Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/465b1127a57e0c5a7890d88dbc1e6a/aih-tih-sc-13a2f6-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/013786bf60e48795a82bf865049234/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/c41fe9af367205a997e7948bae52ca/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/c41fe9af367205a997e7948bae52ca/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/28ab5e6267b7dc6a6f85aaca6d24cb/aih-tih-sc-13a2f6-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-13a2f6-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (4962806) splicing reads. 184308 splicing junctions. 157473 known splicing junctions. 26835 novel splicing junctions.
sampling 10% (9925612) splicing reads. 209449 splicing junctions. 168558 known splicing junctions. 40891 novel splicing junctions.
sampling 15% (14888418) splicing reads. 224487 splicing junctions. 173999 known splicing junctions. 50488 novel splicing junctions.
sampling 20% (19851224) splicing reads. 234688 splicing junctions. 177229 known splicing junctions. 57459 novel splicing junctions.
sampling 25% (24814030) splicing reads. 241931 splicing junctions. 179420 known splicing junctions. 62511 novel splicing junctions.
sampling 30% (29776836) splicing reads. 247559 splicing junctions. 181023 known splicing junctions. 66536 novel splicing junctions.
sampling 35% (34739643) splicing reads. 252033 splicing junctions. 182214 known splicing junctions. 69819 novel splicing junctions.
sampling 40% (39702449) splicing reads. 255599 splicing junctions. 183202 known splicing junctions. 72397 novel splicing junctions.
sampling 45% (44665255) splicing reads. 258497 splicing junctions. 183900 known splicing junctions. 74597 novel splicing junctions.
sampling 50% (49628061) splicing reads. 260927 splicing junctions. 184503 known splicing junctions. 76424 novel splicing junctions.
sampling 55% (54590867) splicing reads. 262933 splicing junctions. 184988 known splicing junctions. 77945 novel splicing junctions.
sampling 60% (59553673) splicing reads. 264636 splicing junctions. 185372 known splicing junctions. 79264 novel splicing junctions.
sampling 65% (64516479) splicing reads. 266023 splicing junctions. 185692 known splicing junctions. 80331 novel splicing junctions.
sampling 70% (69479286) splicing reads. 267135 splicing junctions. 185967 known splicing junctions. 81168 novel splicing junctions.
sampling 75% (74442092) splicing reads. 268096 splicing junctions. 186193 known splicing junctions. 81903 novel splicing junctions.
sampling 80% (79404898) splicing reads. 268894 splicing junctions. 186371 known splicing junctions. 82523 novel splicing junctions.
sampling 85% (84367704) splicing reads. 269491 splicing junctions. 186498 known splicing junctions. 82993 novel splicing junctions.
sampling 90% (89330510) splicing reads. 269930 splicing junctions. 186604 known splicing junctions. 83326 novel splicing junctions.
sampling 95% (94293316) splicing reads. 270258 splicing junctions. 186676 known splicing junctions. 83582 novel splicing junctions.
sampling 100% (99256123) splicing reads. 270418 splicing junctions. 186710 known splicing junctions. 83708 novel splicing junctions.
null device 
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