 2026-06-08 08:58:18 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr12:57,104,414
INFO 2026-06-08 08:58:18 MarkDuplicates Tracking 669979 as yet unmatched pairs. 41303 records in RAM.
INFO 2026-06-08 08:58:19 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr12:57,258,012
INFO 2026-06-08 08:58:19 MarkDuplicates Tracking 665551 as yet unmatched pairs. 36869 records in RAM.
INFO 2026-06-08 08:58:21 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr12:62,549,814
INFO 2026-06-08 08:58:21 MarkDuplicates Tracking 662683 as yet unmatched pairs. 34000 records in RAM.
INFO 2026-06-08 08:58:23 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr12:69,259,434
INFO 2026-06-08 08:58:23 MarkDuplicates Tracking 660532 as yet unmatched pairs. 31846 records in RAM.
INFO 2026-06-08 08:58:24 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr12:76,807,857
INFO 2026-06-08 08:58:24 MarkDuplicates Tracking 657971 as yet unmatched pairs. 29275 records in RAM.
INFO 2026-06-08 08:58:26 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr12:95,266,398
INFO 2026-06-08 08:58:26 MarkDuplicates Tracking 655779 as yet unmatched pairs. 27074 records in RAM.
INFO 2026-06-08 08:58:28 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr12:103,938,437
INFO 2026-06-08 08:58:28 MarkDuplicates Tracking 653593 as yet unmatched pairs. 24881 records in RAM.
INFO 2026-06-08 08:58:30 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr12:108,623,760
INFO 2026-06-08 08:58:30 MarkDuplicates Tracking 651141 as yet unmatched pairs. 22427 records in RAM.
INFO 2026-06-08 08:58:32 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 2s. Last read position: chr12:111,456,190
INFO 2026-06-08 08:58:32 MarkDuplicates Tracking 648212 as yet unmatched pairs. 19496 records in RAM.
INFO 2026-06-08 08:58:34 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr12:112,941,664
INFO 2026-06-08 08:58:34 MarkDuplicates Tracking 646529 as yet unmatched pairs. 17808 records in RAM.
INFO 2026-06-08 08:58:35 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr12:118,246,176
INFO 2026-06-08 08:58:35 MarkDuplicates Tracking 643018 as yet unmatched pairs. 14291 records in RAM.
INFO 2026-06-08 08:58:37 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr12:120,978,734
INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 640255 as yet unmatched pairs. 11523 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr12:122,544,215
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 637746 as yet unmatched pairs. 9013 records in RAM.
INFO 2026-06-08 08:58:40 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr12:124,337,010
INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 635720 as yet unmatched pairs. 6985 records in RAM.
INFO 2026-06-08 08:58:42 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr12:131,910,291
INFO 2026-06-08 08:58:42 MarkDuplicates Tracking 632281 as yet unmatched pairs. 3543 records in RAM.
INFO 2026-06-08 08:58:44 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr12:132,808,187
INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 629253 as yet unmatched pairs. 508 records in RAM.
INFO 2026-06-08 08:58:46 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 2s. Last read position: chr13:20,800,263
INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 627147 as yet unmatched pairs. 32416 records in RAM.
INFO 2026-06-08 08:58:47 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr13:27,256,186
INFO 2026-06-08 08:58:47 MarkDuplicates Tracking 625007 as yet unmatched pairs. 30271 records in RAM.
INFO 2026-06-08 08:58:49 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr13:31,138,473
INFO 2026-06-08 08:58:49 MarkDuplicates Tracking 622855 as yet unmatched pairs. 28118 records in RAM.
INFO 2026-06-08 08:58:50 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr13:39,023,076
INFO 2026-06-08 08:58:50 MarkDuplicates Tracking 620241 as yet unmatched pairs. 25495 records in RAM.
INFO 2026-06-08 08:58:52 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr13:45,132,433
INFO 2026-06-08 08:58:52 MarkDuplicates Tracking 617624 as yet unmatched pairs. 22871 records in RAM.
INFO 2026-06-08 08:58:53 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr13:49,201,835
INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 614892 as yet unmatched pairs. 20134 records in RAM.
INFO 2026-06-08 08:58:55 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr13:53,042,114
INFO 2026-06-08 08:58:55 MarkDuplicates Tracking 613677 as yet unmatched pairs. 18910 records in RAM.
INFO 2026-06-08 08:58:57 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr13:75,362,105
INFO 2026-06-08 08:58:57 MarkDuplicates Tracking 611037 as yet unmatched pairs. 16268 records in RAM.
INFO 2026-06-08 08:58:58 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr13:95,073,265
INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 607729 as yet unmatched pairs. 12958 records in RAM.
INFO 2026-06-08 08:59:00 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr13:100,112,030
INFO 2026-06-08 08:59:00 MarkDuplicates Tracking 605038 as yet unmatched pairs. 10260 records in RAM.
INFO 2026-06-08 08:59:01 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr13:110,187,320
INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 602664 as yet unmatched pairs. 7885 records in RAM.
INFO 2026-06-08 08:59:03 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr13:110,482,523
INFO 2026-06-08 08:59:03 MarkDuplicates Tracking 599950 as yet unmatched pairs. 5165 records in RAM.
INFO 2026-06-08 08:59:04 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr13:113,309,785
INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 597534 as yet unmatched pairs. 2730 records in RAM.
INFO 2026-06-08 08:59:06 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr14:21,211,489
INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 593957 as yet unmatched pairs. 48316 records in RAM.
INFO 2026-06-08 08:59:08 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr14:23,064,119
INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 591228 as yet unmatched pairs. 45579 records in RAM.
INFO 2026-06-08 08:59:09 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr14:24,270,005
INFO 2026-06-08 08:59:09 MarkDuplicates Tracking 588486 as yet unmatched pairs. 42820 records in RAM.
INFO 2026-06-08 08:59:11 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr14:35,313,036
INFO 2026-06-08 08:59:11 MarkDuplicates Tracking 586470 as yet unmatched pairs. 40801 records in RAM.
INFO 2026-06-08 08:59:13 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr14:50,446,093
INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 583859 as yet unmatched pairs. 38178 records in RAM.
INFO 2026-06-08 08:59:14 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr14:55,649,802
INFO 2026-06-08 08:59:14 MarkDuplicates Tracking 581533 as yet unmatched pairs. 35848 records in RAM.
INFO 2026-06-08 08:59:16 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr14:64,232,914
INFO 2026-06-08 08:59:16 MarkDuplicates Tracking 578611 as yet unmatched pairs. 32920 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr14:68,885,445
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 577242 as yet unmatched pairs. 31548 records in RAM.
INFO 2026-06-08 08:59:19 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr14:73,729,901
INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 573456 as yet unmatched pairs. 27755 records in RAM.
INFO 2026-06-08 08:59:21 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr14:77,459,696
INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 570944 as yet unmatched pairs. 25239 records in RAM.
INFO 2026-06-08 08:59:22 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr14:92,651,972
INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 567981 as yet unmatched pairs. 22274 records in RAM.
INFO 2026-06-08 08:59:24 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr14:99,502,813
INFO 2026-06-08 08:59:24 MarkDuplicates Tracking 565584 as yet unmatched pairs. 19860 records in RAM.
INFO 2026-06-08 08:59:25 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr14:102,084,781
INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 562781 as yet unmatched pairs. 17047 records in RAM.
INFO 2026-06-08 08:59:27 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr14:104,714,795
INFO 2026-06-08 08:59:27 MarkDuplicates Tracking 560390 as yet unmatched pairs. 14646 records in RAM.
INFO 2026-06-08 08:59:28 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr14:105,587,136
INFO 2026-06-08 08:59:28 MarkDuplicates Tracking 564614 as yet unmatched pairs. 18855 records in RAM.
INFO 2026-06-08 08:59:30 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr14:105,588,252
INFO 2026-06-08 08:59:30 MarkDuplicates Tracking 564200 as yet unmatched pairs. 18438 records in RAM.
INFO 2026-06-08 08:59:32 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,810
INFO 2026-06-08 08:59:32 MarkDuplicates Tracking 552980 as yet unmatched pairs. 7216 records in RAM.
INFO 2026-06-08 08:59:34 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 2s. Last read position: chr14:105,707,364
INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 556609 as yet unmatched pairs. 10840 records in RAM.
INFO 2026-06-08 08:59:35 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,601
INFO 2026-06-08 08:59:35 MarkDuplicates Tracking 551544 as yet unmatched pairs. 5775 records in RAM.
INFO 2026-06-08 08:59:37 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr14:105,856,075
INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 546348 as yet unmatched pairs. 578 records in RAM.
INFO 2026-06-08 08:59:39 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr15:29,708,815
INFO 2026-06-08 08:59:39 MarkDuplicates Tracking 544278 as yet unmatched pairs. 39213 records in RAM.
INFO 2026-06-08 08:59:40 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr15:34,529,066
INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 541902 as yet unmatched pairs. 36835 records in RAM.
INFO 2026-06-08 08:59:42 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr15:40,873,107
INFO 2026-06-08 08:59:42 MarkDuplicates Tracking 539304 as yet unmatched pairs. 34227 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr15:42,529,738
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 536858 as yet unmatched pairs. 31781 records in RAM.
INFO 2026-06-08 08:59:45 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr15:43,793,709
INFO 2026-06-08 08:59:45 MarkDuplicates Tracking 536342 as yet unmatched pairs. 31265 records in RAM.
INFO 2026-06-08 08:59:46 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr15:45,153,384
INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 531774 as yet unmatched pairs. 26696 records in RAM.
INFO 2026-06-08 08:59:48 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr15:52,505,590
INFO 2026-06-08 08:59:48 MarkDuplicates Tracking 529071 as yet unmatched pairs. 23991 records in RAM.
INFO 2026-06-08 08:59:50 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr15:59,768,809
INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 526551 as yet unmatched pairs. 21470 records in RAM.
INFO 2026-06-08 08:59:51 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr15:64,156,108
INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 525043 as yet unmatched pairs. 19961 records in RAM.
INFO 2026-06-08 08:59:53 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr15:68,218,583
INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 521532 as yet unmatched pairs. 16449 records in RAM.
INFO 2026-06-08 08:59:54 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr15:73,298,389
INFO 2026-06-08 08:59:54 MarkDuplicates Tracking 518999 as yet unmatched pairs. 13906 records in RAM.
INFO 2026-06-08 08:59:56 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr15:75,207,594
INFO 2026-06-08 08:59:56 MarkDuplicates Tracking 516202 as yet unmatched pairs. 11101 records in RAM.
INFO 2026-06-08 08:59:57 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr15:78,771,760
INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 513271 as yet unmatched pairs. 8164 records in RAM.
INFO 2026-06-08 08:59:59 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr15:85,206,745
INFO 2026-06-08 08:59:59 MarkDuplicates Tracking 511131 as yet unmatched pairs. 6019 records in RAM.
INFO 2026-06-08 09:00:00 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr15:89,328,996
INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 509534 as yet unmatched pairs. 4422 records in RAM.
INFO 2026-06-08 09:00:02 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr15:92,944,420
INFO 2026-06-08 09:00:02 MarkDuplicates Tracking 506945 as yet unmatched pairs. 1833 records in RAM.
INFO 2026-06-08 09:00:04 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 2s. Last read position: chr16:370,005
INFO 2026-06-08 09:00:04 MarkDuplicates Tracking 504171 as yet unmatched pairs. 79132 records in RAM.
INFO 2026-06-08 09:00:06 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr16:1,218,268
INFO 2026-06-08 09:00:06 MarkDuplicates Tracking 500804 as yet unmatched pairs. 75760 records in RAM.
INFO 2026-06-08 09:00:07 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr16:2,000,244
INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 498030 as yet unmatched pairs. 72986 records in RAM.
INFO 2026-06-08 09:00:09 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr16:2,577,445
INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 494634 as yet unmatched pairs. 69588 records in RAM.
INFO 2026-06-08 09:00:10 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr16:2,767,273
INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 492819 as yet unmatched pairs. 67772 records in RAM.
INFO 2026-06-08 09:00:12 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr16:3,597,669
INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 489371 as yet unmatched pairs. 64324 records in RAM.
INFO 2026-06-08 09:00:14 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 2s. Last read position: chr16:4,876,884
INFO 2026-06-08 09:00:14 MarkDuplicates Tracking 486723 as yet unmatched pairs. 61676 records in RAM.
INFO 2026-06-08 09:00:16 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr16:11,927,776
INFO 2026-06-08 09:00:16 MarkDuplicates Tracking 485268 as yet unmatched pairs. 60221 records in RAM.
INFO 2026-06-08 09:00:17 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr16:14,945,621
INFO 2026-06-08 09:00:17 MarkDuplicates Tracking 482962 as yet unmatched pairs. 57914 records in RAM.
INFO 2026-06-08 09:00:19 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr16:16,267,057
INFO 2026-06-08 09:00:19 MarkDuplicates Tracking 480578 as yet unmatched pairs. 55522 records in RAM.
INFO 2026-06-08 09:00:20 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:18,339,814
INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 480074 as yet unmatched pairs. 55018 records in RAM.
INFO 2026-06-08 09:00:22 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:18,809,429
INFO 2026-06-08 09:00:22 MarkDuplicates Tracking 478920 as yet unmatched pairs. 53863 records in RAM.
INFO 2026-06-08 09:00:23 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr16:21,403,939
INFO 2026-06-08 09:00:23 MarkDuplicates Tracking 478355 as yet unmatched pairs. 53290 records in RAM.
INFO 2026-06-08 09:00:24 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:21,802,610
INFO 2026-06-08 09:00:24 MarkDuplicates Tracking 475906 as yet unmatched pairs. 50838 records in RAM.
INFO 2026-06-08 09:00:26 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:21,911,257
INFO 2026-06-08 09:00:26 MarkDuplicates Tracking 475197 as yet unmatched pairs. 50126 records in RAM.
INFO 2026-06-08 09:00:27 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,077
INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 474788 as yet unmatched pairs. 49717 records in RAM.
INFO 2026-06-08 09:00:28 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr16:24,777,244
INFO 2026-06-08 09:00:28 MarkDuplicates Tracking 472941 as yet unmatched pairs. 47865 records in RAM.
INFO 2026-06-08 09:00:30 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr16:28,489,367
INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 470586 as yet unmatched pairs. 45502 records in RAM.
INFO 2026-06-08 09:00:31 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr16:29,381,507
INFO 2026-06-08 09:00:31 MarkDuplicates Tracking 468488 as yet unmatched pairs. 43402 records in RAM.
INFO 2026-06-08 09:00:32 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr16:29,485,470
INFO 2026-06-08 09:00:32 MarkDuplicates Tracking 468630 as yet unmatched pairs. 43544 records in RAM.
INFO 2026-06-08 09:00:34 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr16:29,859,288
INFO 2026-06-08 09:00:34 MarkDuplicates Tracking 466104 as yet unmatched pairs. 41018 records in RAM.
INFO 2026-06-08 09:00:35 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:30,224,645
INFO 2026-06-08 09:00:35 MarkDuplicates Tracking 463517 as yet unmatched pairs. 38428 records in RAM.
INFO 2026-06-08 09:00:36 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr16:30,664,837
INFO 2026-06-08 09:00:36 MarkDuplicates Tracking 461680 as yet unmatched pairs. 36591 records in RAM.
INFO 2026-06-08 09:00:38 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:31,109,349
INFO 2026-06-08 09:00:38 MarkDuplicates Tracking 459016 as yet unmatched pairs. 33927 records in RAM.
INFO 2026-06-08 09:00:40 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 2s. Last read position: chr16:31,381,005
INFO 2026-06-08 09:00:40 MarkDuplicates Tracking 456568 as yet unmatched pairs. 31478 records in RAM.
INFO 2026-06-08 09:00:42 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr16:52,439,655
INFO 2026-06-08 09:00:42 MarkDuplicates Tracking 453880 as yet unmatched pairs. 28779 records in RAM.
INFO 2026-06-08 09:00:44 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 2s. Last read position: chr16:57,127,847
INFO 2026-06-08 09:00:44 MarkDuplicates Tracking 451323 as yet unmatched pairs. 26219 records in RAM.
INFO 2026-06-08 09:00:47 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 2s. Last read position: chr16:64,998,614
INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 448761 as yet unmatched pairs. 23657 records in RAM.
INFO 2026-06-08 09:00:48 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr16:67,647,136
INFO 2026-06-08 09:00:48 MarkDuplicates Tracking 445828 as yet unmatched pairs. 20716 records in RAM.
INFO 2026-06-08 09:00:50 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr16:69,118,376
INFO 2026-06-08 09:00:50 MarkDuplicates Tracking 443434 as yet unmatched pairs. 18320 records in RAM.
INFO 2026-06-08 09:00:52 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr16:70,366,094
INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 440905 as yet unmatched pairs. 15786 records in RAM.
INFO 2026-06-08 09:00:53 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr16:74,332,604
INFO 2026-06-08 09:00:53 MarkDuplicates Tracking 438273 as yet unmatched pairs. 13152 records in RAM.
INFO 2026-06-08 09:00:55 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr16:81,999,862
INFO 2026-06-08 09:00:55 MarkDuplicates Tracking 435331 as yet unmatched pairs. 10205 records in RAM.
INFO 2026-06-08 09:00:56 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:87,418,847
INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 432668 as yet unmatched pairs. 7540 records in RAM.
INFO 2026-06-08 09:00:58 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr16:88,733,984
INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 429731 as yet unmatched pairs. 4600 records in RAM.
INFO 2026-06-08 09:00:59 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr16:89,693,288
INFO 2026-06-08 09:00:59 MarkDuplicates Tracking 426623 as yet unmatched pairs. 1489 records in RAM.
INFO 2026-06-08 09:01:02 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 2s. Last read position: chr17:1,361,272
INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 426354 as yet unmatched pairs. 133072 records in RAM.
INFO 2026-06-08 09:01:04 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr17:2,292,883
INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 421144 as yet unmatched pairs. 127860 records in RAM.
INFO 2026-06-08 09:01:05 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr17:4,558,799
INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 418316 as yet unmatched pairs. 125032 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr17:5,434,920
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 415916 as yet unmatched pairs. 122632 records in RAM.
INFO 2026-06-08 09:01:08 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr17:7,349,040
INFO 2026-06-08 09:01:08 MarkDuplicates Tracking 412992 as yet unmatched pairs. 119706 records in RAM.
INFO 2026-06-08 09:01:10 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr17:7,846,597
INFO 2026-06-08 09:01:10 MarkDuplicates Tracking 410894 as yet unmatched pairs. 117607 records in RAM.
INFO 2026-06-08 09:01:12 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr17:15,628,963
INFO 2026-06-08 09:01:12 MarkDuplicates Tracking 408178 as yet unmatched pairs. 114882 records in RAM.
INFO 2026-06-08 09:01:13 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr17:17,794,627
INFO 2026-06-08 09:01:13 MarkDuplicates Tracking 405341 as yet unmatched pairs. 112044 records in RAM.
INFO 2026-06-08 09:01:15 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr17:20,260,226
INFO 2026-06-08 09:01:15 MarkDuplicates Tracking 402720 as yet unmatched pairs. 109421 records in RAM.
INFO 2026-06-08 09:01:17 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 2s. Last read position: chr17:28,592,449
INFO 2026-06-08 09:01:17 MarkDuplicates Tracking 400491 as yet unmatched pairs. 107192 records in RAM.
INFO 2026-06-08 09:01:20 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 2s. Last read position: chr17:29,166,318
INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 398201 as yet unmatched pairs. 104902 records in RAM.
INFO 2026-06-08 09:01:21 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr17:31,330,392
INFO 2026-06-08 09:01:21 MarkDuplicates Tracking 395351 as yet unmatched pairs. 102051 records in RAM.
INFO 2026-06-08 09:01:23 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr17:35,605,704
INFO 2026-06-08 09:01:23 MarkDuplicates Tracking 393313 as yet unmatched pairs. 100013 records in RAM.
INFO 2026-06-08 09:01:24 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr17:37,143,723
INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 390597 as yet unmatched pairs. 97297 records in RAM.
INFO 2026-06-08 09:01:26 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr17:38,850,103
INFO 2026-06-08 09:01:26 MarkDuplicates Tracking 390751 as yet unmatched pairs. 97450 records in RAM.
INFO 2026-06-08 09:01:28 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr17:39,708,395
INFO 2026-06-08 09:01:28 MarkDuplicates Tracking 386585 as yet unmatched pairs. 93283 records in RAM.
INFO 2026-06-08 09:01:29 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr17:40,122,686
INFO 2026-06-08 09:01:29 MarkDuplicates Tracking 383038 as yet unmatched pairs. 89732 records in RAM.
INFO 2026-06-08 09:01:31 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr17:41,689,782
INFO 2026-06-08 09:01:31 MarkDuplicates Tracking 380954 as yet unmatched pairs. 87644 records in RAM.
INFO 2026-06-08 09:01:32 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr17:42,325,016
INFO 2026-06-08 09:01:32 MarkDuplicates Tracking 378214 as yet unmatched pairs. 84901 records in RAM.
INFO 2026-06-08 09:01:34 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr17:43,523,709
INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 374832 as yet unmatched pairs. 81517 records in RAM.
INFO 2026-06-08 09:01:36 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr17:44,398,021
INFO 2026-06-08 09:01:36 MarkDuplicates Tracking 372166 as yet unmatched pairs. 78850 records in RAM.
INFO 2026-06-08 09:01:37 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr17:46,514,388
INFO 2026-06-08 09:01:37 MarkDuplicates Tracking 369595 as yet unmatched pairs. 76274 records in RAM.
INFO 2026-06-08 09:03:36 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 118s. Last read position: chr17:48,551,962
INFO 2026-06-08 09:03:36 MarkDuplicates Tracking 367413 as yet unmatched pairs. 74089 records in RAM.
INFO 2026-06-08 09:03:38 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 2s. Last read position: chr17:50,185,806
INFO 2026-06-08 09:03:38 MarkDuplicates Tracking 366508 as yet unmatched pairs. 73182 records in RAM.
INFO 2026-06-08 09:03:40 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:28s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,073
INFO 2026-06-08 09:03:40 MarkDuplicates Tracking 379157 as yet unmatched pairs. 85828 records in RAM.
INFO 2026-06-08 09:03:42 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,760
INFO 2026-06-08 09:03:42 MarkDuplicates Tracking 367029 as yet unmatched pairs. 73699 records in RAM.
INFO 2026-06-08 09:03:43 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,519
INFO 2026-06-08 09:03:43 MarkDuplicates Tracking 376980 as yet unmatched pairs. 83640 records in RAM.
INFO 2026-06-08 09:03:45 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,596
INFO 2026-06-08 09:03:45 MarkDuplicates Tracking 357344 as yet unmatched pairs. 64003 records in RAM.
INFO 2026-06-08 09:03:47 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,831
INFO 2026-06-08 09:03:47 MarkDuplicates Tracking 364715 as yet unmatched pairs. 71367 records in RAM.
INFO 2026-06-08 09:03:48 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,424
INFO 2026-06-08 09:03:48 MarkDuplicates Tracking 362113 as yet unmatched pairs. 68765 records in RAM.
INFO 2026-06-08 09:03:50 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,624
INFO 2026-06-08 09:03:50 MarkDuplicates Tracking 362501 as yet unmatched pairs. 69153 records in RAM.
INFO 2026-06-08 09:03:52 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,647
INFO 2026-06-08 09:03:52 MarkDuplicates Tracking 356852 as yet unmatched pairs. 63501 records in RAM.
INFO 2026-06-08 09:03:53 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,235
INFO 2026-06-08 09:03:53 MarkDuplicates Tracking 342754 as yet unmatched pairs. 49401 records in RAM.
INFO 2026-06-08 09:03:55 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr17:50,388,060
INFO 2026-06-08 09:03:55 MarkDuplicates Tracking 335214 as yet unmatched pairs. 41855 records in RAM.
INFO 2026-06-08 09:03:57 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 1s. Last read position: chr17:57,106,114
INFO 2026-06-08 09:03:57 MarkDuplicates Tracking 332073 as yet unmatched pairs. 38714 records in RAM.
INFO 2026-06-08 09:03:58 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr17:59,644,483
INFO 2026-06-08 09:03:58 MarkDuplicates Tracking 333112 as yet unmatched pairs. 39752 records in RAM.
INFO 2026-06-08 09:04:00 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr17:59,690,677
INFO 2026-06-08 09:04:00 MarkDuplicates Tracking 327252 as yet unmatched pairs. 33892 records in RAM.
INFO 2026-06-08 09:04:01 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chr17:63,754,492
INFO 2026-06-08 09:04:01 MarkDuplicates Tracking 324281 as yet unmatched pairs. 30919 records in RAM.
INFO 2026-06-08 09:04:03 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr17:65,537,493
INFO 2026-06-08 09:04:03 MarkDuplicates Tracking 321999 as yet unmatched pairs. 28626 records in RAM.
INFO 2026-06-08 09:04:05 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chr17:68,529,930
INFO 2026-06-08 09:04:05 MarkDuplicates Tracking 320028 as yet unmatched pairs. 26654 records in RAM.
INFO 2026-06-08 09:04:06 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr17:75,320,377
INFO 2026-06-08 09:04:06 MarkDuplicates Tracking 316952 as yet unmatched pairs. 23576 records in RAM.
INFO 2026-06-08 09:04:08 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 2s. Last read position: chr17:75,754,591
INFO 2026-06-08 09:04:08 MarkDuplicates Tracking 313621 as yet unmatched pairs. 20245 records in RAM.
INFO 2026-06-08 09:04:10 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr17:76,680,841
INFO 2026-06-08 09:04:10 MarkDuplicates Tracking 310574 as yet unmatched pairs. 17192 records in RAM.
INFO 2026-06-08 09:04:12 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr17:78,971,654
INFO 2026-06-08 09:04:12 MarkDuplicates Tracking 307743 as yet unmatched pairs. 14360 records in RAM.
INFO 2026-06-08 09:04:14 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr17:80,332,509
INFO 2026-06-08 09:04:14 MarkDuplicates Tracking 304995 as yet unmatched pairs. 11612 records in RAM.
INFO 2026-06-08 09:04:16 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 2s. Last read position: chr17:81,445,549
INFO 2026-06-08 09:04:16 MarkDuplicates Tracking 301868 as yet unmatched pairs. 8479 records in RAM.
INFO 2026-06-08 09:04:18 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr17:81,855,530
INFO 2026-06-08 09:04:18 MarkDuplicates Tracking 300078 as yet unmatched pairs. 6686 records in RAM.
INFO 2026-06-08 09:04:19 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr17:82,087,185
INFO 2026-06-08 09:04:19 MarkDuplicates Tracking 296263 as yet unmatched pairs. 2865 records in RAM.
INFO 2026-06-08 09:04:21 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr18:2,700,872
INFO 2026-06-08 09:04:21 MarkDuplicates Tracking 293197 as yet unmatched pairs. 12934 records in RAM.
INFO 2026-06-08 09:04:22 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr18:12,963,168
INFO 2026-06-08 09:04:22 MarkDuplicates Tracking 290644 as yet unmatched pairs. 10375 records in RAM.
INFO 2026-06-08 09:04:24 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 1s. Last read position: chr18:31,546,202
INFO 2026-06-08 09:04:24 MarkDuplicates Tracking 288055 as yet unmatched pairs. 7777 records in RAM.
INFO 2026-06-08 09:04:25 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr18:49,835,375
INFO 2026-06-08 09:04:25 MarkDuplicates Tracking 285817 as yet unmatched pairs. 5529 records in RAM.
INFO 2026-06-08 09:04:27 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr18:59,355,545
INFO 2026-06-08 09:04:27 MarkDuplicates Tracking 283162 as yet unmatched pairs. 2865 records in RAM.
INFO 2026-06-08 09:04:29 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr18:80,137,858
INFO 2026-06-08 09:04:29 MarkDuplicates Tracking 280531 as yet unmatched pairs. 230 records in RAM.
INFO 2026-06-08 09:04:31 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 2s. Last read position: chr19:947,483
INFO 2026-06-08 09:04:31 MarkDuplicates Tracking 277358 as yet unmatched pairs. 113132 records in RAM.
INFO 2026-06-08 09:04:33 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr19:1,295,736
INFO 2026-06-08 09:04:33 MarkDuplicates Tracking 274172 as yet unmatched pairs. 109946 records in RAM.
INFO 2026-06-08 09:04:34 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr19:2,040,158
INFO 2026-06-08 09:04:34 MarkDuplicates Tracking 271157 as yet unmatched pairs. 106930 records in RAM.
INFO 2026-06-08 09:04:36 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr19:3,053,777
INFO 2026-06-08 09:04:36 MarkDuplicates Tracking 268144 as yet unmatched pairs. 103914 records in RAM.
INFO 2026-06-08 09:04:38 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr19:4,327,212
INFO 2026-06-08 09:04:38 MarkDuplicates Tracking 264768 as yet unmatched pairs. 100536 records in RAM.
INFO 2026-06-08 09:04:40 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 2s. Last read position: chr19:5,708,310
INFO 2026-06-08 09:04:40 MarkDuplicates Tracking 261878 as yet unmatched pairs. 97645 records in RAM.
INFO 2026-06-08 09:04:42 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 2s. Last read position: chr19:7,083,045
INFO 2026-06-08 09:04:42 MarkDuplicates Tracking 259216 as yet unmatched pairs. 94980 records in RAM.
INFO 2026-06-08 09:04:44 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr19:8,471,326
INFO 2026-06-08 09:04:44 MarkDuplicates Tracking 256286 as yet unmatched pairs. 92048 records in RAM.
INFO 2026-06-08 09:04:45 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr19:10,350,857
INFO 2026-06-08 09:04:45 MarkDuplicates Tracking 253270 as yet unmatched pairs. 89032 records in RAM.
INFO 2026-06-08 09:04:47 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr19:10,987,846
INFO 2026-06-08 09:04:47 MarkDuplicates Tracking 250641 as yet unmatched pairs. 86399 records in RAM.
INFO 2026-06-08 09:04:49 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr19:11,903,939
INFO 2026-06-08 09:04:49 MarkDuplicates Tracking 247792 as yet unmatched pairs. 83549 records in RAM.
INFO 2026-06-08 09:04:50 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr19:12,949,080
INFO 2026-06-08 09:04:50 MarkDuplicates Tracking 245187 as yet unmatched pairs. 80944 records in RAM.
INFO 2026-06-08 09:04:52 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr19:14,397,745
INFO 2026-06-08 09:04:52 MarkDuplicates Tracking 242066 as yet unmatched pairs. 77823 records in RAM.
INFO 2026-06-08 09:04:53 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr19:15,192,222
INFO 2026-06-08 09:04:53 MarkDuplicates Tracking 239308 as yet unmatched pairs. 75061 records in RAM.
INFO 2026-06-08 09:04:55 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr19:15,400,342
INFO 2026-06-08 09:04:55 MarkDuplicates Tracking 236462 as yet unmatched pairs. 72215 records in RAM.
INFO 2026-06-08 09:04:57 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr19:17,219,683
INFO 2026-06-08 09:04:57 MarkDuplicates Tracking 233394 as yet unmatched pairs. 69142 records in RAM.
INFO 2026-06-08 09:04:58 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr19:18,155,990
INFO 2026-06-08 09:04:58 MarkDuplicates Tracking 230845 as yet unmatched pairs. 66588 records in RAM.
INFO 2026-06-08 09:05:00 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr19:19,004,226
INFO 2026-06-08 09:05:00 MarkDuplicates Tracking 227683 as yet unmatched pairs. 63422 records in RAM.
INFO 2026-06-08 09:05:01 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr19:31,278,713
INFO 2026-06-08 09:05:01 MarkDuplicates Tracking 224912 as yet unmatched pairs. 60650 records in RAM.
INFO 2026-06-08 09:05:03 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr19:35,119,361
INFO 2026-06-08 09:05:03 MarkDuplicates Tracking 223050 as yet unmatched pairs. 58787 records in RAM.
INFO 2026-06-08 09:05:06 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 2s. Last read position: chr19:36,103,492
INFO 2026-06-08 09:05:06 MarkDuplicates Tracking 219017 as yet unmatched pairs. 54750 records in RAM.
INFO 2026-06-08 09:05:08 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr19:38,714,502
INFO 2026-06-08 09:05:08 MarkDuplicates Tracking 217806 as yet unmatched pairs. 53538 records in RAM.
INFO 2026-06-08 09:05:09 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr19:39,407,749
INFO 2026-06-08 09:05:09 MarkDuplicates Tracking 214811 as yet unmatched pairs. 50542 records in RAM.
INFO 2026-06-08 09:05:11 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr19:39,885,833
INFO 2026-06-08 09:05:11 MarkDuplicates Tracking 212093 as yet unmatched pairs. 47822 records in RAM.
INFO 2026-06-08 09:05:13 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 2s. Last read position: chr19:40,236,376
INFO 2026-06-08 09:05:13 MarkDuplicates Tracking 209241 as yet unmatched pairs. 44970 records in RAM.
INFO 2026-06-08 09:05:14 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr19:41,304,146
INFO 2026-06-08 09:05:14 MarkDuplicates Tracking 205806 as yet unmatched pairs. 41534 records in RAM.
INFO 2026-06-08 09:05:16 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr19:41,715,050
INFO 2026-06-08 09:05:16 MarkDuplicates Tracking 209418 as yet unmatched pairs. 45145 records in RAM.
INFO 2026-06-08 09:05:18 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr19:41,718,310
INFO 2026-06-08 09:05:18 MarkDuplicates Tracking 205905 as yet unmatched pairs. 41632 records in RAM.
INFO 2026-06-08 09:05:20 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr19:41,869,065
INFO 2026-06-08 09:05:20 MarkDuplicates Tracking 200345 as yet unmatched pairs. 36072 records in RAM.
INFO 2026-06-08 09:05:21 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr19:42,293,113
INFO 2026-06-08 09:05:21 MarkDuplicates Tracking 196221 as yet unmatched pairs. 31948 records in RAM.
INFO 2026-06-08 09:05:23 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr19:44,820,975
INFO 2026-06-08 09:05:23 MarkDuplicates Tracking 193385 as yet unmatched pairs. 29105 records in RAM.
INFO 2026-06-08 09:05:24 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr19:45,821,403
INFO 2026-06-08 09:05:24 MarkDuplicates Tracking 190725 as yet unmatched pairs. 26443 records in RAM.
INFO 2026-06-08 09:05:26 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr19:47,488,283
INFO 2026-06-08 09:05:26 MarkDuplicates Tracking 187408 as yet unmatched pairs. 23125 records in RAM.
INFO 2026-06-08 09:05:28 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr19:48,873,802
INFO 2026-06-08 09:05:28 MarkDuplicates Tracking 184681 as yet unmatched pairs. 20395 records in RAM.
INFO 2026-06-08 09:05:29 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr19:49,497,584
INFO 2026-06-08 09:05:29 MarkDuplicates Tracking 182506 as yet unmatched pairs. 18219 records in RAM.
INFO 2026-06-08 09:05:31 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 2s. Last read position: chr19:49,871,831
INFO 2026-06-08 09:05:31 MarkDuplicates Tracking 178560 as yet unmatched pairs. 14273 records in RAM.
INFO 2026-06-08 09:05:33 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr19:51,573,284
INFO 2026-06-08 09:05:33 MarkDuplicates Tracking 175274 as yet unmatched pairs. 10986 records in RAM.
INFO 2026-06-08 09:05:34 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr19:54,206,380
INFO 2026-06-08 09:05:34 MarkDuplicates Tracking 173928 as yet unmatched pairs. 9639 records in RAM.
INFO 2026-06-08 09:05:36 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr19:55,364,818
INFO 2026-06-08 09:05:36 MarkDuplicates Tracking 169975 as yet unmatched pairs. 5685 records in RAM.
INFO 2026-06-08 09:05:38 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr19:57,641,010
INFO 2026-06-08 09:05:38 MarkDuplicates Tracking 166839 as yet unmatched pairs. 2549 records in RAM.
INFO 2026-06-08 09:05:40 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr20:396,425
INFO 2026-06-08 09:05:40 MarkDuplicates Tracking 164421 as yet unmatched pairs. 56791 records in RAM.
INFO 2026-06-08 09:05:41 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr20:3,072,157
INFO 2026-06-08 09:05:41 MarkDuplicates Tracking 161297 as yet unmatched pairs. 53662 records in RAM.
INFO 2026-06-08 09:05:43 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr20:5,955,221
INFO 2026-06-08 09:05:43 MarkDuplicates Tracking 158374 as yet unmatched pairs. 50739 records in RAM.
INFO 2026-06-08 09:05:45 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr20:17,621,917
INFO 2026-06-08 09:05:45 MarkDuplicates Tracking 156586 as yet unmatched pairs. 48951 records in RAM.
INFO 2026-06-08 09:05:46 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr20:20,412,037
INFO 2026-06-08 09:05:46 MarkDuplicates Tracking 153387 as yet unmatched pairs. 45751 records in RAM.
INFO 2026-06-08 09:05:48 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr20:25,259,293
INFO 2026-06-08 09:05:48 MarkDuplicates Tracking 151920 as yet unmatched pairs. 44282 records in RAM.
INFO 2026-06-08 09:05:49 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr20:32,133,052
INFO 2026-06-08 09:05:49 MarkDuplicates Tracking 148423 as yet unmatched pairs. 40785 records in RAM.
INFO 2026-06-08 09:05:51 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr20:34,078,504
INFO 2026-06-08 09:05:51 MarkDuplicates Tracking 146466 as yet unmatched pairs. 38828 records in RAM.
INFO 2026-06-08 09:05:53 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr20:35,005,644
INFO 2026-06-08 09:05:53 MarkDuplicates Tracking 143012 as yet unmatched pairs. 35374 records in RAM.
INFO 2026-06-08 09:05:55 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 2s. Last read position: chr20:35,714,271
INFO 2026-06-08 09:05:55 MarkDuplicates Tracking 141810 as yet unmatched pairs. 34172 records in RAM.
INFO 2026-06-08 09:05:57 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr20:37,223,950
INFO 2026-06-08 09:05:57 MarkDuplicates Tracking 137925 as yet unmatched pairs. 30287 records in RAM.
INFO 2026-06-08 09:05:58 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr20:41,166,490
INFO 2026-06-08 09:05:58 MarkDuplicates Tracking 134910 as yet unmatched pairs. 27271 records in RAM.
INFO 2026-06-08 09:06:01 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 2s. Last read position: chr20:44,513,885
INFO 2026-06-08 09:06:01 MarkDuplicates Tracking 132493 as yet unmatched pairs. 24854 records in RAM.
INFO 2026-06-08 09:06:02 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr20:45,891,649
INFO 2026-06-08 09:06:02 MarkDuplicates Tracking 129788 as yet unmatched pairs. 22146 records in RAM.
INFO 2026-06-08 09:06:04 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr20:47,702,650
INFO 2026-06-08 09:06:04 MarkDuplicates Tracking 126619 as yet unmatched pairs. 18977 records in RAM.
INFO 2026-06-08 09:06:05 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr20:49,987,949
INFO 2026-06-08 09:06:05 MarkDuplicates Tracking 124132 as yet unmatched pairs. 16488 records in RAM.
INFO 2026-06-08 09:06:07 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr20:54,215,429
INFO 2026-06-08 09:06:07 MarkDuplicates Tracking 121475 as yet unmatched pairs. 13831 records in RAM.
INFO 2026-06-08 09:06:08 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr20:58,909,207
INFO 2026-06-08 09:06:08 MarkDuplicates Tracking 120449 as yet unmatched pairs. 12805 records in RAM.
INFO 2026-06-08 09:06:10 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr20:62,308,690
INFO 2026-06-08 09:06:10 MarkDuplicates Tracking 115557 as yet unmatched pairs. 7913 records in RAM.
INFO 2026-06-08 09:06:12 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr20:63,203,210
INFO 2026-06-08 09:06:12 MarkDuplicates Tracking 113224 as yet unmatched pairs. 5579 records in RAM.
INFO 2026-06-08 09:06:14 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr20:63,708,946
INFO 2026-06-08 09:06:14 MarkDuplicates Tracking 109274 as yet unmatched pairs. 1628 records in RAM.
INFO 2026-06-08 09:06:15 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr21:8,214,773
INFO 2026-06-08 09:06:15 MarkDuplicates Tracking 107033 as yet unmatched pairs. 20717 records in RAM.
INFO 2026-06-08 09:06:16 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,124
INFO 2026-06-08 09:06:16 MarkDuplicates Tracking 106254 as yet unmatched pairs. 19936 records in RAM.
INFO 2026-06-08 09:06:17 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr21:14,038,352
INFO 2026-06-08 09:06:17 MarkDuplicates Tracking 104527 as yet unmatched pairs. 18208 records in RAM.
INFO 2026-06-08 09:06:19 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr21:32,338,882
INFO 2026-06-08 09:06:19 MarkDuplicates Tracking 101980 as yet unmatched pairs. 15661 records in RAM.
INFO 2026-06-08 09:06:20 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr21:36,200,347
INFO 2026-06-08 09:06:20 MarkDuplicates Tracking 99230 as yet unmatched pairs. 12911 records in RAM.
INFO 2026-06-08 09:06:22 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr21:41,432,146
INFO 2026-06-08 09:06:22 MarkDuplicates Tracking 97117 as yet unmatched pairs. 10798 records in RAM.
INFO 2026-06-08 09:06:24 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr21:43,690,362
INFO 2026-06-08 09:06:24 MarkDuplicates Tracking 94066 as yet unmatched pairs. 7745 records in RAM.
INFO 2026-06-08 09:06:25 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr21:45,494,864
INFO 2026-06-08 09:06:25 MarkDuplicates Tracking 91300 as yet unmatched pairs. 4979 records in RAM.
INFO 2026-06-08 09:06:28 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 2s. Last read position: chr21:46,122,909
INFO 2026-06-08 09:06:28 MarkDuplicates Tracking 88774 as yet unmatched pairs. 2453 records in RAM.
INFO 2026-06-08 09:06:30 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 2s. Last read position: chr22:19,041,192
INFO 2026-06-08 09:06:30 MarkDuplicates Tracking 85360 as yet unmatched pairs. 35839 records in RAM.
INFO 2026-06-08 09:06:31 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr22:20,858,573
INFO 2026-06-08 09:06:31 MarkDuplicates Tracking 82248 as yet unmatched pairs. 32727 records in RAM.
INFO 2026-06-08 09:06:33 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr22:23,692,681
INFO 2026-06-08 09:06:33 MarkDuplicates Tracking 79946 as yet unmatched pairs. 30425 records in RAM.
INFO 2026-06-08 09:06:35 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr22:27,982,390
INFO 2026-06-08 09:06:35 MarkDuplicates Tracking 76627 as yet unmatched pairs. 27105 records in RAM.
INFO 2026-06-08 09:06:36 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr22:29,299,312
INFO 2026-06-08 09:06:36 MarkDuplicates Tracking 75740 as yet unmatched pairs. 26218 records in RAM.
INFO 2026-06-08 09:06:38 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr22:31,262,635
INFO 2026-06-08 09:06:38 MarkDuplicates Tracking 71593 as yet unmatched pairs. 22071 records in RAM.
INFO 2026-06-08 09:06:40 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr22:36,286,766
INFO 2026-06-08 09:06:40 MarkDuplicates Tracking 69590 as yet unmatched pairs. 20067 records in RAM.
INFO 2026-06-08 09:06:41 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr22:37,231,238
INFO 2026-06-08 09:06:41 MarkDuplicates Tracking 65682 as yet unmatched pairs. 16158 records in RAM.
INFO 2026-06-08 09:06:43 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr22:38,495,004
INFO 2026-06-08 09:06:43 MarkDuplicates Tracking 63413 as yet unmatched pairs. 13889 records in RAM.
INFO 2026-06-08 09:06:44 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr22:40,840,667
INFO 2026-06-08 09:06:44 MarkDuplicates Tracking 60329 as yet unmatched pairs. 10805 records in RAM.
INFO 2026-06-08 09:06:46 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chr22:42,210,337
INFO 2026-06-08 09:06:46 MarkDuplicates Tracking 57502 as yet unmatched pairs. 7977 records in RAM.
INFO 2026-06-08 09:06:48 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr22:46,663,074
INFO 2026-06-08 09:06:48 MarkDuplicates Tracking 54735 as yet unmatched pairs. 5209 records in RAM.
INFO 2026-06-08 09:06:49 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chr22:50,467,436
INFO 2026-06-08 09:06:49 MarkDuplicates Tracking 51641 as yet unmatched pairs. 2115 records in RAM.
INFO 2026-06-08 09:06:51 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 2s. Last read position: chrX:2,723,223
INFO 2026-06-08 09:06:51 MarkDuplicates Tracking 48461 as yet unmatched pairs. 38776 records in RAM.
INFO 2026-06-08 09:06:53 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chrX:16,834,295
INFO 2026-06-08 09:06:53 MarkDuplicates Tracking 45590 as yet unmatched pairs. 35904 records in RAM.
INFO 2026-06-08 09:06:54 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chrX:30,668,011
INFO 2026-06-08 09:06:54 MarkDuplicates Tracking 43465 as yet unmatched pairs. 33769 records in RAM.
INFO 2026-06-08 09:06:56 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chrX:41,534,735
INFO 2026-06-08 09:06:56 MarkDuplicates Tracking 41191 as yet unmatched pairs. 31494 records in RAM.
INFO 2026-06-08 09:06:58 MarkDuplicates Read 641,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 2s. Last read position: chrX:48,461,012
INFO 2026-06-08 09:06:58 MarkDuplicates Tracking 38401 as yet unmatched pairs. 28704 records in RAM.
INFO 2026-06-08 09:06:59 MarkDuplicates Read 642,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chrX:50,634,872
INFO 2026-06-08 09:06:59 MarkDuplicates Tracking 35588 as yet unmatched pairs. 25891 records in RAM.
INFO 2026-06-08 09:07:01 MarkDuplicates Read 643,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chrX:53,614,653
INFO 2026-06-08 09:07:01 MarkDuplicates Tracking 33183 as yet unmatched pairs. 23486 records in RAM.
INFO 2026-06-08 09:07:03 MarkDuplicates Read 644,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 2s. Last read position: chrX:70,493,332
INFO 2026-06-08 09:07:03 MarkDuplicates Tracking 30369 as yet unmatched pairs. 20672 records in RAM.
INFO 2026-06-08 09:07:05 MarkDuplicates Read 645,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chrX:72,273,884
INFO 2026-06-08 09:07:05 MarkDuplicates Tracking 28741 as yet unmatched pairs. 19044 records in RAM.
INFO 2026-06-08 09:07:07 MarkDuplicates Read 646,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chrX:85,303,405
INFO 2026-06-08 09:07:07 MarkDuplicates Tracking 25695 as yet unmatched pairs. 15998 records in RAM.
INFO 2026-06-08 09:07:09 MarkDuplicates Read 647,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chrX:110,184,799
INFO 2026-06-08 09:07:09 MarkDuplicates Tracking 23107 as yet unmatched pairs. 13409 records in RAM.
INFO 2026-06-08 09:07:10 MarkDuplicates Read 648,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chrX:129,465,636
INFO 2026-06-08 09:07:10 MarkDuplicates Tracking 20826 as yet unmatched pairs. 11128 records in RAM.
INFO 2026-06-08 09:07:12 MarkDuplicates Read 649,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chrX:146,620,565
INFO 2026-06-08 09:07:12 MarkDuplicates Tracking 18537 as yet unmatched pairs. 8839 records in RAM.
INFO 2026-06-08 09:07:13 MarkDuplicates Read 650,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chrX:153,954,762
INFO 2026-06-08 09:07:13 MarkDuplicates Tracking 15837 as yet unmatched pairs. 6137 records in RAM.
INFO 2026-06-08 09:07:15 MarkDuplicates Read 651,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chrX:154,364,844
INFO 2026-06-08 09:07:15 MarkDuplicates Tracking 13529 as yet unmatched pairs. 3829 records in RAM.
INFO 2026-06-08 09:07:16 MarkDuplicates Read 652,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chrX:155,382,281
INFO 2026-06-08 09:07:16 MarkDuplicates Tracking 9815 as yet unmatched pairs. 115 records in RAM.
INFO 2026-06-08 09:07:18 MarkDuplicates Read 653,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,133
INFO 2026-06-08 09:07:18 MarkDuplicates Tracking 8144 as yet unmatched pairs. 2608 records in RAM.
INFO 2026-06-08 09:07:19 MarkDuplicates Read 654,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: GL000220.1:159,466
INFO 2026-06-08 09:07:19 MarkDuplicates Tracking 5675 as yet unmatched pairs. 139 records in RAM.
INFO 2026-06-08 09:07:20 MarkDuplicates Read 655,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: KI270733.1:137,898
INFO 2026-06-08 09:07:20 MarkDuplicates Tracking 295 as yet unmatched pairs. 275 records in RAM.
INFO 2026-06-08 09:07:21 MarkDuplicates Read 655645633 records. 0 pairs never matched.
INFO 2026-06-08 09:08:10 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141176; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:08:10 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:08:15 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:08:16 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:08:35 OpticalDuplicateFinder Large duplicate set. size = 1495
INFO 2026-06-08 09:08:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,367
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder Large duplicate set. size = 1980
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,507
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder Large duplicate set. size = 1117
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,965
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder Large duplicate set. size = 1275
INFO 2026-06-08 09:08:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,459
INFO 2026-06-08 09:08:43 OpticalDuplicateFinder Large duplicate set. size = 1177
INFO 2026-06-08 09:08:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,339
INFO 2026-06-08 09:08:43 OpticalDuplicateFinder Large duplicate set. size = 1209
INFO 2026-06-08 09:08:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,735
INFO 2026-06-08 09:08:43 OpticalDuplicateFinder Large duplicate set. size = 1286
INFO 2026-06-08 09:08:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,726
INFO 2026-06-08 09:08:43 OpticalDuplicateFinder Large duplicate set. size = 1172
INFO 2026-06-08 09:08:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,022
INFO 2026-06-08 09:08:44 OpticalDuplicateFinder Large duplicate set. size = 1015
INFO 2026-06-08 09:08:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,766
INFO 2026-06-08 09:08:44 OpticalDuplicateFinder Large duplicate set. size = 1190
INFO 2026-06-08 09:08:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,648
INFO 2026-06-08 09:08:44 OpticalDuplicateFinder Large duplicate set. size = 1206
INFO 2026-06-08 09:08:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,606
INFO 2026-06-08 09:08:44 OpticalDuplicateFinder Large duplicate set. size = 1950
INFO 2026-06-08 09:08:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,508
INFO 2026-06-08 09:08:44 OpticalDuplicateFinder Large duplicate set. size = 2002
INFO 2026-06-08 09:08:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,212
INFO 2026-06-08 09:08:44 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,745
INFO 2026-06-08 09:08:44 OpticalDuplicateFinder Large duplicate set. size = 1553
INFO 2026-06-08 09:08:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,918
INFO 2026-06-08 09:08:44 OpticalDuplicateFinder Large duplicate set. size = 1007
INFO 2026-06-08 09:08:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,028
INFO 2026-06-08 09:08:44 OpticalDuplicateFinder Large duplicate set. size = 1718
INFO 2026-06-08 09:08:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,566
INFO 2026-06-08 09:08:45 OpticalDuplicateFinder Large duplicate set. size = 1368
INFO 2026-06-08 09:08:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,067
INFO 2026-06-08 09:08:45 OpticalDuplicateFinder Large duplicate set. size = 1504
INFO 2026-06-08 09:08:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,471
INFO 2026-06-08 09:08:45 OpticalDuplicateFinder Large duplicate set. size = 2551
INFO 2026-06-08 09:08:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,608
INFO 2026-06-08 09:08:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,536
INFO 2026-06-08 09:08:45 OpticalDuplicateFinder Large duplicate set. size = 1087
INFO 2026-06-08 09:08:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,196
INFO 2026-06-08 09:08:45 OpticalDuplicateFinder Large duplicate set. size = 2320
INFO 2026-06-08 09:08:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,426
INFO 2026-06-08 09:08:46 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,963
INFO 2026-06-08 09:08:46 OpticalDuplicateFinder Large duplicate set. size = 1049
INFO 2026-06-08 09:08:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,243
INFO 2026-06-08 09:08:46 OpticalDuplicateFinder Large duplicate set. size = 1037
INFO 2026-06-08 09:08:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,817
INFO 2026-06-08 09:08:46 OpticalDuplicateFinder Large duplicate set. size = 1293
INFO 2026-06-08 09:08:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,825
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1025
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,119
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1152
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,516
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder Large duplicate set. size = 1141
INFO 2026-06-08 09:09:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,515
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder Large duplicate set. size = 1384
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,869
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder Large duplicate set. size = 1030
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,884
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder Large duplicate set. size = 1072
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,791
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder Large duplicate set. size = 1239
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,702
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder Large duplicate set. size = 1056
INFO 2026-06-08 09:09:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,420
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1172
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,541
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1300
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,800
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1358
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,290
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1026
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,837
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1185
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,505
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1019
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,200
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1105
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,113
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1329
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,412
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1856
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,403
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 2055
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,180
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,847
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1514
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,903
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1836
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,741
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1268
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,998
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1300
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,279
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1246
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,924
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1832
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,596
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1333
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,519
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder Large duplicate set. size = 1212
INFO 2026-06-08 09:09:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,810
INFO 2026-06-08 09:09:52 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:09:52 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:10:55 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:11:00 MarkDuplicates After generateDuplicateIndexes freeMemory: 203930464; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:11:00 MarkDuplicates Marking 346451969 records as duplicates.
INFO 2026-06-08 09:11:00 MarkDuplicates Found 17218301 optical duplicate clusters.
INFO 2026-06-08 09:11:00 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:11:18 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:18s. Time for last 10,000,000: 18s. Last read position: chr1:22,638,915
INFO 2026-06-08 09:11:36 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:36s. Time for last 10,000,000: 17s. Last read position: chr1:44,636,118
INFO 2026-06-08 09:11:55 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:54s. Time for last 10,000,000: 18s. Last read position: chr1:116,401,233
INFO 2026-06-08 09:12:13 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:13s. Time for last 10,000,000: 18s. Last read position: chr1:155,248,117
INFO 2026-06-08 09:12:31 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:31s. Time for last 10,000,000: 17s. Last read position: chr1:202,746,195
INFO 2026-06-08 09:12:49 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:49s. Time for last 10,000,000: 18s. Last read position: chr2:20,034,966
INFO 2026-06-08 09:13:08 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:07s. Time for last 10,000,000: 18s. Last read position: chr2:43,225,238
INFO 2026-06-08 09:13:26 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:25s. Time for last 10,000,000: 17s. Last read position: chr2:100,975,451
INFO 2026-06-08 09:13:44 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:43s. Time for last 10,000,000: 18s. Last read position: chr2:182,989,093
INFO 2026-06-08 09:14:02 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:03:01s. Time for last 10,000,000: 18s. Last read position: chr2:219,282,878
INFO 2026-06-08 09:14:20 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:20s. Time for last 10,000,000: 18s. Last read position: chr3:40,458,715
INFO 2026-06-08 09:14:38 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:38s. Time for last 10,000,000: 18s. Last read position: chr3:66,417,142
INFO 2026-06-08 09:14:56 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:56s. Time for last 10,000,000: 18s. Last read position: chr3:179,201,301
INFO 2026-06-08 09:15:15 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:14s. Time for last 10,000,000: 18s. Last read position: chr4:39,849,533
INFO 2026-06-08 09:15:33 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:32s. Time for last 10,000,000: 18s. Last read position: chr4:183,447,201
INFO 2026-06-08 09:15:51 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:50s. Time for last 10,000,000: 18s. Last read position: chr5:83,520,804
INFO 2026-06-08 09:16:09 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:05:08s. Time for last 10,000,000: 17s. Last read position: chr5:151,663,529
INFO 2026-06-08 09:16:27 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:26s. Time for last 10,000,000: 17s. Last read position: chr6:26,055,963
INFO 2026-06-08 09:16:44 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:44s. Time for last 10,000,000: 17s. Last read position: chr6:33,686,474
INFO 2026-06-08 09:17:02 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:06:02s. Time for last 10,000,000: 18s. Last read position: chr6:117,694,038
INFO 2026-06-08 09:17:20 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:20s. Time for last 10,000,000: 18s. Last read position: chr7:5,528,569
INFO 2026-06-08 09:17:38 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:38s. Time for last 10,000,000: 17s. Last read position: chr7:75,018,022
INFO 2026-06-08 09:17:56 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:56s. Time for last 10,000,000: 17s. Last read position: chr7:100,993,139
INFO 2026-06-08 09:18:14 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:13s. Time for last 10,000,000: 17s. Last read position: chr7:100,996,974
INFO 2026-06-08 09:18:31 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:31s. Time for last 10,000,000: 17s. Last read position: chr7:101,000,081
INFO 2026-06-08 09:18:48 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:48s. Time for last 10,000,000: 17s. Last read position: chr7:101,004,134
INFO 2026-06-08 09:19:06 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:08:06s. Time for last 10,000,000: 18s. Last read position: chr7:143,294,596
INFO 2026-06-08 09:19:25 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:24s. Time for last 10,000,000: 18s. Last read position: chr8:47,819,459
INFO 2026-06-08 09:19:43 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:43s. Time for last 10,000,000: 18s. Last read position: chr8:127,738,744
INFO 2026-06-08 09:20:01 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:09:01s. Time for last 10,000,000: 17s. Last read position: chr8:144,398,618
INFO 2026-06-08 09:20:20 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:19s. Time for last 10,000,000: 18s. Last read position: chr9:98,844,113
INFO 2026-06-08 09:20:38 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:38s. Time for last 10,000,000: 18s. Last read position: chr9:134,048,142
INFO 2026-06-08 09:20:56 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:56s. Time for last 10,000,000: 18s. Last read position: chr10:46,131,033
INFO 2026-06-08 09:21:15 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:10:14s. Time for last 10,000,000: 18s. Last read position: chr10:119,059,704
INFO 2026-06-08 09:21:33 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:32s. Time for last 10,000,000: 17s. Last read position: chr11:1,248,036
INFO 2026-06-08 09:21:51 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:51s. Time for last 10,000,000: 18s. Last read position: chr11:57,814,345
INFO 2026-06-08 09:22:09 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:11:09s. Time for last 10,000,000: 18s. Last read position: chr11:68,049,099
INFO 2026-06-08 09:22:28 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:27s. Time for last 10,000,000: 18s. Last read position: chr11:123,058,293
INFO 2026-06-08 09:22:46 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:46s. Time for last 10,000,000: 18s. Last read position: chr12:47,965,934
INFO 2026-06-08 09:23:04 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:12:04s. Time for last 10,000,000: 18s. Last read position: chr12:57,258,012
INFO 2026-06-08 09:23:23 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:12:22s. Time for last 10,000,000: 18s. Last read position: chr12:120,978,734
INFO 2026-06-08 09:23:41 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:41s. Time for last 10,000,000: 18s. Last read position: chr13:49,201,835
INFO 2026-06-08 09:23:59 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:59s. Time for last 10,000,000: 18s. Last read position: chr14:24,270,005
INFO 2026-06-08 09:24:18 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:13:17s. Time for last 10,000,000: 18s. Last read position: chr14:102,084,781
INFO 2026-06-08 09:24:35 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:35s. Time for last 10,000,000: 17s. Last read position: chr15:40,873,107
INFO 2026-06-08 09:24:54 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:53s. Time for last 10,000,000: 18s. Last read position: chr15:78,771,760
INFO 2026-06-08 09:25:12 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:14:11s. Time for last 10,000,000: 18s. Last read position: chr16:4,876,884
INFO 2026-06-08 09:25:30 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:14:29s. Time for last 10,000,000: 18s. Last read position: chr16:24,777,244
INFO 2026-06-08 09:25:48 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:48s. Time for last 10,000,000: 18s. Last read position: chr16:57,127,847
INFO 2026-06-08 09:26:06 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:15:06s. Time for last 10,000,000: 18s. Last read position: chr17:1,361,272
INFO 2026-06-08 09:26:24 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:15:24s. Time for last 10,000,000: 18s. Last read position: chr17:29,166,318
INFO 2026-06-08 09:26:42 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:15:42s. Time for last 10,000,000: 18s. Last read position: chr17:44,398,021
INFO 2026-06-08 09:27:00 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:16:00s. Time for last 10,000,000: 17s. Last read position: chr17:50,195,624
INFO 2026-06-08 09:27:19 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:16:18s. Time for last 10,000,000: 18s. Last read position: chr17:75,320,377
INFO 2026-06-08 09:27:37 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:16:36s. Time for last 10,000,000: 18s. Last read position: chr18:31,546,202
INFO 2026-06-08 09:27:55 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:54s. Time for last 10,000,000: 18s. Last read position: chr19:7,083,045