Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/465b1127a57e0c5a7890d88dbc1e6a/aih-tih-sc-13a2f6-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/208354729682647e05d430d1f28b60/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/208354729682647e05d430d1f28b60/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
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Processed 9000000 records
Processed 10000000 records
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Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
Processed 20000000 records
Processed 21000000 records
Processed 22000000 records
Processed 23000000 records
Processed 24000000 records
Processed 25000000 records
Processed 26000000 records
Processed 27000000 records
Processed 28000000 records
Processed 29000000 records
Processed 30000000 records
Processed 31000000 records
Processed 32000000 records
Processed 33000000 records
Processed 34000000 records
Processed 35000000 records
Processed 36000000 records
Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
Processed 43000000 records
Processed 44000000 records
Processed 45000000 records
Processed 46000000 records
Processed 47000000 records
Processed 48000000 records
Processed 49000000 records
Processed 50000000 records
Processed 51000000 records
Processed 52000000 records
Processed 53000000 records
Processed 54000000 records
Processed 55000000 records
Processed 56000000 records
Processed 57000000 records
Processed 58000000 records
Processed 59000000 records
Processed 60000000 records
Processed 61000000 records
Processed 62000000 records
Processed 63000000 records
Processed 64000000 records
Processed 65000000 records
Processed 66000000 records
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Processed 68000000 records
Processed 69000000 records
Processed 70000000 records
Processed 71000000 records
Processed 72000000 records
Processed 73000000 records
Processed 74000000 records
Processed 75000000 records
Processed 76000000 records
Processed 77000000 records
Processed 78000000 records
Processed 79000000 records
Processed 80000000 records
Processed 81000000 records
Processed 82000000 records
Processed 83000000 records
Processed 84000000 records
Processed 85000000 records
Processed 86000000 records
Processed 87000000 records
Processed 88000000 records
Processed 89000000 records
Processed 90000000 records
Processed 91000000 records
Processed 92000000 records
Processed 93000000 records
Processed 94000000 records
Processed 95000000 records
Processed 96000000 records
Processed 97000000 records
Processed 98000000 records
Processed 99000000 records
Processed 100000000 records
Processed 101000000 records
Processed 102000000 records
Processed 103000000 records
Processed 104000000 records
Processed 105000000 records
Processed 106000000 records
Processed 107000000 records
Processed 108000000 records
Processed 109000000 records
Processed 110000000 records
Processed 111000000 records
Processed 112000000 records
Processed 113000000 records
Processed 114000000 records
Processed 115000000 records
Processed 116000000 records
Processed 117000000 records
Processed 118000000 records
Processed 119000000 records
Processed 120000000 records
Processed 121000000 records
Processed 122000000 records
Processed 123000000 records
Processed 124000000 records
Processed 125000000 records
Processed 126000000 records
Processed 127000000 records
Processed 128000000 records
Processed 129000000 records
Processed 130000000 records
Processed 131000000 records
Processed 132000000 records
Processed 133000000 records
Processed 134000000 records
Processed 135000000 records
Processed 136000000 records
Processed 137000000 records
Processed 138000000 records
Processed 139000000 records
Processed 140000000 records
Processed 141000000 records
Processed 142000000 records
Processed 143000000 records
Processed 144000000 records
Processed 145000000 records
Processed 146000000 records
Processed 147000000 records
Processed 148000000 records
Processed 149000000 records
Processed 150000000 records
Processed 151000000 records
Processed 152000000 records
Processed 153000000 records
Processed 154000000 records
Processed 155000000 records
Processed 156000000 records
Processed 157000000 records
Processed 158000000 records
Processed 159000000 records
Processed 160000000 records
Processed 161000000 records
Processed 162000000 records
Processed 163000000 records
Processed 164000000 records
Processed 165000000 records
Processed 166000000 records
Processed 167000000 records
Processed 168000000 records
Processed 169000000 records
Processed 170000000 records
Processed 171000000 records
Processed 172000000 records
Processed 173000000 records
Processed 174000000 records
Processed 175000000 records
Processed 176000000 records
Processed 177000000 records
Processed 178000000 records
Processed 179000000 records
Processed 180000000 records
Processed 181000000 records
Processed 182000000 records
Processed 183000000 records
Processed 184000000 records
Processed 185000000 records
Processed 186000000 records
Processed 187000000 records
Processed 188000000 records
Processed 189000000 records
Processed 190000000 records
Processed 191000000 records
Processed 192000000 records
Processed 193000000 records
Processed 194000000 records
Processed 195000000 records
Processed 196000000 records
Processed 197000000 records
Processed 198000000 records
Processed 199000000 records
Processed 200000000 records
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Processed 203000000 records
Processed 204000000 records
Processed 205000000 records
Processed 206000000 records
Processed 207000000 records
paired = 102721210
unpaired = 2065451
MERGED PAIRED END READS = 102721210
MATES PROCESSED = 207507871
TOTAL READS     = 104786661
DISTINCT READS  = 2.70593e+07
DISTINCT COUNTS = 948
MAX COUNT       = 435423
COUNTS OF 1     = 8.51236e+06
MAX TERMS       = 100
OBSERVED COUNTS (435424)
1	8512357
2	5181762
3	3719217
4	2677469
5	1898573
6	1333335
7	938957
8	662210
9	470947
10	340491
11	249775
12	187520
13	142589
14	110674
15	88095
16	71350
17	58411
18	48318
19	40976
20	34401
21	29060
22	25034
23	21520
24	18839
25	16337
26	14352
27	12631
28	11169
29	9974
30	9030
31	7938
32	6945
33	6320
34	5767
35	5213
36	4583
37	4373
38	4044
39	3690
40	3440
41	3209
42	2780
43	2715
44	2476
45	2302
46	2164
47	2088
48	1862
49	1832
50	1675
51	1641
52	1480
53	1390
54	1413
55	1301
56	1275
57	1121
58	1132
59	1057
60	1046
61	1033
62	925
63	873
64	818
65	835
66	841
67	774
68	702
69	686
70	658
71	619
72	602
73	580
74	595
75	562
76	548
77	519
78	496
79	474
80	484
81	467
82	435
83	464
84	442
85	418
86	402
87	377
88	363
89	357
90	346
91	370
92	346
93	323
94	332
95	280
96	267
97	243
98	301
99	274
100	256
101	250
102	261
103	213
104	214
105	236
106	249
107	215
108	199
109	202
110	193
111	194
112	186
113	193
114	175
115	168
116	185
117	163
118	160
119	170
120	129
121	135
122	151
123	143
124	155
125	140
126	138
127	146
128	119
129	127
130	137
131	133
132	110
133	116
134	128
135	125
136	127
137	95
138	104
139	110
140	98
141	109
142	94
143	94
144	99
145	95
146	99
147	88
148	75
149	87
150	91
151	81
152	100
153	92
154	92
155	74
156	91
157	75
158	82
159	78
160	85
161	60
162	82
163	73
164	68
165	65
166	83
167	69
168	74
169	62
170	58
171	55
172	45
173	61
174	52
175	47
176	53
177	68
178	52
179	61
180	67
181	54
182	52
183	63
184	50
185	44
186	44
187	53
188	46
189	53
190	41
191	36
192	44
193	45
194	49
195	48
196	37
197	46
198	52
199	31
200	37
201	46
202	40
203	39
204	48
205	42
206	29
207	40
208	32
209	37
210	37
211	35
212	25
213	26
214	22
215	33
216	42
217	34
218	28
219	29
220	33
221	34
222	32
223	23
224	24
225	23
226	22
227	30
228	18
229	34
230	35
231	30
232	19
233	25
234	28
235	27
236	31
237	32
238	29
239	21
240	20
241	29
242	28
243	18
244	30
245	21
246	33
247	27
248	21
249	25
250	21
251	21
252	19
253	23
254	26
255	18
256	18
257	18
258	19
259	20
260	22
261	19
262	19
263	24
264	27
265	16
266	19
267	16
268	21
269	16
270	18
271	13
272	20
273	17
274	18
275	12
276	20
277	23
278	21
279	18
280	15
281	9
282	17
283	15
284	20
285	14
286	17
287	14
288	13
289	24
290	15
291	23
292	11
293	11
294	13
295	15
296	16
297	13
298	13
299	16
300	12
301	12
302	9
303	16
304	7
305	10
306	13
307	8
308	13
309	13
310	11
311	8
312	8
313	19
314	7
315	7
316	13
317	9
318	15
319	5
320	11
321	14
322	20
323	7
324	14
325	8
326	17
327	7
328	12
329	9
330	2
331	8
332	6
333	12
334	10
335	16
336	9
337	11
338	11
339	9
340	12
341	7
342	9
343	5
344	6
345	8
346	11
347	9
348	13
349	9
350	4
351	10
352	4
353	6
354	9
355	8
356	14
357	8
358	11
359	6
360	9
361	8
362	8
363	10
364	5
365	7
366	6
367	8
368	6
369	7
370	5
371	8
372	10
373	11
374	9
375	7
376	6
377	11
378	10
379	6
380	9
381	4
382	3
383	7
384	6
385	6
386	10
387	10
388	5
389	7
390	2
391	7
392	5
393	5
394	7
395	9
396	6
397	8
398	6
399	4
400	4
401	5
402	5
403	4
404	6
405	5
406	5
407	4
408	7
409	2
410	8
411	5
412	3
413	9
414	8
415	11
416	9
417	5
418	4
419	13
420	6
421	5
422	2
423	7
424	8
425	5
426	4
427	3
428	4
429	5
430	2
431	8
432	3
434	8
435	4
436	4
437	5
438	3
439	8
440	3
442	8
443	2
444	7
445	3
446	5
447	4
448	4
449	6
450	1
451	4
452	2
453	2
454	4
455	4
456	2
457	5
458	5
459	4
460	3
461	14
462	5
463	5
464	6
465	6
466	6
467	4
468	4
469	7
470	4
471	1
472	5
473	2
474	2
475	4
476	1
477	2
478	4
479	6
480	2
481	4
482	2
483	4
484	3
485	5
486	2
487	4
488	1
489	6
490	2
491	1
492	7
493	3
494	3
495	1
496	3
497	1
498	3
499	9
500	4
501	3
502	6
503	3
504	6
505	3
506	4
507	2
508	4
510	2
511	4
512	4
514	2
515	3
516	2
517	2
518	2
519	2
520	5
521	2
522	3
524	7
525	1
526	2
527	6
528	3
529	3
530	4
531	3
532	7
533	1
534	4
535	5
536	3
537	2
538	5
539	1
540	1
541	1
542	3
543	3
544	4
545	3
546	4
547	1
548	2
549	3
550	2
551	3
552	5
553	5
555	2
556	2
557	2
560	2
561	3
562	4
563	2
564	1
565	2
566	2
567	4
568	3
569	6
570	5
572	3
573	3
574	3
576	1
577	1
578	3
579	3
580	1
582	1
583	1
584	3
585	1
586	2
587	3
588	4
589	2
590	3
591	3
592	3
593	1
594	1
595	3
596	7
597	3
598	2
600	1
601	5
602	2
603	1
604	3
605	1
606	1
607	3
609	1
610	3
611	1
612	1
613	3
614	3
616	2
618	2
619	2
621	3
622	3
623	1
624	1
625	1
626	2
627	1
628	3
630	1
631	1
634	2
637	5
639	3
640	2
643	2
644	1
645	2
646	1
648	1
649	4
652	1
653	2
654	2
655	2
656	1
657	2
658	1
659	2
660	3
661	1
662	1
663	4
664	1
665	2
666	1
667	1
668	1
669	1
671	5
673	6
674	2
675	1
676	1
678	2
679	2
680	1
681	3
682	1
683	1
684	2
685	2
686	3
687	1
688	2
689	1
690	1
691	3
692	3
693	2
694	1
695	2
696	2
699	2
701	1
702	1
704	3
705	1
706	2
709	1
710	2
711	2
712	2
713	2
715	2
717	1
718	1
719	2
720	1
721	1
723	3
725	1
727	2
728	2
729	3
731	3
732	1
733	1
734	1
735	1
736	3
737	1
738	2
739	1
740	2
741	2
742	2
743	1
744	1
745	2
747	1
748	3
751	1
753	1
755	1
756	2
757	2
758	1
760	1
761	3
763	2
764	1
765	2
767	1
769	1
771	2
773	3
776	3
777	3
778	1
784	1
785	1
787	3
788	1
789	1
791	2
792	1
794	1
796	2
801	1
802	1
803	2
804	1
805	1
808	1
809	1
810	1
811	1
813	1
814	2
815	1
817	1
819	3
820	1
822	1
823	1
824	1
827	1
831	1
834	1
836	1
838	1
839	2
840	2
841	1
844	1
847	1
848	2
849	1
850	2
851	3
852	1
854	1
856	1
859	1
865	1
866	3
867	3
871	2
874	2
875	2
876	1
877	1
878	1
883	1
886	1
888	1
889	2
891	3
893	1
895	1
897	1
898	1
899	1
904	1
910	2
914	2
915	1
916	3
917	1
924	1
927	1
928	2
933	1
935	1
939	2
942	1
943	2
947	1
948	1
951	1
953	1
954	2
955	1
959	1
961	1
962	1
964	1
966	1
968	2
970	1
971	2
979	1
986	2
989	1
990	2
994	1
1005	1
1011	1
1013	1
1018	1
1019	1
1023	1
1027	1
1032	1
1037	1
1045	1
1046	1
1052	1
1053	1
1056	1
1058	1
1063	1
1078	1
1080	4
1086	1
1087	1
1090	1
1094	1
1102	1
1112	1
1113	1
1119	1
1132	1
1136	1
1139	1
1155	2
1157	1
1167	1
1168	1
1176	1
1187	1
1188	1
1189	1
1197	1
1198	1
1199	1
1202	1
1203	1
1220	1
1221	2
1228	1
1229	1
1232	1
1242	1
1244	1
1252	2
1256	1
1263	1
1273	1
1281	1
1284	1
1303	1
1311	1
1312	1
1315	1
1322	1
1331	1
1337	1
1346	1
1348	1
1355	1
1365	1
1368	1
1380	1
1384	1
1389	1
1394	1
1400	1
1405	2
1436	1
1448	1
1450	1
1486	1
1487	1
1503	1
1508	1
1532	2
1538	1
1545	1
1553	1
1570	1
1585	1
1590	1
1632	1
1641	1
1683	1
1703	1
1729	1
1734	1
1770	1
1777	1
1829	1
1862	1
1905	1
1911	1
1962	1
2061	1
2062	1
2078	1
2100	1
2164	1
2176	1
2210	1
2379	1
2383	1
2385	1
2472	1
2522	1
2546	1
2613	1
2673	1
2678	1
2982	1
3379	1
3569	1
3965	1
4341	1
4843	1
4854	1
4964	1
6336	1
7597	1
17638	1
435423	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
...._......_..............._........._......_...........................
.................................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]