Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/9c0893915f9534afa6b94f130ee31e/aih-tih-sc-20b7e4-R1_B23WHYVLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-8900cb43-4dca-49ac-a290-1d176a2e0012/bb/b9dd0d6df869a3d0edd9f161adc899/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/00f1f9abf371f5d31efe64f9c62f7f/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/00f1f9abf371f5d31efe64f9c62f7f/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/206133b1bb0152a86581b62a0f79cb/aih-tih-sc-20b7e4-R1_B23WHYVLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
0%| | 0/16 [00:00<?, ?it/s]ELL--AC003973.1
starfusion
arriba
UPF1--PGAP3
starfusion
arriba
GATAD2A--ATP13A1
starfusion
arriba
ERBB2--BORCS8
starfusion
FBXL20--AC004231.1
starfusion
arriba
ZNF14--NF1
starfusion
arriba
STX16--NPEPL1
starfusion
arriba
RNF19A--CAMK2A
starfusion
arriba
ERBB2--MEF2B
starfusion
ZNF208--IKZF3
arriba
ELL--ZNF257
arriba
PIK3R2--ATP13A1
arriba
PIK3R2--ZNF101
arriba
SSH2--KXD1
arriba
TAOK1--SLC13A2
arriba
ZNF14--ZNF257
arriba
Processing ELL--AC003973.1: 0%| | 0/16 [00:00<?, ?it/s]
Processing ELL--AC003973.1: 6%|▋ | 1/16 [00:00<00:01, 9.16it/s]
Processing UPF1--PGAP3: 6%|▋ | 1/16 [00:00<00:01, 9.16it/s]
Processing UPF1--PGAP3: 12%|█▎ | 2/16 [00:00<00:01, 9.38it/s]
Processing GATAD2A--ATP13A1: 12%|█▎ | 2/16 [00:00<00:01, 9.38it/s]
Processing GATAD2A--ATP13A1: 19%|█▉ | 3/16 [00:00<00:01, 9.45it/s]
Processing ERBB2--BORCS8: 19%|█▉ | 3/16 [00:00<00:01, 9.45it/s]
Processing ERBB2--BORCS8: 25%|██▌ | 4/16 [00:00<00:01, 9.49it/s]
Processing FBXL20--AC004231.1: 25%|██▌ | 4/16 [00:00<00:01, 9.49it/s]
Processing FBXL20--AC004231.1: 31%|███▏ | 5/16 [00:00<00:01, 9.50it/s]
Processing ZNF14--NF1: 31%|███▏ | 5/16 [00:00<00:01, 9.50it/s]
Processing ZNF14--NF1: 38%|███▊ | 6/16 [00:00<00:01, 9.52it/s]
Processing STX16--NPEPL1: 38%|███▊ | 6/16 [00:00<00:01, 9.52it/s]
Processing STX16--NPEPL1: 44%|████▍ | 7/16 [00:00<00:00, 9.48it/s]
Processing RNF19A--CAMK2A: 44%|████▍ | 7/16 [00:00<00:00, 9.48it/s]
Processing RNF19A--CAMK2A: 50%|█████ | 8/16 [00:00<00:00, 9.45it/s]
Processing ERBB2--MEF2B: 50%|█████ | 8/16 [00:00<00:00, 9.45it/s]
Processing ERBB2--MEF2B: 56%|█████▋ | 9/16 [00:00<00:00, 9.44it/s]
Processing ZNF208--IKZF3: 56%|█████▋ | 9/16 [00:00<00:00, 9.44it/s]
Processing ZNF208--IKZF3: 62%|██████▎ | 10/16 [00:01<00:00, 9.46it/s]
Processing ELL--ZNF257: 62%|██████▎ | 10/16 [00:01<00:00, 9.46it/s]
Processing ELL--ZNF257: 69%|██████▉ | 11/16 [00:01<00:00, 9.49it/s]
Processing PIK3R2--ATP13A1: 69%|██████▉ | 11/16 [00:01<00:00, 9.49it/s]
Processing PIK3R2--ATP13A1: 75%|███████▌ | 12/16 [00:01<00:00, 9.50it/s]
Processing PIK3R2--ZNF101: 75%|███████▌ | 12/16 [00:01<00:00, 9.50it/s]
Processing PIK3R2--ZNF101: 81%|████████▏ | 13/16 [00:01<00:00, 9.51it/s]
Processing SSH2--KXD1: 81%|████████▏ | 13/16 [00:01<00:00, 9.51it/s]
Processing SSH2--KXD1: 88%|████████▊ | 14/16 [00:01<00:00, 9.52it/s]
Processing TAOK1--SLC13A2: 88%|████████▊ | 14/16 [00:01<00:00, 9.52it/s]
Processing TAOK1--SLC13A2: 94%|█████████▍| 15/16 [00:01<00:00, 9.53it/s]
Processing ZNF14--ZNF257: 94%|█████████▍| 15/16 [00:01<00:00, 9.53it/s]
Processing ZNF14--ZNF257: 100%|██████████| 16/16 [00:01<00:00, 9.53it/s]
Processing ZNF14--ZNF257: 100%|██████████| 16/16 [00:01<00:00, 9.49it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory