File Info
- Filename
- aih-tih-sc-20b7e4-R1_B23WHYVLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/00f1f9abf371f5d31efe64f9c62f7f/aih-tih-sc-20b7e4-R1_B23WHYVLT4_1.fusions.csv
- Size
- 4.3 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-20b7e4-R1_B23WHYVLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| ELL--AC003973.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr19:18521921#chr19:22043188,reading-frame: out-of-frame,type: duplication,split_reads1: 49,split_reads2: 96,discordant_mates: 0,coverage1: 8981,coverage2: 331,confidence: high | position: chr19:18521921:-#chr19:22043188:-,junction_reads: 170,spanning_reads: 0,ffmp: 1.5305 | |
| UPF1--PGAP3 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr19:18856300#chr17:39674679,reading-frame: in-frame,type: translocation,split_reads1: 52,split_reads2: 88,discordant_mates: 0,coverage1: 2941,coverage2: 4398,confidence: high | position: chr19:18856300:+#chr17:39674679:-,junction_reads: 145,spanning_reads: 0,ffmp: 1.3054 | |
| GATAD2A--ATP13A1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr19:19492712#chr19:19659987,reading-frame: in-frame,type: inversion,split_reads1: 71,split_reads2: 36,discordant_mates: 0,coverage1: 2772,coverage2: 1815,confidence: high | position: chr19:19492712:+#chr19:19659987:-,junction_reads: 113,spanning_reads: 0,ffmp: 1.0173 | |
| ERBB2--BORCS8 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:39700311:+#chr19:19182683:-,junction_reads: 22,spanning_reads: 0,ffmp: 0.1981 | ||
| FBXL20--AC004231.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:39401361#chr17:40928259,reading-frame: out-of-frame,type: inversion,split_reads1: 5,split_reads2: 14,discordant_mates: 1,coverage1: 351,coverage2: 237,confidence: high | position: chr17:39401361:-#chr17:40928259:+,junction_reads: 19,spanning_reads: 1,ffmp: 0.1801 | |
| ZNF14--NF1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr19:19732956#chr17:31325820,reading-frame: out-of-frame,type: translocation,split_reads1: 4,split_reads2: 5,discordant_mates: 0,coverage1: 164,coverage2: 624,confidence: high | position: chr19:19732956:-#chr17:31325820:+,junction_reads: 9,spanning_reads: 0,ffmp: 0.081 | |
| STX16--NPEPL1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 16,split_reads2: 8,discordant_mates: 0,coverage1: 1241,coverage2: 290,confidence: high | position: chr20:58673711:+#chr20:58691724:+,junction_reads: 8,spanning_reads: 0,ffmp: 0.072 | |
| RNF19A--CAMK2A | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr8:100309867#chr5:150273159,reading-frame: .,type: translocation,split_reads1: 2,split_reads2: 6,discordant_mates: 0,coverage1: 37,coverage2: 537,confidence: high | position: chr8:100309867:-#chr5:150273159:-,junction_reads: 8,spanning_reads: 0,ffmp: 0.072 | |
| ERBB2--MEF2B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:39700311:+#chr19:19150764:-,junction_reads: 8,spanning_reads: 0,ffmp: 0.072 | ||
| ZNF208--IKZF3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr19:22010792#chr17:39792933,reading-frame: out-of-frame,type: translocation,split_reads1: 295,split_reads2: 128,discordant_mates: 0,coverage1: 4568,coverage2: 3240,confidence: high | ||
| ELL--ZNF257 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr19:18521921#chr19:22052576,reading-frame: out-of-frame,type: duplication/5'-5',split_reads1: 229,split_reads2: 86,discordant_mates: 0,coverage1: 8981,coverage2: 1521,confidence: high | ||
| PIK3R2--ATP13A1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr19:18162506#chr19:19667558,reading-frame: out-of-frame,type: deletion,split_reads1: 6,split_reads2: 18,discordant_mates: 0,coverage1: 1504,coverage2: 50,confidence: high | ||
| PIK3R2--ZNF101 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr19:18162506#chr19:19667558,reading-frame: out-of-frame,type: deletion,split_reads1: 6,split_reads2: 18,discordant_mates: 0,coverage1: 1504,coverage2: 50,confidence: high | ||
| SSH2--KXD1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:29929938#chr19:18562036,reading-frame: in-frame,type: translocation,split_reads1: 10,split_reads2: 4,discordant_mates: 0,coverage1: 5319,coverage2: 841,confidence: high | ||
| TAOK1--SLC13A2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:29391024#chr17:28491846,reading-frame: .,type: inversion/3'-3',split_reads1: 5,split_reads2: 7,discordant_mates: 0,coverage1: 41,coverage2: 417,confidence: high | ||
| ZNF14--ZNF257 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr19:19732956#chr19:22064189,reading-frame: out-of-frame,type: duplication/5'-5',split_reads1: 3,split_reads2: 7,discordant_mates: 0,coverage1: 164,coverage2: 18,confidence: high |
17 rows