Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/0852524314dbcc5248a8cde5b5d695/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/0852524314dbcc5248a8cde5b5d695/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/f05e907b3f3300c9f4a220cba61125/aih-tih-sc-c63171-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx121241M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-c63171-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-c63171-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-c63171-R1_B23WHYVLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
09:30:08.142 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 09:30:08 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-c63171-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-c63171-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-c63171-R1_B23WHYVLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 09:30:08 GMT 2026] Executing as ?@nf-550852524314dbcc5248a8cde5b5d695-e7bbd-djtjg on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 09:30:08 MarkDuplicates Start of doWork freeMemory: 105132856; totalMemory: 134217728; maxMemory: 127137742848
INFO 2026-06-08 09:30:08 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 09:30:08 MarkDuplicates Will retain up to 460643995 data points before spilling to disk.
INFO 2026-06-08 09:30:13 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,339,318
INFO 2026-06-08 09:30:13 MarkDuplicates Tracking 3307 as yet unmatched pairs. 421 records in RAM.
INFO 2026-06-08 09:30:16 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:2,303,996
INFO 2026-06-08 09:30:16 MarkDuplicates Tracking 6067 as yet unmatched pairs. 194 records in RAM.
INFO 2026-06-08 09:30:18 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:7,808,962
INFO 2026-06-08 09:30:18 MarkDuplicates Tracking 9011 as yet unmatched pairs. 11 records in RAM.
INFO 2026-06-08 09:30:20 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:10,296,591
INFO 2026-06-08 09:30:20 MarkDuplicates Tracking 11900 as yet unmatched pairs. 97 records in RAM.
INFO 2026-06-08 09:30:23 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:12,029,780
INFO 2026-06-08 09:30:23 MarkDuplicates Tracking 14666 as yet unmatched pairs. 104 records in RAM.
INFO 2026-06-08 09:30:25 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 2s. Last read position: chr1:15,934,475
INFO 2026-06-08 09:30:25 MarkDuplicates Tracking 17349 as yet unmatched pairs. 129 records in RAM.
INFO 2026-06-08 09:30:28 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:17,656,680
INFO 2026-06-08 09:30:28 MarkDuplicates Tracking 20126 as yet unmatched pairs. 346 records in RAM.
INFO 2026-06-08 09:30:30 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 2s. Last read position: chr1:19,978,397
INFO 2026-06-08 09:30:30 MarkDuplicates Tracking 24021 as yet unmatched pairs. 1668 records in RAM.
INFO 2026-06-08 09:30:33 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:21,839,438
INFO 2026-06-08 09:30:33 MarkDuplicates Tracking 25430 as yet unmatched pairs. 428 records in RAM.
INFO 2026-06-08 09:30:35 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:22,638,915
INFO 2026-06-08 09:30:35 MarkDuplicates Tracking 28612 as yet unmatched pairs. 605 records in RAM.
INFO 2026-06-08 09:30:38 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 3s. Last read position: chr1:23,751,770
INFO 2026-06-08 09:30:38 MarkDuplicates Tracking 30767 as yet unmatched pairs. 83 records in RAM.
INFO 2026-06-08 09:30:40 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 2s. Last read position: chr1:26,318,053
INFO 2026-06-08 09:30:40 MarkDuplicates Tracking 33369 as yet unmatched pairs. 149 records in RAM.
INFO 2026-06-08 09:30:42 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 2s. Last read position: chr1:27,550,831
INFO 2026-06-08 09:30:42 MarkDuplicates Tracking 35922 as yet unmatched pairs. 115 records in RAM.
INFO 2026-06-08 09:30:45 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:31,413,260
INFO 2026-06-08 09:30:45 MarkDuplicates Tracking 38729 as yet unmatched pairs. 323 records in RAM.
INFO 2026-06-08 09:30:47 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:32,770,284
INFO 2026-06-08 09:30:47 MarkDuplicates Tracking 41690 as yet unmatched pairs. 490 records in RAM.
INFO 2026-06-08 09:30:49 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:35,506,898
INFO 2026-06-08 09:30:49 MarkDuplicates Tracking 44188 as yet unmatched pairs. 190 records in RAM.
INFO 2026-06-08 09:30:51 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 2s. Last read position: chr1:39,028,907
INFO 2026-06-08 09:30:51 MarkDuplicates Tracking 46790 as yet unmatched pairs. 121 records in RAM.
INFO 2026-06-08 09:30:54 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 2s. Last read position: chr1:40,066,298
INFO 2026-06-08 09:30:54 MarkDuplicates Tracking 49333 as yet unmatched pairs. 201 records in RAM.
INFO 2026-06-08 09:30:56 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:42,943,296
INFO 2026-06-08 09:30:56 MarkDuplicates Tracking 52492 as yet unmatched pairs. 609 records in RAM.
INFO 2026-06-08 09:30:58 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 2s. Last read position: chr1:44,636,118
INFO 2026-06-08 09:30:58 MarkDuplicates Tracking 54975 as yet unmatched pairs. 170 records in RAM.
INFO 2026-06-08 09:31:00 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 2s. Last read position: chr1:46,256,300
INFO 2026-06-08 09:31:00 MarkDuplicates Tracking 57668 as yet unmatched pairs. 115 records in RAM.
INFO 2026-06-08 09:31:03 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 2s. Last read position: chr1:52,525,878
INFO 2026-06-08 09:31:03 MarkDuplicates Tracking 60273 as yet unmatched pairs. 112 records in RAM.
INFO 2026-06-08 09:31:05 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 2s. Last read position: chr1:59,339,956
INFO 2026-06-08 09:31:05 MarkDuplicates Tracking 62778 as yet unmatched pairs. 71 records in RAM.
INFO 2026-06-08 09:31:08 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 2s. Last read position: chr1:68,481,547
INFO 2026-06-08 09:31:08 MarkDuplicates Tracking 65309 as yet unmatched pairs. 133 records in RAM.
INFO 2026-06-08 09:31:10 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 2s. Last read position: chr1:86,579,485
INFO 2026-06-08 09:31:10 MarkDuplicates Tracking 67941 as yet unmatched pairs. 343 records in RAM.
INFO 2026-06-08 09:31:12 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:93,873,124
INFO 2026-06-08 09:31:12 MarkDuplicates Tracking 70137 as yet unmatched pairs. 129 records in RAM.
INFO 2026-06-08 09:31:14 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 2s. Last read position: chr1:108,943,959
INFO 2026-06-08 09:31:14 MarkDuplicates Tracking 72698 as yet unmatched pairs. 233 records in RAM.
INFO 2026-06-08 09:31:16 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 2s. Last read position: chr1:111,131,439
INFO 2026-06-08 09:31:16 MarkDuplicates Tracking 75144 as yet unmatched pairs. 136 records in RAM.
INFO 2026-06-08 09:31:19 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 2s. Last read position: chr1:113,973,154
INFO 2026-06-08 09:31:19 MarkDuplicates Tracking 77744 as yet unmatched pairs. 227 records in RAM.
INFO 2026-06-08 09:31:21 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 2s. Last read position: chr1:116,401,233
INFO 2026-06-08 09:31:21 MarkDuplicates Tracking 81998 as yet unmatched pairs. 2008 records in RAM.
INFO 2026-06-08 09:31:23 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:119,967,480
INFO 2026-06-08 09:31:23 MarkDuplicates Tracking 83184 as yet unmatched pairs. 476 records in RAM.
INFO 2026-06-08 09:31:25 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 2s. Last read position: chr1:145,630,644
INFO 2026-06-08 09:31:25 MarkDuplicates Tracking 84014 as yet unmatched pairs. 87 records in RAM.
INFO 2026-06-08 09:31:27 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 2s. Last read position: chr1:148,109,317
INFO 2026-06-08 09:31:27 MarkDuplicates Tracking 85327 as yet unmatched pairs. 89 records in RAM.
INFO 2026-06-08 09:31:29 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:149,488,141
INFO 2026-06-08 09:31:29 MarkDuplicates Tracking 86214 as yet unmatched pairs. 118 records in RAM.
INFO 2026-06-08 09:31:31 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:149,929,654
INFO 2026-06-08 09:31:31 MarkDuplicates Tracking 87920 as yet unmatched pairs. 127 records in RAM.
INFO 2026-06-08 09:31:33 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 2s. Last read position: chr1:151,053,247
INFO 2026-06-08 09:31:33 MarkDuplicates Tracking 91000 as yet unmatched pairs. 496 records in RAM.
INFO 2026-06-08 09:31:35 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:153,534,788
INFO 2026-06-08 09:31:35 MarkDuplicates Tracking 94211 as yet unmatched pairs. 1211 records in RAM.
INFO 2026-06-08 09:31:37 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 2s. Last read position: chr1:154,170,456
INFO 2026-06-08 09:31:37 MarkDuplicates Tracking 102111 as yet unmatched pairs. 6522 records in RAM.
INFO 2026-06-08 09:31:39 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 2s. Last read position: chr1:154,601,876
INFO 2026-06-08 09:31:39 MarkDuplicates Tracking 99347 as yet unmatched pairs. 1380 records in RAM.
INFO 2026-06-08 09:31:41 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 2s. Last read position: chr1:155,248,117
INFO 2026-06-08 09:31:41 MarkDuplicates Tracking 100861 as yet unmatched pairs. 175 records in RAM.
INFO 2026-06-08 09:31:43 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:156,015,003
INFO 2026-06-08 09:31:43 MarkDuplicates Tracking 103776 as yet unmatched pairs. 797 records in RAM.
INFO 2026-06-08 09:31:45 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 2s. Last read position: chr1:156,500,581
INFO 2026-06-08 09:31:45 MarkDuplicates Tracking 106115 as yet unmatched pairs. 20 records in RAM.
INFO 2026-06-08 09:31:47 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 2s. Last read position: chr1:160,240,016
INFO 2026-06-08 09:31:47 MarkDuplicates Tracking 108862 as yet unmatched pairs. 116 records in RAM.
INFO 2026-06-08 09:31:49 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:161,544,851
INFO 2026-06-08 09:31:49 MarkDuplicates Tracking 111683 as yet unmatched pairs. 413 records in RAM.
INFO 2026-06-08 09:31:51 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 2s. Last read position: chr1:169,111,370
INFO 2026-06-08 09:31:51 MarkDuplicates Tracking 116183 as yet unmatched pairs. 2586 records in RAM.
INFO 2026-06-08 09:31:53 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 2s. Last read position: chr1:171,568,297
INFO 2026-06-08 09:31:53 MarkDuplicates Tracking 116179 as yet unmatched pairs. 194 records in RAM.
INFO 2026-06-08 09:31:56 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 2s. Last read position: chr1:180,194,232
INFO 2026-06-08 09:31:56 MarkDuplicates Tracking 119061 as yet unmatched pairs. 551 records in RAM.
INFO 2026-06-08 09:31:58 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 2s. Last read position: chr1:185,300,013
INFO 2026-06-08 09:31:58 MarkDuplicates Tracking 122577 as yet unmatched pairs. 1390 records in RAM.
INFO 2026-06-08 09:32:00 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr1:193,069,071
INFO 2026-06-08 09:32:00 MarkDuplicates Tracking 123537 as yet unmatched pairs. 80 records in RAM.
INFO 2026-06-08 09:32:03 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 2s. Last read position: chr1:202,746,195
INFO 2026-06-08 09:32:03 MarkDuplicates Tracking 126416 as yet unmatched pairs. 346 records in RAM.
INFO 2026-06-08 09:32:05 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 2s. Last read position: chr1:204,549,326
INFO 2026-06-08 09:32:05 MarkDuplicates Tracking 129436 as yet unmatched pairs. 832 records in RAM.
INFO 2026-06-08 09:32:07 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 2s. Last read position: chr1:206,939,444
INFO 2026-06-08 09:32:07 MarkDuplicates Tracking 131706 as yet unmatched pairs. 655 records in RAM.
INFO 2026-06-08 09:32:09 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 2s. Last read position: chr1:212,006,697
INFO 2026-06-08 09:32:09 MarkDuplicates Tracking 133820 as yet unmatched pairs. 134 records in RAM.
INFO 2026-06-08 09:32:11 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 2s. Last read position: chr1:223,744,130
INFO 2026-06-08 09:32:11 MarkDuplicates Tracking 136296 as yet unmatched pairs. 142 records in RAM.
INFO 2026-06-08 09:32:13 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr1:226,381,068
INFO 2026-06-08 09:32:13 MarkDuplicates Tracking 138448 as yet unmatched pairs. 44 records in RAM.
INFO 2026-06-08 09:32:15 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 2s. Last read position: chr1:231,421,201
INFO 2026-06-08 09:32:15 MarkDuplicates Tracking 141322 as yet unmatched pairs. 56 records in RAM.
INFO 2026-06-08 09:32:17 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 2s. Last read position: chr1:236,795,662
INFO 2026-06-08 09:32:17 MarkDuplicates Tracking 144279 as yet unmatched pairs. 186 records in RAM.
INFO 2026-06-08 09:32:19 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 2s. Last read position: chr1:247,300,463
INFO 2026-06-08 09:32:19 MarkDuplicates Tracking 146518 as yet unmatched pairs. 45 records in RAM.
INFO 2026-06-08 09:32:23 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 3s. Last read position: chr2:9,585,296
INFO 2026-06-08 09:32:23 MarkDuplicates Tracking 149820 as yet unmatched pairs. 149127 records in RAM.
INFO 2026-06-08 09:32:25 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 2s. Last read position: chr2:20,034,966
INFO 2026-06-08 09:32:25 MarkDuplicates Tracking 152348 as yet unmatched pairs. 151639 records in RAM.
INFO 2026-06-08 09:32:28 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 2s. Last read position: chr2:25,300,196
INFO 2026-06-08 09:32:28 MarkDuplicates Tracking 154718 as yet unmatched pairs. 153999 records in RAM.
INFO 2026-06-08 09:32:30 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 2s. Last read position: chr2:27,337,333
INFO 2026-06-08 09:32:30 MarkDuplicates Tracking 157556 as yet unmatched pairs. 156829 records in RAM.
INFO 2026-06-08 09:32:33 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 2s. Last read position: chr2:32,029,697
INFO 2026-06-08 09:32:33 MarkDuplicates Tracking 160358 as yet unmatched pairs. 159628 records in RAM.
INFO 2026-06-08 09:32:35 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,258
INFO 2026-06-08 09:32:35 MarkDuplicates Tracking 240272 as yet unmatched pairs. 156057 records in RAM.
INFO 2026-06-08 09:32:37 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:32:37 MarkDuplicates Tracking 629599 as yet unmatched pairs. 134860 records in RAM.
INFO 2026-06-08 09:32:40 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,265
INFO 2026-06-08 09:32:40 MarkDuplicates Tracking 1241198 as yet unmatched pairs. 101757 records in RAM.
INFO 2026-06-08 09:32:42 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:32:42 MarkDuplicates Tracking 1350687 as yet unmatched pairs. 95500 records in RAM.
INFO 2026-06-08 09:32:43 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,412
INFO 2026-06-08 09:32:43 MarkDuplicates Tracking 1391857 as yet unmatched pairs. 93501 records in RAM.
INFO 2026-06-08 09:32:45 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 2s. Last read position: chr2:38,318,611
INFO 2026-06-08 09:32:45 MarkDuplicates Tracking 1443463 as yet unmatched pairs. 88815 records in RAM.
INFO 2026-06-08 09:32:48 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 2s. Last read position: chr2:43,225,238
INFO 2026-06-08 09:32:48 MarkDuplicates Tracking 1441138 as yet unmatched pairs. 86477 records in RAM.
INFO 2026-06-08 09:32:50 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 2s. Last read position: chr2:47,161,723
INFO 2026-06-08 09:32:50 MarkDuplicates Tracking 1439206 as yet unmatched pairs. 84521 records in RAM.
INFO 2026-06-08 09:32:52 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr2:54,629,304
INFO 2026-06-08 09:32:52 MarkDuplicates Tracking 1436414 as yet unmatched pairs. 81721 records in RAM.
INFO 2026-06-08 09:32:54 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 2s. Last read position: chr2:55,581,581
INFO 2026-06-08 09:32:54 MarkDuplicates Tracking 1433001 as yet unmatched pairs. 78302 records in RAM.
INFO 2026-06-08 09:32:56 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 2s. Last read position: chr2:64,636,718
INFO 2026-06-08 09:32:56 MarkDuplicates Tracking 1430405 as yet unmatched pairs. 75700 records in RAM.
INFO 2026-06-08 09:32:59 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 2s. Last read position: chr2:70,216,894
INFO 2026-06-08 09:32:59 MarkDuplicates Tracking 1428198 as yet unmatched pairs. 73477 records in RAM.
INFO 2026-06-08 09:33:01 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 2s. Last read position: chr2:74,208,668
INFO 2026-06-08 09:33:01 MarkDuplicates Tracking 1425589 as yet unmatched pairs. 70867 records in RAM.
INFO 2026-06-08 09:33:03 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 2s. Last read position: chr2:85,326,909
INFO 2026-06-08 09:33:03 MarkDuplicates Tracking 1422971 as yet unmatched pairs. 68248 records in RAM.
INFO 2026-06-08 09:33:05 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 2s. Last read position: chr2:87,989,114
INFO 2026-06-08 09:33:05 MarkDuplicates Tracking 1420386 as yet unmatched pairs. 65648 records in RAM.
INFO 2026-06-08 09:33:07 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:96,290,488
INFO 2026-06-08 09:33:07 MarkDuplicates Tracking 1418263 as yet unmatched pairs. 63522 records in RAM.
INFO 2026-06-08 09:33:10 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 2s. Last read position: chr2:100,975,451
INFO 2026-06-08 09:33:10 MarkDuplicates Tracking 1416103 as yet unmatched pairs. 61340 records in RAM.
INFO 2026-06-08 09:33:12 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 2s. Last read position: chr2:108,621,353
INFO 2026-06-08 09:33:12 MarkDuplicates Tracking 1413876 as yet unmatched pairs. 59105 records in RAM.
INFO 2026-06-08 09:33:14 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 2s. Last read position: chr2:109,175,152
INFO 2026-06-08 09:33:14 MarkDuplicates Tracking 1411874 as yet unmatched pairs. 57101 records in RAM.
INFO 2026-06-08 09:33:16 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:112,055,582
INFO 2026-06-08 09:33:16 MarkDuplicates Tracking 1410683 as yet unmatched pairs. 55902 records in RAM.
INFO 2026-06-08 09:33:18 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:117,920,307
INFO 2026-06-08 09:33:18 MarkDuplicates Tracking 1408690 as yet unmatched pairs. 53905 records in RAM.
INFO 2026-06-08 09:33:20 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 2s. Last read position: chr2:128,475,212
INFO 2026-06-08 09:33:20 MarkDuplicates Tracking 1405892 as yet unmatched pairs. 51099 records in RAM.
INFO 2026-06-08 09:33:22 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 2s. Last read position: chr2:144,401,219
INFO 2026-06-08 09:33:22 MarkDuplicates Tracking 1403704 as yet unmatched pairs. 48888 records in RAM.
INFO 2026-06-08 09:33:24 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 2s. Last read position: chr2:159,478,657
INFO 2026-06-08 09:33:24 MarkDuplicates Tracking 1401119 as yet unmatched pairs. 46283 records in RAM.
INFO 2026-06-08 09:33:27 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 2s. Last read position: chr2:171,517,627
INFO 2026-06-08 09:33:27 MarkDuplicates Tracking 1398627 as yet unmatched pairs. 43771 records in RAM.
INFO 2026-06-08 09:33:29 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 2s. Last read position: chr2:177,215,812
INFO 2026-06-08 09:33:29 MarkDuplicates Tracking 1396970 as yet unmatched pairs. 42103 records in RAM.
INFO 2026-06-08 09:33:31 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 2s. Last read position: chr2:182,989,093
INFO 2026-06-08 09:33:31 MarkDuplicates Tracking 1394404 as yet unmatched pairs. 39531 records in RAM.
INFO 2026-06-08 09:33:33 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 2s. Last read position: chr2:189,008,079
INFO 2026-06-08 09:33:33 MarkDuplicates Tracking 1392510 as yet unmatched pairs. 37630 records in RAM.
INFO 2026-06-08 09:33:35 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 2s. Last read position: chr2:191,007,581
INFO 2026-06-08 09:33:35 MarkDuplicates Tracking 1389507 as yet unmatched pairs. 34620 records in RAM.
INFO 2026-06-08 09:33:37 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 2s. Last read position: chr2:199,802,218
INFO 2026-06-08 09:33:37 MarkDuplicates Tracking 1385812 as yet unmatched pairs. 30909 records in RAM.
INFO 2026-06-08 09:33:40 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 2s. Last read position: chr2:203,441,084
INFO 2026-06-08 09:33:40 MarkDuplicates Tracking 1383599 as yet unmatched pairs. 28675 records in RAM.
INFO 2026-06-08 09:33:43 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 2s. Last read position: chr2:215,361,972
INFO 2026-06-08 09:33:43 MarkDuplicates Tracking 1385592 as yet unmatched pairs. 30664 records in RAM.
INFO 2026-06-08 09:33:45 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 2s. Last read position: chr2:215,379,191
INFO 2026-06-08 09:33:45 MarkDuplicates Tracking 1381340 as yet unmatched pairs. 26402 records in RAM.
INFO 2026-06-08 09:33:47 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 2s. Last read position: chr2:215,406,360
INFO 2026-06-08 09:33:47 MarkDuplicates Tracking 1378004 as yet unmatched pairs. 23047 records in RAM.
INFO 2026-06-08 09:33:49 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 2s. Last read position: chr2:215,431,857
INFO 2026-06-08 09:33:49 MarkDuplicates Tracking 1378849 as yet unmatched pairs. 23884 records in RAM.
INFO 2026-06-08 09:33:51 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 2s. Last read position: chr2:218,275,600
INFO 2026-06-08 09:33:51 MarkDuplicates Tracking 1371758 as yet unmatched pairs. 16778 records in RAM.
INFO 2026-06-08 09:33:54 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 2s. Last read position: chr2:219,282,878
INFO 2026-06-08 09:33:54 MarkDuplicates Tracking 1368606 as yet unmatched pairs. 13620 records in RAM.
INFO 2026-06-08 09:33:56 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 2s. Last read position: chr2:229,880,001
INFO 2026-06-08 09:33:56 MarkDuplicates Tracking 1366622 as yet unmatched pairs. 11613 records in RAM.
INFO 2026-06-08 09:33:58 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr2:231,711,410
INFO 2026-06-08 09:33:58 MarkDuplicates Tracking 1364228 as yet unmatched pairs. 9219 records in RAM.
INFO 2026-06-08 09:34:00 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 2s. Last read position: chr2:237,344,445
INFO 2026-06-08 09:34:00 MarkDuplicates Tracking 1361374 as yet unmatched pairs. 6362 records in RAM.
INFO 2026-06-08 09:34:02 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 2s. Last read position: chr2:239,993,669
INFO 2026-06-08 09:34:02 MarkDuplicates Tracking 1358422 as yet unmatched pairs. 3400 records in RAM.
INFO 2026-06-08 09:34:04 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 2s. Last read position: chr2:241,633,842
INFO 2026-06-08 09:34:04 MarkDuplicates Tracking 1355609 as yet unmatched pairs. 576 records in RAM.
INFO 2026-06-08 09:34:07 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 3s. Last read position: chr3:9,969,741
INFO 2026-06-08 09:34:07 MarkDuplicates Tracking 1352792 as yet unmatched pairs. 75696 records in RAM.
INFO 2026-06-08 09:34:10 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 2s. Last read position: chr3:13,360,321
INFO 2026-06-08 09:34:10 MarkDuplicates Tracking 1350253 as yet unmatched pairs. 73142 records in RAM.
INFO 2026-06-08 09:34:12 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:25,636,117
INFO 2026-06-08 09:34:12 MarkDuplicates Tracking 1347819 as yet unmatched pairs. 70700 records in RAM.
INFO 2026-06-08 09:34:14 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 2s. Last read position: chr3:36,895,708
INFO 2026-06-08 09:34:14 MarkDuplicates Tracking 1345244 as yet unmatched pairs. 68082 records in RAM.
INFO 2026-06-08 09:34:16 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 2s. Last read position: chr3:40,458,715
INFO 2026-06-08 09:34:16 MarkDuplicates Tracking 1344411 as yet unmatched pairs. 67245 records in RAM.
INFO 2026-06-08 09:34:18 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 2s. Last read position: chr3:44,567,937
INFO 2026-06-08 09:34:18 MarkDuplicates Tracking 1340078 as yet unmatched pairs. 62896 records in RAM.
INFO 2026-06-08 09:34:21 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 2s. Last read position: chr3:47,122,409
INFO 2026-06-08 09:34:21 MarkDuplicates Tracking 1337798 as yet unmatched pairs. 60614 records in RAM.
INFO 2026-06-08 09:34:24 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 2s. Last read position: chr3:48,413,747
INFO 2026-06-08 09:34:24 MarkDuplicates Tracking 1334921 as yet unmatched pairs. 57726 records in RAM.
INFO 2026-06-08 09:34:26 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 2s. Last read position: chr3:48,609,217
INFO 2026-06-08 09:34:26 MarkDuplicates Tracking 1331815 as yet unmatched pairs. 54616 records in RAM.
INFO 2026-06-08 09:34:28 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 2s. Last read position: chr3:49,123,927
INFO 2026-06-08 09:34:28 MarkDuplicates Tracking 1328859 as yet unmatched pairs. 51654 records in RAM.
INFO 2026-06-08 09:34:30 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 2s. Last read position: chr3:49,968,523
INFO 2026-06-08 09:34:30 MarkDuplicates Tracking 1326316 as yet unmatched pairs. 49110 records in RAM.
INFO 2026-06-08 09:34:32 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 2s. Last read position: chr3:51,993,899
INFO 2026-06-08 09:34:32 MarkDuplicates Tracking 1323903 as yet unmatched pairs. 46681 records in RAM.
INFO 2026-06-08 09:34:34 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 2s. Last read position: chr3:52,706,692
INFO 2026-06-08 09:34:34 MarkDuplicates Tracking 1321136 as yet unmatched pairs. 43907 records in RAM.
INFO 2026-06-08 09:34:37 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 2s. Last read position: chr3:58,097,918
INFO 2026-06-08 09:34:37 MarkDuplicates Tracking 1317999 as yet unmatched pairs. 40756 records in RAM.
INFO 2026-06-08 09:34:39 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 2s. Last read position: chr3:66,417,142
INFO 2026-06-08 09:34:39 MarkDuplicates Tracking 1315369 as yet unmatched pairs. 38108 records in RAM.
INFO 2026-06-08 09:34:41 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 2s. Last read position: chr3:99,849,427
INFO 2026-06-08 09:34:41 MarkDuplicates Tracking 1313520 as yet unmatched pairs. 36253 records in RAM.
INFO 2026-06-08 09:34:43 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 2s. Last read position: chr3:111,884,703
INFO 2026-06-08 09:34:43 MarkDuplicates Tracking 1310607 as yet unmatched pairs. 33335 records in RAM.
INFO 2026-06-08 09:34:45 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 2s. Last read position: chr3:121,696,603
INFO 2026-06-08 09:34:45 MarkDuplicates Tracking 1308129 as yet unmatched pairs. 30828 records in RAM.
INFO 2026-06-08 09:34:47 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 2s. Last read position: chr3:124,908,163
INFO 2026-06-08 09:34:47 MarkDuplicates Tracking 1307070 as yet unmatched pairs. 29757 records in RAM.
INFO 2026-06-08 09:34:50 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 2s. Last read position: chr3:128,625,578
INFO 2026-06-08 09:34:50 MarkDuplicates Tracking 1302927 as yet unmatched pairs. 25587 records in RAM.
INFO 2026-06-08 09:34:52 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 2s. Last read position: chr3:131,498,224
INFO 2026-06-08 09:34:52 MarkDuplicates Tracking 1300468 as yet unmatched pairs. 23118 records in RAM.
INFO 2026-06-08 09:34:54 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 2s. Last read position: chr3:141,443,111
INFO 2026-06-08 09:34:54 MarkDuplicates Tracking 1297538 as yet unmatched pairs. 20172 records in RAM.
INFO 2026-06-08 09:34:56 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 2s. Last read position: chr3:150,410,721
INFO 2026-06-08 09:34:56 MarkDuplicates Tracking 1295429 as yet unmatched pairs. 18048 records in RAM.
INFO 2026-06-08 09:34:58 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 2s. Last read position: chr3:167,695,682
INFO 2026-06-08 09:34:58 MarkDuplicates Tracking 1292692 as yet unmatched pairs. 15298 records in RAM.
INFO 2026-06-08 09:35:00 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 2s. Last read position: chr3:179,201,301
INFO 2026-06-08 09:35:00 MarkDuplicates Tracking 1290300 as yet unmatched pairs. 12878 records in RAM.
INFO 2026-06-08 09:35:03 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 2s. Last read position: chr3:184,301,876
INFO 2026-06-08 09:35:03 MarkDuplicates Tracking 1287720 as yet unmatched pairs. 10295 records in RAM.
INFO 2026-06-08 09:35:05 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 2s. Last read position: chr3:186,048,782
INFO 2026-06-08 09:35:05 MarkDuplicates Tracking 1284979 as yet unmatched pairs. 7552 records in RAM.
INFO 2026-06-08 09:35:08 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 2s. Last read position: chr3:194,431,801
INFO 2026-06-08 09:35:08 MarkDuplicates Tracking 1283113 as yet unmatched pairs. 5670 records in RAM.
INFO 2026-06-08 09:35:10 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 2s. Last read position: chr3:195,781,027
INFO 2026-06-08 09:35:10 MarkDuplicates Tracking 1282318 as yet unmatched pairs. 4873 records in RAM.
INFO 2026-06-08 09:35:11 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr3:195,789,168
INFO 2026-06-08 09:35:11 MarkDuplicates Tracking 1280019 as yet unmatched pairs. 2568 records in RAM.
INFO 2026-06-08 09:35:14 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 2s. Last read position: chr3:197,996,251
INFO 2026-06-08 09:35:14 MarkDuplicates Tracking 1277516 as yet unmatched pairs. 50 records in RAM.
INFO 2026-06-08 09:35:16 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 2s. Last read position: chr4:1,816,806
INFO 2026-06-08 09:35:16 MarkDuplicates Tracking 1274291 as yet unmatched pairs. 34231 records in RAM.
INFO 2026-06-08 09:35:18 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 2s. Last read position: chr4:6,709,229
INFO 2026-06-08 09:35:18 MarkDuplicates Tracking 1271531 as yet unmatched pairs. 31462 records in RAM.
INFO 2026-06-08 09:35:20 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr4:17,804,010
INFO 2026-06-08 09:35:20 MarkDuplicates Tracking 1269186 as yet unmatched pairs. 29105 records in RAM.
INFO 2026-06-08 09:35:23 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 2s. Last read position: chr4:39,849,533
INFO 2026-06-08 09:35:23 MarkDuplicates Tracking 1266883 as yet unmatched pairs. 26792 records in RAM.
INFO 2026-06-08 09:35:25 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 2s. Last read position: chr4:54,278,004
INFO 2026-06-08 09:35:25 MarkDuplicates Tracking 1264998 as yet unmatched pairs. 24880 records in RAM.
INFO 2026-06-08 09:35:27 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 2s. Last read position: chr4:68,930,002
INFO 2026-06-08 09:35:27 MarkDuplicates Tracking 1261645 as yet unmatched pairs. 21520 records in RAM.
INFO 2026-06-08 09:35:29 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 2s. Last read position: chr4:74,037,240
INFO 2026-06-08 09:35:29 MarkDuplicates Tracking 1259642 as yet unmatched pairs. 19516 records in RAM.
INFO 2026-06-08 09:35:31 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr4:78,859,592
INFO 2026-06-08 09:35:31 MarkDuplicates Tracking 1256879 as yet unmatched pairs. 16739 records in RAM.
INFO 2026-06-08 09:35:33 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 2s. Last read position: chr4:87,975,730
INFO 2026-06-08 09:35:33 MarkDuplicates Tracking 1254528 as yet unmatched pairs. 14373 records in RAM.
INFO 2026-06-08 09:35:36 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 2s. Last read position: chr4:105,967,379
INFO 2026-06-08 09:35:36 MarkDuplicates Tracking 1252322 as yet unmatched pairs. 12140 records in RAM.
INFO 2026-06-08 09:35:38 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr4:122,264,332
INFO 2026-06-08 09:35:38 MarkDuplicates Tracking 1249835 as yet unmatched pairs. 9647 records in RAM.
INFO 2026-06-08 09:35:41 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 2s. Last read position: chr4:143,911,721
INFO 2026-06-08 09:35:41 MarkDuplicates Tracking 1247376 as yet unmatched pairs. 7179 records in RAM.
INFO 2026-06-08 09:35:43 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 2s. Last read position: chr4:153,704,466
INFO 2026-06-08 09:35:43 MarkDuplicates Tracking 1245088 as yet unmatched pairs. 4876 records in RAM.
INFO 2026-06-08 09:35:45 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 2s. Last read position: chr4:183,447,201
INFO 2026-06-08 09:35:45 MarkDuplicates Tracking 1242621 as yet unmatched pairs. 2387 records in RAM.
INFO 2026-06-08 09:35:48 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 2s. Last read position: chr5:251,429
INFO 2026-06-08 09:35:48 MarkDuplicates Tracking 1240577 as yet unmatched pairs. 65842 records in RAM.
INFO 2026-06-08 09:35:50 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 2s. Last read position: chr5:6,604,242
INFO 2026-06-08 09:35:50 MarkDuplicates Tracking 1237256 as yet unmatched pairs. 62516 records in RAM.
INFO 2026-06-08 09:35:52 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 2s. Last read position: chr5:14,330,812
INFO 2026-06-08 09:35:52 MarkDuplicates Tracking 1234632 as yet unmatched pairs. 59864 records in RAM.
INFO 2026-06-08 09:35:54 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 2s. Last read position: chr5:14,504,552
INFO 2026-06-08 09:35:54 MarkDuplicates Tracking 1232196 as yet unmatched pairs. 57424 records in RAM.
INFO 2026-06-08 09:35:56 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 2s. Last read position: chr5:33,162,176
INFO 2026-06-08 09:35:56 MarkDuplicates Tracking 1229045 as yet unmatched pairs. 54241 records in RAM.
INFO 2026-06-08 09:35:58 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 2s. Last read position: chr5:39,201,854
INFO 2026-06-08 09:35:58 MarkDuplicates Tracking 1226738 as yet unmatched pairs. 51908 records in RAM.
INFO 2026-06-08 09:36:01 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 2s. Last read position: chr5:55,328,765
INFO 2026-06-08 09:36:01 MarkDuplicates Tracking 1224471 as yet unmatched pairs. 49614 records in RAM.
INFO 2026-06-08 09:36:03 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 2s. Last read position: chr5:69,545,109
INFO 2026-06-08 09:36:03 MarkDuplicates Tracking 1222135 as yet unmatched pairs. 47256 records in RAM.
INFO 2026-06-08 09:36:05 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr5:74,720,663
INFO 2026-06-08 09:36:05 MarkDuplicates Tracking 1220570 as yet unmatched pairs. 45684 records in RAM.
INFO 2026-06-08 09:36:07 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 2s. Last read position: chr5:83,520,804
INFO 2026-06-08 09:36:07 MarkDuplicates Tracking 1217814 as yet unmatched pairs. 42919 records in RAM.
INFO 2026-06-08 09:36:09 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 2s. Last read position: chr5:96,915,732
INFO 2026-06-08 09:36:09 MarkDuplicates Tracking 1215262 as yet unmatched pairs. 40363 records in RAM.
INFO 2026-06-08 09:36:11 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 2s. Last read position: chr5:122,027,049
INFO 2026-06-08 09:36:11 MarkDuplicates Tracking 1212847 as yet unmatched pairs. 37922 records in RAM.
INFO 2026-06-08 09:36:13 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 2s. Last read position: chr5:132,886,310
INFO 2026-06-08 09:36:13 MarkDuplicates Tracking 1210243 as yet unmatched pairs. 35313 records in RAM.
INFO 2026-06-08 09:36:16 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 2s. Last read position: chr5:136,059,176
INFO 2026-06-08 09:36:16 MarkDuplicates Tracking 1208389 as yet unmatched pairs. 33452 records in RAM.
INFO 2026-06-08 09:36:18 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 2s. Last read position: chr5:139,614,913
INFO 2026-06-08 09:36:18 MarkDuplicates Tracking 1205550 as yet unmatched pairs. 30603 records in RAM.
INFO 2026-06-08 09:36:20 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr5:141,850,503
INFO 2026-06-08 09:36:20 MarkDuplicates Tracking 1202612 as yet unmatched pairs. 27604 records in RAM.
INFO 2026-06-08 09:36:22 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 2s. Last read position: chr5:149,832,916
INFO 2026-06-08 09:36:22 MarkDuplicates Tracking 1200195 as yet unmatched pairs. 25156 records in RAM.
INFO 2026-06-08 09:36:24 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr5:150,375,142
INFO 2026-06-08 09:36:24 MarkDuplicates Tracking 1197885 as yet unmatched pairs. 22837 records in RAM.
INFO 2026-06-08 09:36:26 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 2s. Last read position: chr5:150,406,287
INFO 2026-06-08 09:36:26 MarkDuplicates Tracking 1205422 as yet unmatched pairs. 30374 records in RAM.
INFO 2026-06-08 09:36:29 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 2s. Last read position: chr5:151,663,529
INFO 2026-06-08 09:36:29 MarkDuplicates Tracking 1193544 as yet unmatched pairs. 18491 records in RAM.
INFO 2026-06-08 09:36:31 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 2s. Last read position: chr5:160,565,627
INFO 2026-06-08 09:36:31 MarkDuplicates Tracking 1189487 as yet unmatched pairs. 14428 records in RAM.
INFO 2026-06-08 09:36:33 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 2s. Last read position: chr5:171,391,744
INFO 2026-06-08 09:36:33 MarkDuplicates Tracking 1191431 as yet unmatched pairs. 16363 records in RAM.
INFO 2026-06-08 09:36:35 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 2s. Last read position: chr5:173,890,101
INFO 2026-06-08 09:36:35 MarkDuplicates Tracking 1185030 as yet unmatched pairs. 9955 records in RAM.
INFO 2026-06-08 09:36:37 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 2s. Last read position: chr5:177,512,348
INFO 2026-06-08 09:36:37 MarkDuplicates Tracking 1182248 as yet unmatched pairs. 7170 records in RAM.
INFO 2026-06-08 09:36:39 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 2s. Last read position: chr5:179,766,175
INFO 2026-06-08 09:36:39 MarkDuplicates Tracking 1179968 as yet unmatched pairs. 4875 records in RAM.
INFO 2026-06-08 09:36:42 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 2s. Last read position: chr5:179,864,084
INFO 2026-06-08 09:36:42 MarkDuplicates Tracking 1176994 as yet unmatched pairs. 1900 records in RAM.
INFO 2026-06-08 09:36:44 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 2s. Last read position: chr6:2,836,108
INFO 2026-06-08 09:36:44 MarkDuplicates Tracking 1174335 as yet unmatched pairs. 77180 records in RAM.
INFO 2026-06-08 09:36:46 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 2s. Last read position: chr6:7,289,772
INFO 2026-06-08 09:36:46 MarkDuplicates Tracking 1171956 as yet unmatched pairs. 74788 records in RAM.
INFO 2026-06-08 09:36:49 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 2s. Last read position: chr6:15,520,342
INFO 2026-06-08 09:36:49 MarkDuplicates Tracking 1168737 as yet unmatched pairs. 71557 records in RAM.
INFO 2026-06-08 09:36:51 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 2s. Last read position: chr6:26,055,963
INFO 2026-06-08 09:36:51 MarkDuplicates Tracking 1166384 as yet unmatched pairs. 69186 records in RAM.
INFO 2026-06-08 09:36:54 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 2s. Last read position: chr6:26,458,079
INFO 2026-06-08 09:36:54 MarkDuplicates Tracking 1163624 as yet unmatched pairs. 66421 records in RAM.
INFO 2026-06-08 09:36:55 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr6:27,892,921
INFO 2026-06-08 09:36:55 MarkDuplicates Tracking 1161224 as yet unmatched pairs. 64017 records in RAM.
INFO 2026-06-08 09:36:57 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 2s. Last read position: chr6:30,067,214
INFO 2026-06-08 09:36:57 MarkDuplicates Tracking 1158472 as yet unmatched pairs. 61264 records in RAM.
INFO 2026-06-08 09:37:00 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 2s. Last read position: chr6:30,888,981
INFO 2026-06-08 09:37:00 MarkDuplicates Tracking 1156103 as yet unmatched pairs. 58893 records in RAM.
INFO 2026-06-08 09:37:02 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr6:31,540,357
INFO 2026-06-08 09:37:02 MarkDuplicates Tracking 1153793 as yet unmatched pairs. 56577 records in RAM.
INFO 2026-06-08 09:37:04 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 2s. Last read position: chr6:31,733,937
INFO 2026-06-08 09:37:04 MarkDuplicates Tracking 1151092 as yet unmatched pairs. 53875 records in RAM.
INFO 2026-06-08 09:37:06 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr6:31,874,929
INFO 2026-06-08 09:37:06 MarkDuplicates Tracking 1148880 as yet unmatched pairs. 51659 records in RAM.
INFO 2026-06-08 09:37:08 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 2s. Last read position: chr6:32,530,125
INFO 2026-06-08 09:37:08 MarkDuplicates Tracking 1146514 as yet unmatched pairs. 49292 records in RAM.
INFO 2026-06-08 09:37:10 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 2s. Last read position: chr6:33,289,114
INFO 2026-06-08 09:37:10 MarkDuplicates Tracking 1143343 as yet unmatched pairs. 46115 records in RAM.
INFO 2026-06-08 09:37:12 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 2s. Last read position: chr6:33,686,474
INFO 2026-06-08 09:37:12 MarkDuplicates Tracking 1140864 as yet unmatched pairs. 43634 records in RAM.
INFO 2026-06-08 09:37:14 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 2s. Last read position: chr6:36,207,363
INFO 2026-06-08 09:37:14 MarkDuplicates Tracking 1137829 as yet unmatched pairs. 40583 records in RAM.
INFO 2026-06-08 09:37:17 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 2s. Last read position: chr6:42,142,323
INFO 2026-06-08 09:37:17 MarkDuplicates Tracking 1135252 as yet unmatched pairs. 37989 records in RAM.
INFO 2026-06-08 09:37:19 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 2s. Last read position: chr6:43,551,314
INFO 2026-06-08 09:37:19 MarkDuplicates Tracking 1132676 as yet unmatched pairs. 35412 records in RAM.
INFO 2026-06-08 09:37:22 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 2s. Last read position: chr6:47,285,960
INFO 2026-06-08 09:37:22 MarkDuplicates Tracking 1130315 as yet unmatched pairs. 33029 records in RAM.
INFO 2026-06-08 09:37:24 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 2s. Last read position: chr6:57,101,732
INFO 2026-06-08 09:37:24 MarkDuplicates Tracking 1127447 as yet unmatched pairs. 30131 records in RAM.
INFO 2026-06-08 09:37:26 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 2s. Last read position: chr6:75,177,802
INFO 2026-06-08 09:37:26 MarkDuplicates Tracking 1125832 as yet unmatched pairs. 28500 records in RAM.
INFO 2026-06-08 09:37:28 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 2s. Last read position: chr6:85,637,275
INFO 2026-06-08 09:37:28 MarkDuplicates Tracking 1122971 as yet unmatched pairs. 25639 records in RAM.
INFO 2026-06-08 09:37:30 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 2s. Last read position: chr6:100,652,749
INFO 2026-06-08 09:37:30 MarkDuplicates Tracking 1120341 as yet unmatched pairs. 22991 records in RAM.
INFO 2026-06-08 09:37:32 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr6:109,447,379
INFO 2026-06-08 09:37:32 MarkDuplicates Tracking 1117960 as yet unmatched pairs. 20599 records in RAM.
INFO 2026-06-08 09:37:35 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 2s. Last read position: chr6:117,694,038
INFO 2026-06-08 09:37:35 MarkDuplicates Tracking 1115164 as yet unmatched pairs. 17792 records in RAM.
INFO 2026-06-08 09:37:37 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 2s. Last read position: chr6:133,984,374
INFO 2026-06-08 09:37:37 MarkDuplicates Tracking 1112831 as yet unmatched pairs. 15439 records in RAM.
INFO 2026-06-08 09:37:39 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr6:138,263,007
INFO 2026-06-08 09:37:39 MarkDuplicates Tracking 1110232 as yet unmatched pairs. 12823 records in RAM.
INFO 2026-06-08 09:37:41 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 2s. Last read position: chr6:149,378,175
INFO 2026-06-08 09:37:41 MarkDuplicates Tracking 1107682 as yet unmatched pairs. 10260 records in RAM.
INFO 2026-06-08 09:37:43 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 2s. Last read position: chr6:157,190,099
INFO 2026-06-08 09:37:43 MarkDuplicates Tracking 1105045 as yet unmatched pairs. 7613 records in RAM.
INFO 2026-06-08 09:37:45 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 2s. Last read position: chr6:159,221,667
INFO 2026-06-08 09:37:45 MarkDuplicates Tracking 1102258 as yet unmatched pairs. 4823 records in RAM.
INFO 2026-06-08 09:37:47 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 2s. Last read position: chr6:163,569,926
INFO 2026-06-08 09:37:47 MarkDuplicates Tracking 1100307 as yet unmatched pairs. 2854 records in RAM.
INFO 2026-06-08 09:37:51 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 3s. Last read position: chr7:842,019
INFO 2026-06-08 09:37:51 MarkDuplicates Tracking 1097520 as yet unmatched pairs. 113852 records in RAM.
INFO 2026-06-08 09:37:53 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 2s. Last read position: chr7:2,632,215
INFO 2026-06-08 09:37:53 MarkDuplicates Tracking 1093860 as yet unmatched pairs. 110178 records in RAM.
INFO 2026-06-08 09:37:55 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 2s. Last read position: chr7:5,505,522
INFO 2026-06-08 09:37:55 MarkDuplicates Tracking 1090575 as yet unmatched pairs. 106886 records in RAM.
INFO 2026-06-08 09:37:57 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 2s. Last read position: chr7:5,528,569
INFO 2026-06-08 09:37:57 MarkDuplicates Tracking 1096530 as yet unmatched pairs. 112831 records in RAM.
INFO 2026-06-08 09:37:59 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 2s. Last read position: chr7:6,171,232
INFO 2026-06-08 09:37:59 MarkDuplicates Tracking 1085238 as yet unmatched pairs. 101532 records in RAM.
INFO 2026-06-08 09:38:02 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 2s. Last read position: chr7:18,591,517
INFO 2026-06-08 09:38:02 MarkDuplicates Tracking 1082745 as yet unmatched pairs. 99026 records in RAM.
INFO 2026-06-08 09:38:04 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 2s. Last read position: chr7:27,172,021
INFO 2026-06-08 09:38:04 MarkDuplicates Tracking 1080509 as yet unmatched pairs. 96785 records in RAM.
INFO 2026-06-08 09:38:06 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 2s. Last read position: chr7:37,222,662
INFO 2026-06-08 09:38:06 MarkDuplicates Tracking 1077775 as yet unmatched pairs. 94033 records in RAM.
INFO 2026-06-08 09:38:08 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 2s. Last read position: chr7:44,114,825
INFO 2026-06-08 09:38:08 MarkDuplicates Tracking 1075390 as yet unmatched pairs. 91641 records in RAM.
INFO 2026-06-08 09:38:10 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 2s. Last read position: chr7:47,368,371
INFO 2026-06-08 09:38:10 MarkDuplicates Tracking 1072530 as yet unmatched pairs. 88775 records in RAM.
INFO 2026-06-08 09:38:12 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 2s. Last read position: chr7:57,004,312
INFO 2026-06-08 09:38:12 MarkDuplicates Tracking 1069771 as yet unmatched pairs. 86007 records in RAM.
INFO 2026-06-08 09:38:15 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 2s. Last read position: chr7:72,942,800
INFO 2026-06-08 09:38:15 MarkDuplicates Tracking 1067882 as yet unmatched pairs. 84102 records in RAM.
INFO 2026-06-08 09:38:16 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr7:73,683,649
INFO 2026-06-08 09:38:16 MarkDuplicates Tracking 1066390 as yet unmatched pairs. 82608 records in RAM.
INFO 2026-06-08 09:38:18 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 2s. Last read position: chr7:75,018,022
INFO 2026-06-08 09:38:18 MarkDuplicates Tracking 1063881 as yet unmatched pairs. 80098 records in RAM.
INFO 2026-06-08 09:38:20 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 2s. Last read position: chr7:75,985,117
INFO 2026-06-08 09:38:20 MarkDuplicates Tracking 1062006 as yet unmatched pairs. 78214 records in RAM.
INFO 2026-06-08 09:38:22 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr7:77,055,218
INFO 2026-06-08 09:38:22 MarkDuplicates Tracking 1059382 as yet unmatched pairs. 75585 records in RAM.
INFO 2026-06-08 09:38:25 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 2s. Last read position: chr7:92,040,777
INFO 2026-06-08 09:38:25 MarkDuplicates Tracking 1057275 as yet unmatched pairs. 73471 records in RAM.
INFO 2026-06-08 09:38:27 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 2s. Last read position: chr7:94,406,273
INFO 2026-06-08 09:38:27 MarkDuplicates Tracking 1055874 as yet unmatched pairs. 72051 records in RAM.
INFO 2026-06-08 09:38:29 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 2s. Last read position: chr7:98,193,835
INFO 2026-06-08 09:38:29 MarkDuplicates Tracking 1052076 as yet unmatched pairs. 68244 records in RAM.
INFO 2026-06-08 09:38:31 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 2s. Last read position: chr7:99,562,374
INFO 2026-06-08 09:38:31 MarkDuplicates Tracking 1049328 as yet unmatched pairs. 65489 records in RAM.
INFO 2026-06-08 09:38:33 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr7:100,478,074
INFO 2026-06-08 09:38:33 MarkDuplicates Tracking 1046567 as yet unmatched pairs. 62724 records in RAM.
INFO 2026-06-08 09:38:35 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 2s. Last read position: chr7:100,969,589
INFO 2026-06-08 09:38:35 MarkDuplicates Tracking 1045490 as yet unmatched pairs. 61639 records in RAM.
INFO 2026-06-08 09:38:38 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 2s. Last read position: chr7:100,992,593
INFO 2026-06-08 09:38:38 MarkDuplicates Tracking 1043151 as yet unmatched pairs. 59298 records in RAM.
INFO 2026-06-08 09:38:39 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,139
INFO 2026-06-08 09:38:39 MarkDuplicates Tracking 1045803 as yet unmatched pairs. 61949 records in RAM.
INFO 2026-06-08 09:38:41 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 2s. Last read position: chr7:100,993,615
INFO 2026-06-08 09:38:41 MarkDuplicates Tracking 1042513 as yet unmatched pairs. 58659 records in RAM.
INFO 2026-06-08 09:38:43 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,886
INFO 2026-06-08 09:38:43 MarkDuplicates Tracking 1043213 as yet unmatched pairs. 59359 records in RAM.
INFO 2026-06-08 09:38:44 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,460
INFO 2026-06-08 09:38:44 MarkDuplicates Tracking 1041457 as yet unmatched pairs. 57603 records in RAM.
INFO 2026-06-08 09:38:46 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,954
INFO 2026-06-08 09:38:46 MarkDuplicates Tracking 1041189 as yet unmatched pairs. 57335 records in RAM.
INFO 2026-06-08 09:38:47 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,247
INFO 2026-06-08 09:38:47 MarkDuplicates Tracking 1042561 as yet unmatched pairs. 58707 records in RAM.
INFO 2026-06-08 09:38:49 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,010
INFO 2026-06-08 09:38:49 MarkDuplicates Tracking 1041127 as yet unmatched pairs. 57273 records in RAM.
INFO 2026-06-08 09:38:50 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,283
INFO 2026-06-08 09:38:50 MarkDuplicates Tracking 1041284 as yet unmatched pairs. 57430 records in RAM.
INFO 2026-06-08 09:38:52 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,450
INFO 2026-06-08 09:38:52 MarkDuplicates Tracking 1052709 as yet unmatched pairs. 68853 records in RAM.
INFO 2026-06-08 09:38:53 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,787
INFO 2026-06-08 09:38:53 MarkDuplicates Tracking 1039500 as yet unmatched pairs. 55633 records in RAM.
INFO 2026-06-08 09:38:55 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 2s. Last read position: chr7:100,996,974
INFO 2026-06-08 09:38:55 MarkDuplicates Tracking 1048006 as yet unmatched pairs. 64139 records in RAM.
INFO 2026-06-08 09:38:57 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 2s. Last read position: chr7:100,997,239
INFO 2026-06-08 09:38:57 MarkDuplicates Tracking 1035791 as yet unmatched pairs. 51924 records in RAM.
INFO 2026-06-08 09:38:59 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,575
INFO 2026-06-08 09:38:59 MarkDuplicates Tracking 1037921 as yet unmatched pairs. 54048 records in RAM.
INFO 2026-06-08 09:39:01 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,920
INFO 2026-06-08 09:39:01 MarkDuplicates Tracking 1049373 as yet unmatched pairs. 65498 records in RAM.
INFO 2026-06-08 09:39:03 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,176
INFO 2026-06-08 09:39:03 MarkDuplicates Tracking 1034438 as yet unmatched pairs. 50563 records in RAM.
INFO 2026-06-08 09:39:04 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,397
INFO 2026-06-08 09:39:04 MarkDuplicates Tracking 1032587 as yet unmatched pairs. 48712 records in RAM.
INFO 2026-06-08 09:39:05 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,650
INFO 2026-06-08 09:39:05 MarkDuplicates Tracking 1057736 as yet unmatched pairs. 73861 records in RAM.
INFO 2026-06-08 09:39:07 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,914
INFO 2026-06-08 09:39:07 MarkDuplicates Tracking 1031358 as yet unmatched pairs. 47483 records in RAM.
INFO 2026-06-08 09:39:08 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,375
INFO 2026-06-08 09:39:08 MarkDuplicates Tracking 1033254 as yet unmatched pairs. 49379 records in RAM.
INFO 2026-06-08 09:39:10 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,745
INFO 2026-06-08 09:39:10 MarkDuplicates Tracking 1034683 as yet unmatched pairs. 50805 records in RAM.
INFO 2026-06-08 09:39:12 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,081
INFO 2026-06-08 09:39:12 MarkDuplicates Tracking 1034010 as yet unmatched pairs. 50132 records in RAM.
INFO 2026-06-08 09:39:14 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,459
INFO 2026-06-08 09:39:14 MarkDuplicates Tracking 1032484 as yet unmatched pairs. 48592 records in RAM.
INFO 2026-06-08 09:39:15 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,824
INFO 2026-06-08 09:39:15 MarkDuplicates Tracking 1043121 as yet unmatched pairs. 59227 records in RAM.
INFO 2026-06-08 09:39:17 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,058
INFO 2026-06-08 09:39:17 MarkDuplicates Tracking 1029238 as yet unmatched pairs. 45337 records in RAM.
INFO 2026-06-08 09:39:19 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,356
INFO 2026-06-08 09:39:19 MarkDuplicates Tracking 1028756 as yet unmatched pairs. 44854 records in RAM.
INFO 2026-06-08 09:39:20 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,579
INFO 2026-06-08 09:39:20 MarkDuplicates Tracking 1024557 as yet unmatched pairs. 40655 records in RAM.
INFO 2026-06-08 09:39:22 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,848
INFO 2026-06-08 09:39:22 MarkDuplicates Tracking 1025984 as yet unmatched pairs. 42082 records in RAM.
INFO 2026-06-08 09:39:23 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,355
INFO 2026-06-08 09:39:23 MarkDuplicates Tracking 1030229 as yet unmatched pairs. 46327 records in RAM.
INFO 2026-06-08 09:39:25 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,898
INFO 2026-06-08 09:39:25 MarkDuplicates Tracking 1036299 as yet unmatched pairs. 52393 records in RAM.
INFO 2026-06-08 09:39:26 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,705
INFO 2026-06-08 09:39:26 MarkDuplicates Tracking 1018515 as yet unmatched pairs. 34604 records in RAM.
INFO 2026-06-08 09:39:28 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr7:101,004,134
INFO 2026-06-08 09:39:28 MarkDuplicates Tracking 1017765 as yet unmatched pairs. 33854 records in RAM.
INFO 2026-06-08 09:39:30 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 2s. Last read position: chr7:101,216,226
INFO 2026-06-08 09:39:30 MarkDuplicates Tracking 1015612 as yet unmatched pairs. 31691 records in RAM.
INFO 2026-06-08 09:39:32 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr7:102,655,071
INFO 2026-06-08 09:39:32 MarkDuplicates Tracking 1014200 as yet unmatched pairs. 30277 records in RAM.
INFO 2026-06-08 09:39:34 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 2s. Last read position: chr7:106,284,826
INFO 2026-06-08 09:39:34 MarkDuplicates Tracking 1012347 as yet unmatched pairs. 28412 records in RAM.
INFO 2026-06-08 09:39:36 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 2s. Last read position: chr7:116,250,230
INFO 2026-06-08 09:39:36 MarkDuplicates Tracking 1009678 as yet unmatched pairs. 25731 records in RAM.
INFO 2026-06-08 09:39:38 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 2s. Last read position: chr7:122,393,559
INFO 2026-06-08 09:39:38 MarkDuplicates Tracking 1007095 as yet unmatched pairs. 23134 records in RAM.
INFO 2026-06-08 09:39:40 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 2s. Last read position: chr7:127,887,904
INFO 2026-06-08 09:39:40 MarkDuplicates Tracking 1008322 as yet unmatched pairs. 24359 records in RAM.
INFO 2026-06-08 09:39:42 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 2s. Last read position: chr7:129,422,839
INFO 2026-06-08 09:39:42 MarkDuplicates Tracking 1002346 as yet unmatched pairs. 18370 records in RAM.
INFO 2026-06-08 09:39:45 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 2s. Last read position: chr7:137,885,005
INFO 2026-06-08 09:39:45 MarkDuplicates Tracking 1000658 as yet unmatched pairs. 16674 records in RAM.
INFO 2026-06-08 09:39:47 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 2s. Last read position: chr7:139,573,343
INFO 2026-06-08 09:39:47 MarkDuplicates Tracking 997186 as yet unmatched pairs. 13200 records in RAM.
INFO 2026-06-08 09:39:49 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 2s. Last read position: chr7:143,294,596
INFO 2026-06-08 09:39:49 MarkDuplicates Tracking 994750 as yet unmatched pairs. 10756 records in RAM.
INFO 2026-06-08 09:39:51 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr7:144,377,145
INFO 2026-06-08 09:39:51 MarkDuplicates Tracking 992845 as yet unmatched pairs. 8848 records in RAM.
INFO 2026-06-08 09:39:53 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 2s. Last read position: chr7:150,791,532
INFO 2026-06-08 09:39:53 MarkDuplicates Tracking 992425 as yet unmatched pairs. 8419 records in RAM.
INFO 2026-06-08 09:39:55 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 2s. Last read position: chr7:152,144,868
INFO 2026-06-08 09:39:55 MarkDuplicates Tracking 987242 as yet unmatched pairs. 3234 records in RAM.
INFO 2026-06-08 09:39:57 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 2s. Last read position: chr7:158,133,776
INFO 2026-06-08 09:39:57 MarkDuplicates Tracking 984626 as yet unmatched pairs. 610 records in RAM.
INFO 2026-06-08 09:40:00 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 2s. Last read position: chr8:17,230,798
INFO 2026-06-08 09:40:00 MarkDuplicates Tracking 982160 as yet unmatched pairs. 65525 records in RAM.
INFO 2026-06-08 09:40:02 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 2s. Last read position: chr8:23,259,122
INFO 2026-06-08 09:40:02 MarkDuplicates Tracking 979428 as yet unmatched pairs. 62784 records in RAM.
INFO 2026-06-08 09:40:04 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 2s. Last read position: chr8:32,727,944
INFO 2026-06-08 09:40:04 MarkDuplicates Tracking 977198 as yet unmatched pairs. 60549 records in RAM.
INFO 2026-06-08 09:40:07 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 2s. Last read position: chr8:38,331,514
INFO 2026-06-08 09:40:07 MarkDuplicates Tracking 975002 as yet unmatched pairs. 58351 records in RAM.
INFO 2026-06-08 09:40:09 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 2s. Last read position: chr8:41,509,620
INFO 2026-06-08 09:40:09 MarkDuplicates Tracking 971371 as yet unmatched pairs. 54713 records in RAM.
INFO 2026-06-08 09:40:11 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 2s. Last read position: chr8:47,819,459
INFO 2026-06-08 09:40:11 MarkDuplicates Tracking 969337 as yet unmatched pairs. 52673 records in RAM.
INFO 2026-06-08 09:40:13 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 2s. Last read position: chr8:54,147,381
INFO 2026-06-08 09:40:13 MarkDuplicates Tracking 966141 as yet unmatched pairs. 49475 records in RAM.
INFO 2026-06-08 09:40:15 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 2s. Last read position: chr8:61,714,279
INFO 2026-06-08 09:40:15 MarkDuplicates Tracking 963736 as yet unmatched pairs. 47060 records in RAM.
INFO 2026-06-08 09:40:18 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 2s. Last read position: chr8:70,586,930
INFO 2026-06-08 09:40:18 MarkDuplicates Tracking 962112 as yet unmatched pairs. 45425 records in RAM.
INFO 2026-06-08 09:40:20 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 2s. Last read position: chr8:86,342,913
INFO 2026-06-08 09:40:20 MarkDuplicates Tracking 959152 as yet unmatched pairs. 42457 records in RAM.
INFO 2026-06-08 09:40:22 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 2s. Last read position: chr8:94,853,875
INFO 2026-06-08 09:40:22 MarkDuplicates Tracking 957032 as yet unmatched pairs. 40333 records in RAM.
INFO 2026-06-08 09:40:24 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 2s. Last read position: chr8:100,703,319
INFO 2026-06-08 09:40:24 MarkDuplicates Tracking 960306 as yet unmatched pairs. 43599 records in RAM.
INFO 2026-06-08 09:40:26 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 2s. Last read position: chr8:100,923,968
INFO 2026-06-08 09:40:26 MarkDuplicates Tracking 953690 as yet unmatched pairs. 36976 records in RAM.
INFO 2026-06-08 09:40:29 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 2s. Last read position: chr8:108,235,026
INFO 2026-06-08 09:40:29 MarkDuplicates Tracking 949755 as yet unmatched pairs. 33039 records in RAM.
INFO 2026-06-08 09:40:31 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 2s. Last read position: chr8:123,349,363
INFO 2026-06-08 09:40:31 MarkDuplicates Tracking 946458 as yet unmatched pairs. 29738 records in RAM.
INFO 2026-06-08 09:40:33 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 2s. Last read position: chr8:127,738,744
INFO 2026-06-08 09:40:33 MarkDuplicates Tracking 947139 as yet unmatched pairs. 30417 records in RAM.
INFO 2026-06-08 09:40:35 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 2s. Last read position: chr8:140,371,059
INFO 2026-06-08 09:40:35 MarkDuplicates Tracking 941089 as yet unmatched pairs. 24347 records in RAM.
INFO 2026-06-08 09:40:37 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 2s. Last read position: chr8:143,579,753
INFO 2026-06-08 09:40:37 MarkDuplicates Tracking 938881 as yet unmatched pairs. 22134 records in RAM.
INFO 2026-06-08 09:40:39 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 2s. Last read position: chr8:143,858,185
INFO 2026-06-08 09:40:39 MarkDuplicates Tracking 934879 as yet unmatched pairs. 18118 records in RAM.
INFO 2026-06-08 09:40:41 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,605
INFO 2026-06-08 09:40:41 MarkDuplicates Tracking 935096 as yet unmatched pairs. 18335 records in RAM.
INFO 2026-06-08 09:40:42 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,897
INFO 2026-06-08 09:40:42 MarkDuplicates Tracking 936421 as yet unmatched pairs. 19660 records in RAM.
INFO 2026-06-08 09:40:44 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,853
INFO 2026-06-08 09:40:44 MarkDuplicates Tracking 932423 as yet unmatched pairs. 15662 records in RAM.
INFO 2026-06-08 09:40:45 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr8:143,870,234
INFO 2026-06-08 09:40:45 MarkDuplicates Tracking 931018 as yet unmatched pairs. 14253 records in RAM.
INFO 2026-06-08 09:40:47 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr8:143,923,742
INFO 2026-06-08 09:40:47 MarkDuplicates Tracking 927365 as yet unmatched pairs. 10592 records in RAM.
INFO 2026-06-08 09:40:50 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 2s. Last read position: chr8:144,098,868
INFO 2026-06-08 09:40:50 MarkDuplicates Tracking 923686 as yet unmatched pairs. 6905 records in RAM.
INFO 2026-06-08 09:40:52 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 2s. Last read position: chr8:144,398,618
INFO 2026-06-08 09:40:52 MarkDuplicates Tracking 921346 as yet unmatched pairs. 4558 records in RAM.
INFO 2026-06-08 09:40:54 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 2s. Last read position: chr8:144,850,670
INFO 2026-06-08 09:40:54 MarkDuplicates Tracking 917231 as yet unmatched pairs. 436 records in RAM.
INFO 2026-06-08 09:40:57 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 2s. Last read position: chr9:8,374,115
INFO 2026-06-08 09:40:57 MarkDuplicates Tracking 914632 as yet unmatched pairs. 58061 records in RAM.
INFO 2026-06-08 09:40:59 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr9:19,378,901
INFO 2026-06-08 09:40:59 MarkDuplicates Tracking 914014 as yet unmatched pairs. 57408 records in RAM.
INFO 2026-06-08 09:41:01 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 2s. Last read position: chr9:34,098,412
INFO 2026-06-08 09:41:01 MarkDuplicates Tracking 910066 as yet unmatched pairs. 53449 records in RAM.
INFO 2026-06-08 09:41:03 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 2s. Last read position: chr9:35,710,628
INFO 2026-06-08 09:41:03 MarkDuplicates Tracking 907062 as yet unmatched pairs. 50441 records in RAM.
INFO 2026-06-08 09:41:05 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr9:65,321,213
INFO 2026-06-08 09:41:05 MarkDuplicates Tracking 904308 as yet unmatched pairs. 47663 records in RAM.
INFO 2026-06-08 09:41:07 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 2s. Last read position: chr9:77,395,988
INFO 2026-06-08 09:41:07 MarkDuplicates Tracking 902247 as yet unmatched pairs. 45592 records in RAM.
INFO 2026-06-08 09:41:10 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 2s. Last read position: chr9:90,865,047
INFO 2026-06-08 09:41:10 MarkDuplicates Tracking 899885 as yet unmatched pairs. 43228 records in RAM.
INFO 2026-06-08 09:41:12 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 2s. Last read position: chr9:93,497,485
INFO 2026-06-08 09:41:12 MarkDuplicates Tracking 897605 as yet unmatched pairs. 40946 records in RAM.
INFO 2026-06-08 09:41:14 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 2s. Last read position: chr9:98,844,113
INFO 2026-06-08 09:41:14 MarkDuplicates Tracking 894212 as yet unmatched pairs. 37541 records in RAM.
INFO 2026-06-08 09:41:16 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 2s. Last read position: chr9:107,318,804
INFO 2026-06-08 09:41:16 MarkDuplicates Tracking 891959 as yet unmatched pairs. 35282 records in RAM.
INFO 2026-06-08 09:41:18 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 2s. Last read position: chr9:112,851,041
INFO 2026-06-08 09:41:18 MarkDuplicates Tracking 889070 as yet unmatched pairs. 32388 records in RAM.
INFO 2026-06-08 09:41:20 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 2s. Last read position: chr9:120,409,135
INFO 2026-06-08 09:41:20 MarkDuplicates Tracking 886554 as yet unmatched pairs. 29867 records in RAM.
INFO 2026-06-08 09:41:23 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 2s. Last read position: chr9:123,609,472
INFO 2026-06-08 09:41:23 MarkDuplicates Tracking 884230 as yet unmatched pairs. 27531 records in RAM.
INFO 2026-06-08 09:41:25 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 2s. Last read position: chr9:127,485,751
INFO 2026-06-08 09:41:25 MarkDuplicates Tracking 881452 as yet unmatched pairs. 24737 records in RAM.
INFO 2026-06-08 09:41:27 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 2s. Last read position: chr9:128,203,548
INFO 2026-06-08 09:41:27 MarkDuplicates Tracking 878567 as yet unmatched pairs. 21850 records in RAM.
INFO 2026-06-08 09:41:29 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 2s. Last read position: chr9:128,820,797
INFO 2026-06-08 09:41:29 MarkDuplicates Tracking 875636 as yet unmatched pairs. 18912 records in RAM.
INFO 2026-06-08 09:41:31 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 2s. Last read position: chr9:130,872,912
INFO 2026-06-08 09:41:31 MarkDuplicates Tracking 873431 as yet unmatched pairs. 16697 records in RAM.
INFO 2026-06-08 09:41:34 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 2s. Last read position: chr9:132,326,484
INFO 2026-06-08 09:41:34 MarkDuplicates Tracking 870518 as yet unmatched pairs. 13780 records in RAM.
INFO 2026-06-08 09:41:36 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 2s. Last read position: chr9:134,048,142
INFO 2026-06-08 09:41:36 MarkDuplicates Tracking 868400 as yet unmatched pairs. 11653 records in RAM.