Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/314c3122f26d08f548fd108977fa83/aih-tih-sc-7fc50e-R1_B23WHYVLT4_1_1.fastp.fastq.gz Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/7555ee2aed7b42bc5897245dc9fd49/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/314c3122f26d08f548fd108977fa83/aih-tih-sc-7fc50e-R1_B23WHYVLT4_1_2.fastp.fastq.gz Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/7555ee2aed7b42bc5897245dc9fd49/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/a4547dc5365e8b9ff227d6effa6a10/aih-tih-sc-7fc50e-R1_B23WHYVLT4_1.Chimeric.out.junction ==> STAGING COMPLETE (6 inputs) -ctat genome lib [/tmp/nxf.G2HLOFS1VD/ctat_genome_lib_build_dir] validates. CMD: mkdir -p /tmp/nxf.G2HLOFS1VD/./_starF_checkpoints CMD: mkdir -p /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary -sample contains 180961779 rnaseq fragments * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.G2HLOFS1VD/ctat_genome_lib_build_dir -J /tmp/nxf.G2HLOFS1VD/aih-tih-sc-7fc50e-R1_B23WHYVLT4_1.Chimeric.out.junction -O /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 -parsing fusion evidence: /tmp/nxf.G2HLOFS1VD/aih-tih-sc-7fc50e-R1_B23WHYVLT4_1.Chimeric.out.junction -building interval tree based on /tmp/nxf.G2HLOFS1VD/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.08 min). -mapping reads to genes [10000], rate=31578.95/min [20000], rate=31578.95/min [30000], rate=32142.86/min [40000], rate=31578.95/min [50000], rate=29411.76/min [60000], rate=29032.26/min [70000], rate=28965.52/min [80000], rate=28402.37/min [90000], rate=27835.05/min [100000], rate=26666.67/min [110000], rate=25882.35/min [120000], rate=26086.96/min [130000], rate=26621.16/min [140000], rate=26837.06/min [150000], rate=27190.33/min [160000], rate=27428.57/min [170000], rate=27792.92/min [180000], rate=27763.50/min [190000], rate=28148.15/min [200000], rate=28368.79/min [210000], rate=28832.95/min [220000], rate=29333.33/min [230000], rate=29424.31/min [240000], rate=29813.66/min [250000], rate=29702.97/min [260000], rate=28782.29/min [270000], rate=28173.91/min [280000], rate=28046.74/min [290000], rate=27840.00/min [300000], rate=27355.62/min [310000], rate=26345.61/min [320000], rate=25841.18/min [330000], rate=25190.84/min [340000], rate=24727.27/min [350000], rate=24361.95/min [360000], rate=24351.75/min [370000], rate=24368.83/min [380000], rate=24203.82/min [390000], rate=24248.70/min [400000], rate=24365.48/min [410000], rate=24501.99/min [420000], rate=24754.42/min [430000], rate=24927.54/min [440000], rate=25047.44/min [450000], rate=25000.00/min [460000], rate=25159.53/min [470000], rate=25336.93/min [480000], rate=25329.82/min [490000], rate=25520.83/min [500000], rate=25619.13/min [510000], rate=25585.28/min [520000], rate=25742.57/min [530000], rate=25980.39/min [540000], rate=25940.75/min [550000], rate=25984.25/min [560000], rate=26066.72/min [570000], rate=26047.22/min [580000], rate=26244.34/min [590000], rate=26339.29/min [600000], rate=26392.96/min [610000], rate=26483.36/min [620000], rate=26495.73/min [630000], rate=26526.32/min [640000], rate=26501.04/min [650000], rate=26494.57/min [660000], rate=26595.03/min [670000], rate=26604.90/min [680000], rate=26666.67/min [690000], rate=26589.60/min [700000], rate=26615.97/min [710000], rate=26575.17/min [720000], rate=26535.63/min [730000], rate=26481.26/min [740000], rate=26618.71/min [750000], rate=26833.63/min [760000], rate=27046.26/min [770000], rate=27240.57/min [780000], rate=27448.68/min [790000], rate=27510.16/min [800000], rate=27522.94/min [810000], rate=27535.41/min [820000], rate=27547.59/min [830000], rate=27651.30/min [840000], rate=27768.60/min [850000], rate=28037.38/min [860000], rate=28119.89/min [870000], rate=28292.68/min [880000], rate=28463.61/min [890000], rate=28617.36/min [900000], rate=28723.40/min [910000], rate=28827.88/min [920000], rate=28764.98/min [930000], rate=28881.99/min [940000], rate=28937.92/min [950000], rate=29037.19/min [960000], rate=29312.98/min [970000], rate=29513.18/min [980000], rate=29711.98/min [990000], rate=29939.52/min [1000000], rate=30105.37/min [1010000], rate=30330.33/min [1020000], rate=30523.69/min [1030000], rate=30639.56/min [1040000], rate=30723.78/min [1050000], rate=30716.72/min [1060000], rate=30888.78/min [1070000], rate=30924.86/min [1080000], rate=31079.14/min [1090000], rate=31202.29/min [1100000], rate=31324.16/min [1110000], rate=31489.36/min [1120000], rate=31638.42/min [1130000], rate=31786.22/min [1140000], rate=31947.69/min [1150000], rate=31944.44/min [1160000], rate=31882.73/min [1170000], rate=31909.09/min [1180000], rate=32065.22/min [1190000], rate=31917.75/min [1200000], rate=31900.75/min [1210000], rate=31786.34/min [1220000], rate=31660.90/min [1230000], rate=31728.29/min [1240000], rate=31619.21/min [1250000], rate=31592.25/min [1260000], rate=31711.41/min [1270000], rate=31829.57/min [1280000], rate=31946.76/min [1290000], rate=32076.25/min [1300000], rate=32138.44/min [1310000], rate=31886.41/min [1320000], rate=31654.68/min [1330000], rate=31429.70/min [1340000], rate=31259.72/min [1350000], rate=31105.99/min [1360000], rate=31121.28/min [1370000], rate=30913.88/min [1380000], rate=30792.12/min [1390000], rate=30549.45/min [1400000], rate=30412.74/min [1410000], rate=30290.01/min [1420000], rate=30212.77/min [1430000], rate=30158.17/min [1440000], rate=30125.52/min [1450000], rate=30166.44/min [1460000], rate=30134.16/min [1470000], rate=30112.67/min [1480000], rate=30111.90/min [1490000], rate=30080.75/min [1500000], rate=30060.12/min [1510000], rate=30079.68/min [1520000], rate=30099.01/min [1530000], rate=30127.99/min [1540000], rate=30176.36/min [1550000], rate=30253.74/min [1560000], rate=30330.52/min [1570000], rate=30426.36/min [1580000], rate=30551.08/min [1590000], rate=30606.35/min [1600000], rate=30505.24/min [1610000], rate=30434.78/min [1620000], rate=30384.50/min [1630000], rate=30363.24/min [1640000], rate=30342.28/min [1650000], rate=30340.18/min [1660000], rate=30356.60/min [1670000], rate=30354.44/min [1680000], rate=30361.45/min -building interval tree based on /tmp/nxf.G2HLOFS1VD/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.08 min). -mapping reads to genes [10000], rate=50000.00/min [20000], rate=63157.89/min [30000], rate=58064.52/min [40000], rate=58536.59/min [50000], rate=56603.77/min [60000], rate=58064.52/min [70000], rate=58333.33/min [80000], rate=57142.86/min [90000], rate=58064.52/min [100000], rate=60000.00/min [110000], rate=62264.15/min [120000], rate=61538.46/min [130000], rate=57777.78/min [140000], rate=55629.14/min [150000], rate=54216.87/min [160000], rate=53631.28/min [170000], rate=53684.21/min [180000], rate=53465.35/min [190000], rate=53521.13/min [200000], rate=51948.05/min [210000], rate=49027.24/min [220000], rate=46478.87/min [230000], rate=44089.46/min [240000], rate=43243.24/min [250000], rate=42253.52/min [260000], rate=40519.48/min [270000], rate=39225.18/min [280000], rate=38532.11/min [290000], rate=38157.89/min [300000], rate=37815.13/min [310000], rate=37349.40/min [320000], rate=36781.61/min [330000], rate=36330.28/min [340000], rate=36042.40/min [350000], rate=35897.44/min [360000], rate=36120.40/min [370000], rate=36513.16/min [380000], rate=37012.99/min [390000], rate=37741.94/min [400000], rate=38400.00/min [410000], rate=38924.05/min [420000], rate=38709.68/min [430000], rate=37829.91/min [440000], rate=37500.00/min [450000], rate=36834.92/min [460000], rate=36220.47/min [470000], rate=35877.86/min [480000], rate=35687.73/min [490000], rate=35041.72/min [500000], rate=35005.83/min [510000], rate=34615.38/min [520000], rate=34248.08/min [530000], rate=34156.82/min [540000], rate=34394.90/min [550000], rate=34591.19/min [560000], rate=34746.64/min [570000], rate=34685.60/min [580000], rate=34661.35/min [590000], rate=34671.89/min [600000], rate=33676.33/min [610000], rate=32854.58/min [620000], rate=32263.66/min [630000], rate=31952.66/min [640000], rate=31709.33/min [650000], rate=31400.97/min [660000], rate=31083.20/min [670000], rate=31066.46/min [680000], rate=30607.65/min [690000], rate=30441.18/min [700000], rate=30567.69/min [710000], rate=30603.45/min [720000], rate=30638.30/min [730000], rate=30758.43/min [740000], rate=30854.76/min [750000], rate=30779.75/min [760000], rate=30790.01/min [770000], rate=30820.55/min [780000], rate=30891.09/min [790000], rate=30899.61/min [800000], rate=30828.52/min [810000], rate=30740.04/min [820000], rate=30673.32/min [830000], rate=30384.38/min [840000], rate=30563.98/min [850000], rate=30667.47/min [860000], rate=30442.48/min [870000], rate=30296.00/min [880000], rate=30223.24/min [890000], rate=30135.44/min [900000], rate=30117.12/min [910000], rate=30016.49/min [920000], rate=30114.57/min [930000], rate=30000.00/min [940000], rate=29857.07/min [950000], rate=29780.56/min [960000], rate=29922.08/min [970000], rate=29907.50/min [980000], rate=29878.05/min [990000], rate=29789.37/min [1000000], rate=29761.90/min [1010000], rate=29633.25/min [1020000], rate=29665.54/min [1030000], rate=29797.49/min [1040000], rate=29870.75/min [1050000], rate=30014.29/min [1060000], rate=30199.43/min [1070000], rate=30340.26/min [1080000], rate=30223.88/min [1090000], rate=30013.77/min [1100000], rate=29810.30/min [1110000], rate=29679.14/min [1120000], rate=29629.63/min [1130000], rate=29516.76/min [1140000], rate=29293.36/min [1150000], rate=29224.90/min [1160000], rate=29145.73/min [1170000], rate=28924.60/min [1180000], rate=28803.91/min [1190000], rate=28732.39/min [1200000], rate=28696.69/min [1210000], rate=28616.48/min [1220000], rate=28526.89/min [1230000], rate=28472.22/min [1240000], rate=28407.79/min [1250000], rate=28387.59/min [1260000], rate=28367.73/min [1270000], rate=28327.14/min [1280000], rate=28214.55/min [1290000], rate=28165.94/min [1300000], rate=28179.19/min [1310000], rate=28212.49/min [1320000], rate=28255.44/min [1330000], rate=28257.79/min [1340000], rate=28260.11/min [1350000], rate=28223.00/min [1360000], rate=28225.53/min [1370000], rate=28208.65/min [1380000], rate=28182.44/min [1390000], rate=28175.68/min [1400000], rate=28216.33/min [1410000], rate=28228.23/min [1420000], rate=28202.58/min [1430000], rate=28140.37/min [1440000], rate=28106.70/min [1450000], rate=28146.23/min [1460000], rate=28176.26/min [1470000], rate=28251.12/min [1480000], rate=28343.44/min [1490000], rate=28435.11/min [1500000], rate=28526.15/min [1510000], rate=28634.64/min [1520000], rate=28679.25/min [1530000], rate=28741.39/min [1540000], rate=28785.05/min [1550000], rate=28873.02/min [1560000], rate=28960.40/min [1570000], rate=29038.22/min [1580000], rate=29133.37/min [1590000], rate=29245.86/min [1600000], rate=29312.98/min [1610000], rate=29105.15/min [1620000], rate=28954.42/min [1630000], rate=28815.56/min [1640000], rate=28729.93/min [1650000], rate=28612.72/min [1660000], rate=28538.68/min [1670000], rate=28465.91/min -building interval tree based on /tmp/nxf.G2HLOFS1VD/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.07 min). -mapping reads to genes [10000], rate=54545.45/min [20000], rate=54545.45/min [30000], rate=54545.45/min [40000], rate=55813.95/min [50000], rate=57692.31/min [60000], rate=59016.39/min [70000], rate=60869.57/min [80000], rate=61538.46/min [90000], rate=59340.66/min [100000], rate=51724.14/min [110000], rate=44295.30/min [120000], rate=40449.44/min [130000], rate=37142.86/min [140000], rate=34567.90/min [150000], rate=32142.86/min [160000], rate=31168.83/min [170000], rate=30088.50/min [180000], rate=28723.40/min [190000], rate=27737.23/min [200000], rate=26966.29/min [210000], rate=26923.08/min [220000], rate=26452.91/min [230000], rate=26086.96/min [240000], rate=25622.78/min [250000], rate=25337.84/min [260000], rate=25120.77/min [270000], rate=24884.79/min [280000], rate=24705.88/min [290000], rate=24611.03/min [300000], rate=24725.27/min [310000], rate=24505.93/min [320000], rate=24365.48/min [330000], rate=24414.30/min [340000], rate=24548.74/min [350000], rate=24676.85/min [360000], rate=24713.96/min [370000], rate=24776.79/min [380000], rate=25221.24/min [390000], rate=25490.20/min [400000], rate=25369.98/min [410000], rate=25308.64/min [420000], rate=25225.23/min [430000], rate=25195.31/min [440000], rate=25142.86/min [450000], rate=25046.38/min [460000], rate=24954.79/min [470000], rate=24802.11/min [480000], rate=24849.01/min [490000], rate=24438.90/min [500000], rate=23961.66/min [510000], rate=23502.30/min [520000], rate=23111.11/min [530000], rate=22894.17/min [540000], rate=22625.70/min [550000], rate=22403.26/min [560000], rate=22266.40/min [570000], rate=22164.61/min [580000], rate=22193.88/min [590000], rate=22334.38/min [600000], rate=22346.37/min [610000], rate=22495.39/min [620000], rate=22696.77/min [630000], rate=22812.31/min [640000], rate=23007.79/min [650000], rate=23214.29/min [660000], rate=23225.81/min [670000], rate=23236.99/min [680000], rate=23314.29/min [690000], rate=23337.09/min [700000], rate=23346.30/min [710000], rate=23380.90/min [720000], rate=23516.60/min [730000], rate=23752.71/min [740000], rate=23845.33/min [750000], rate=23684.21/min [760000], rate=23565.89/min [770000], rate=23499.49/min [780000], rate=23306.77/min [790000], rate=23326.77/min [800000], rate=23391.81/min [810000], rate=23432.98/min [820000], rate=23384.03/min [830000], rate=23479.49/min [840000], rate=23507.46/min [850000], rate=23513.14/min [860000], rate=23401.36/min [870000], rate=23429.08/min [880000], rate=23342.18/min [890000], rate=23278.12/min [900000], rate=23175.97/min [910000], rate=23057.43/min [920000], rate=23009.59/min [930000], rate=23076.92/min [940000], rate=23133.72/min [950000], rate=23114.36/min [960000], rate=23104.69/min [970000], rate=23113.58/min [980000], rate=23250.30/min [990000], rate=23257.64/min [1000000], rate=23273.86/min [1010000], rate=23361.60/min [1020000], rate=23367.70/min [1030000], rate=23417.96/min [1040000], rate=23511.68/min [1050000], rate=23533.81/min [1060000], rate=23538.12/min [1070000], rate=23568.28/min [1080000], rate=23597.96/min [1090000], rate=23618.63/min [1100000], rate=23655.91/min [1110000], rate=23701.07/min [1120000], rate=23762.38/min [1130000], rate=23831.28/min [1140000], rate=23916.08/min [1150000], rate=23974.98/min [1160000], rate=24024.85/min [1170000], rate=24090.60/min [1180000], rate=24180.33/min [1190000], rate=24269.20/min [1200000], rate=24283.31/min [1210000], rate=24321.61/min [1220000], rate=24424.42/min [1230000], rate=24559.07/min [1240000], rate=24717.61/min [1250000], rate=24867.37/min [1260000], rate=25024.83/min [1270000], rate=25181.76/min [1280000], rate=25321.46/min [1290000], rate=25452.15/min [1300000], rate=25573.77/min [1310000], rate=25661.12/min [1320000], rate=25672.61/min [1330000], rate=25692.21/min [1340000], rate=25703.32/min [1350000], rate=25706.13/min [1360000], rate=25708.88/min [1370000], rate=25768.03/min [1380000], rate=25810.47/min [1390000], rate=25844.44/min [1400000], rate=25893.96/min [1410000], rate=25935.01/min [1420000], rate=25991.46/min [1430000], rate=26055.27/min [1440000], rate=26118.50/min [1450000], rate=26181.16/min [1460000], rate=26266.87/min [1470000], rate=26375.60/min [1480000], rate=26475.85/min [1490000], rate=26591.31/min [1500000], rate=26698.31/min [1510000], rate=26820.60/min [1520000], rate=26863.03/min [1530000], rate=26897.16/min [1540000], rate=26930.92/min [1550000], rate=26972.16/min [1560000], rate=26989.62/min [1570000], rate=27022.38/min [1580000], rate=27054.79/min [1590000], rate=27102.27/min [1600000], rate=27164.69/min [1610000], rate=27234.28/min [1620000], rate=27326.40/min [1630000], rate=27418.00/min [1640000], rate=27516.78/min [1650000], rate=27630.48/min [1660000], rate=27743.73/min [1670000], rate=27856.55/min -building interval tree based on /tmp/nxf.G2HLOFS1VD/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.07 min). -mapping reads to genes [10000], rate=100000.00/min [20000], rate=109090.91/min [30000], rate=112500.00/min [40000], rate=120000.00/min [50000], rate=120000.00/min [60000], rate=128571.43/min [70000], rate=131250.00/min [80000], rate=133333.33/min [90000], rate=131707.32/min [100000], rate=127659.57/min [110000], rate=129411.76/min [120000], rate=128571.43/min [130000], rate=130000.00/min [140000], rate=129230.77/min [150000], rate=132352.94/min [160000], rate=135211.27/min [170000], rate=136000.00/min [180000], rate=130120.48/min [190000], rate=128089.89/min [200000], rate=126315.79/min [210000], rate=127272.73/min [220000], rate=126923.08/min [230000], rate=127777.78/min [240000], rate=129729.73/min [250000], rate=130434.78/min [260000], rate=128925.62/min [270000], rate=126562.50/min [280000], rate=124444.44/min [290000], rate=125179.86/min [300000], rate=124137.93/min [310000], rate=124832.21/min [320000], rate=125490.20/min [330000], rate=124528.30/min [340000], rate=94883.72/min [350000], rate=74468.09/min [360000], rate=61016.95/min [370000], rate=53753.03/min [380000], rate=47698.74/min [390000], rate=44067.80/min [400000], rate=39933.44/min [410000], rate=36552.75/min [420000], rate=33555.26/min [430000], rate=31734.32/min [440000], rate=30309.99/min [450000], rate=29508.20/min [460000], rate=28720.08/min [470000], rate=27783.25/min [480000], rate=27169.81/min [490000], rate=26133.33/min [500000], rate=25210.08/min [510000], rate=24519.23/min [520000], rate=23762.38/min [530000], rate=23160.96/min [540000], rate=22752.81/min [550000], rate=22494.89/min [560000], rate=22414.94/min [570000], rate=22280.13/min [580000], rate=21997.47/min [590000], rate=21744.47/min [600000], rate=21454.11/min [610000], rate=21266.71/min [620000], rate=21293.65/min [630000], rate=21319.80/min [640000], rate=21203.75/min [650000], rate=21264.99/min [660000], rate=21393.84/min [670000], rate=21462.89/min [680000], rate=21484.99/min [690000], rate=21351.21/min [700000], rate=21169.35/min [710000], rate=21120.48/min [720000], rate=21197.25/min [730000], rate=21220.93/min [740000], rate=21163.01/min [750000], rate=21047.71/min [760000], rate=20965.52/min [770000], rate=20876.64/min [780000], rate=20995.96/min [790000], rate=21113.59/min [800000], rate=21108.18/min [810000], rate=21093.75/min [820000], rate=21225.19/min [830000], rate=21318.49/min [840000], rate=21301.78/min [850000], rate=21303.26/min [860000], rate=21428.57/min [870000], rate=21561.34/min [880000], rate=21701.60/min [890000], rate=21849.43/min [900000], rate=22004.89/min [910000], rate=22087.38/min [920000], rate=22195.42/min [930000], rate=22107.77/min [940000], rate=22152.40/min [950000], rate=22204.91/min [960000], rate=22299.65/min [970000], rate=22341.65/min [980000], rate=22400.00/min [990000], rate=22347.63/min [1000000], rate=22329.74/min [1010000], rate=22378.14/min [1020000], rate=22475.21/min [1030000], rate=22571.22/min [1040000], rate=22641.51/min [1050000], rate=22710.89/min [1060000], rate=22787.53/min [1070000], rate=22871.39/min [1080000], rate=22954.30/min [1090000], rate=23028.17/min [1100000], rate=23125.44/min [1110000], rate=23221.76/min [1120000], rate=23333.33/min [1130000], rate=23452.09/min [1140000], rate=23578.08/min [1150000], rate=23711.34/min [1160000], rate=23641.30/min [1170000], rate=23557.05/min [1180000], rate=23451.47/min [1190000], rate=23356.23/min [1200000], rate=23263.33/min [1210000], rate=23180.08/min [1220000], rate=23135.27/min [1230000], rate=23127.55/min [1240000], rate=23112.77/min [1250000], rate=23126.73/min [1260000], rate=23147.58/min [1270000], rate=23175.18/min [1280000], rate=23181.41/min [1290000], rate=23229.29/min [1300000], rate=23283.58/min [1310000], rate=23358.10/min [1320000], rate=23355.94/min [1330000], rate=23367.50/min [1340000], rate=23392.49/min [1350000], rate=23417.17/min [1360000], rate=23441.54/min [1370000], rate=23485.71/min [1380000], rate=23522.73/min [1390000], rate=23585.97/min [1400000], rate=23641.99/min [1410000], rate=23717.41/min [1420000], rate=23805.53/min [1430000], rate=23899.72/min [1440000], rate=23986.67/min [1450000], rate=24086.38/min [1460000], rate=24192.21/min [1470000], rate=24304.22/min [1480000], rate=24415.73/min [1490000], rate=24479.74/min [1500000], rate=24429.97/min [1510000], rate=24394.18/min [1520000], rate=24385.03/min [1530000], rate=24395.43/min [1540000], rate=24431.52/min [1550000], rate=24447.95/min [1560000], rate=24457.80/min [1570000], rate=24467.53/min [1580000], rate=24489.80/min [1590000], rate=24518.12/min [1600000], rate=24527.34/min [1610000], rate=24555.16/min [1620000], rate=24601.37/min [1630000], rate=24665.83/min [1640000], rate=24723.62/min [1650000], rate=24787.18/min [1660000], rate=24862.71/min [1670000], rate=24937.78/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.G2HLOFS1VD/ctat_genome_lib_build_dir --filt_file /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -parsing /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info. 6000000.00 reads per min processed... 6000000.00 reads per min processed... 9000000.00 reads per min processed... 6000000.00 reads per min processed... 5000000.00 reads per min processed... 4500000.00 reads per min processed... 4666666.67 reads per min processed... 4363636.36 reads per min processed... 4153846.15 reads per min processed... 4000000.00 reads per min processed... 4125000.00 reads per min processed... 4000000.00 reads per min processed... 4105263.16 reads per min processed... 4000000.00 reads per min processed... 3913043.48 reads per min processed... 3840000.00 reads per min processed... 3777777.78 reads per min processed... 3724137.93 reads per min processed... 3677419.35 reads per min processed... 3636363.64 reads per min processed... 3705882.35 reads per min processed... 3666666.67 reads per min processed... 3631578.95 reads per min processed... 3692307.69 reads per min processed... 3658536.59 reads per min processed... 3714285.71 reads per min processed... 3681818.18 reads per min processed... 3652173.91 reads per min processed... 3702127.66 reads per min processed... 3673469.39 reads per min processed... 3720000.00 reads per min processed... 3840000.00 reads per min processed... 3882352.94 reads per min processed... 3849056.60 reads per min processed... 3888888.89 reads per min processed... 3857142.86 reads per min processed... 3894736.84 reads per min processed... 3864406.78 reads per min processed... 3900000.00 reads per min processed... 3870967.74 reads per min processed... 3904761.90 reads per min processed... 3876923.08 reads per min processed... 3909090.91 reads per min processed... 3882352.94 reads per min processed... 3913043.48 reads per min processed... 3887323.94 reads per min processed... 3916666.67 reads per min processed... 3891891.89 reads per min processed... 3868421.05 reads per min processed... done. * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion -parsing fusion evidence: /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -outputting fusion candidates to file: /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.G2HLOFS1VD/aih-tih-sc-7fc50e-R1_B23WHYVLT4_1.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.G2HLOFS1VD/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion CMD: mkdir -p /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.filter.intermediates_dir EM: Starting log likelihood: -351987.382417 EM: Round [1] log likelihood: -351817.975429 EM: Round [2] log likelihood: -351759.661852 EM: Round [3] log likelihood: -351732.900753 EM: Round [4] log likelihood: -351718.846529 EM: Round [5] log likelihood: -351710.830467 EM: Round [6] log likelihood: -351705.957834 EM: Round [7] log likelihood: -351702.825787 EM: Round [8] log likelihood: -351700.707855 EM: Round [9] log likelihood: -351699.208945 EM: Round [10] log likelihood: -351698.104871 EM: Round [11] log likelihood: -351697.263265 EM: Round [12] log likelihood: -351696.602935 EM: Round [13] log likelihood: -351696.072215 EM: Round [14] log likelihood: -351695.637064 EM: Round [15] log likelihood: -351695.274304 EM: Round [16] log likelihood: -351694.967672 EM: Round [17] log likelihood: -351694.705441 EM: Round [18] log likelihood: -351694.478941 EM: Round [19] log likelihood: -351694.281626 EM: Round [20] log likelihood: -351694.108453 EM: Round [21] log likelihood: -351693.955472 EM: Round [22] log likelihood: -351693.819543 EM: Round [23] log likelihood: -351693.698138 EM: Round [24] log likelihood: -351693.589197 EM: Round [25] log likelihood: -351693.491024 EM: Round [26] log likelihood: -351693.402210 EM: Round [27] log likelihood: -351693.321577 EM: Round [28] log likelihood: -351693.248131 EM: Round [29] log likelihood: -351693.181028 EM: Round [30] log likelihood: -351693.119546 EM: Round [31] log likelihood: -351693.063068 EM: Round [32] log likelihood: -351693.011060 EM: Round [33] log likelihood: -351692.963058 EM: Round [34] log likelihood: -351692.918659 EM: Round [35] log likelihood: -351692.877510 EM: Round [36] log likelihood: -351692.839303 EM: Round [37] log likelihood: -351692.803764 EM: Round [38] log likelihood: -351692.770653 EM: Round [39] log likelihood: -351692.739754 EM: Round [40] log likelihood: -351692.710879 EM: Round [41] log likelihood: -351692.683856 EM: Round [42] log likelihood: -351692.658535 EM: Round [43] log likelihood: -351692.634778 EM: Round [44] log likelihood: -351692.612462 EM: Round [45] log likelihood: -351692.591478 EM: Round [46] log likelihood: -351692.571724 EM: Round [47] log likelihood: -351692.553110 EM: Round [48] log likelihood: -351692.535554 EM: Round [49] log likelihood: -351692.518980 EM: Round [50] log likelihood: -351692.503319 EM: Round [51] log likelihood: -351692.488511 EM: Round [52] log likelihood: -351692.474496 EM: Round [53] log likelihood: -351692.461224 EM: Round [54] log likelihood: -351692.448645 EM: Round [55] log likelihood: -351692.436715 EM: Round [56] log likelihood: -351692.425393 EM: Round [57] log likelihood: -351692.414642 EM: Round [58] log likelihood: -351692.404428 EM: Round [59] log likelihood: -351692.394716 EM: Round [60] log likelihood: -351692.385479 EM: Round [61] log likelihood: -351692.376688 EM: Round [62] log likelihood: -351692.368317 EM: Round [63] log likelihood: -351692.360342 EM: Round [64] log likelihood: -351692.352742 EM: Round [65] log likelihood: -351692.345495 EM: Round [66] log likelihood: -351692.338582 EM: Round [67] log likelihood: -351692.331985 EM: Round [68] log likelihood: -351692.325688 EM: Round [69] log likelihood: -351692.319673 EM: Round [70] log likelihood: -351692.313927 EM: Round [71] log likelihood: -351692.308435 EM: Round [72] log likelihood: -351692.303185 EM: Round [73] log likelihood: -351692.298164 EM: Round [74] log likelihood: -351692.293361 EM: Round [75] log likelihood: -351692.288765 EM: Round [76] log likelihood: -351692.284365 EM: Round [77] log likelihood: -351692.280152 EM: Round [78] log likelihood: -351692.276118 EM: Round [79] log likelihood: -351692.272253 EM: Round [80] log likelihood: -351692.268550 EM: Round [81] log likelihood: -351692.265001 EM: Round [82] log likelihood: -351692.261598 EM: Round [83] log likelihood: -351692.258335 EM: Round [84] log likelihood: -351692.255206 EM: Round [85] log likelihood: -351692.252204 EM: Round [86] log likelihood: -351692.249324 EM: Round [87] log likelihood: -351692.246560 EM: Round [88] log likelihood: -351692.243907 EM: Round [89] log likelihood: -351692.241360 EM: Round [90] log likelihood: -351692.238914 EM: Round [91] log likelihood: -351692.236566 EM: Round [92] log likelihood: -351692.234310 EM: Round [93] log likelihood: -351692.232143 EM: Round [94] log likelihood: -351692.230061 EM: Round [95] log likelihood: -351692.228060 EM: Round [96] log likelihood: -351692.226137 EM: Round [97] log likelihood: -351692.224289 EM: Round [98] log likelihood: -351692.222512 EM: Round [99] log likelihood: -351692.220803 EM: Round [100] log likelihood: -351692.219161 EM: Round [101] log likelihood: -351692.217581 EM: Round [102] log likelihood: -351692.216061 EM: Round [103] log likelihood: -351692.214600 EM: Round [104] log likelihood: -351692.213193 EM: Round [105] log likelihood: -351692.211841 EM: Round [106] log likelihood: -351692.210539 EM: Round [107] log likelihood: -351692.209286 EM: Round [108] log likelihood: -351692.208081 EM: Round [109] log likelihood: -351692.206920 EM: Round [110] log likelihood: -351692.205803 EM: Round [111] log likelihood: -351692.204728 EM: Round [112] log likelihood: -351692.203693 EM: Round [113] log likelihood: -351692.202696 EM: Round [114] log likelihood: -351692.201737 EM: Round [115] log likelihood: -351692.200813 EM: Round [116] log likelihood: -351692.199923 EM: Round [117] log likelihood: -351692.199066 EM: Round [118] log likelihood: -351692.198240 EM: Round [119] log likelihood: -351692.197445 EM: Round [120] log likelihood: -351692.196679 EM: Round [121] log likelihood: -351692.195941 EM: Round [122] log likelihood: -351692.195230 EM: Round [123] log likelihood: -351692.194545 EM: Round [124] log likelihood: -351692.193885 EM: Round [125] log likelihood: -351692.193249 EM: Round [126] log likelihood: -351692.192636 EM: Round [127] log likelihood: -351692.192045 EM: Round [128] log likelihood: -351692.191476 EM: Round [129] log likelihood: -351692.190928 EM: Round [130] log likelihood: -351692.190399 EM: Round [131] log likelihood: -351692.189889 EM: Round [132] log likelihood: -351692.189398 EM: Round [133] log likelihood: -351692.188924 EM: Round [134] log likelihood: -351692.188468 EM: Round [135] log likelihood: -351692.188028 EM: Round [136] log likelihood: -351692.187604 EM: Round [137] log likelihood: -351692.187194 EM: Round [138] log likelihood: -351692.186800 EM: Round [139] log likelihood: -351692.186420 EM: Round [140] log likelihood: -351692.186053 EM: Round [141] log likelihood: -351692.185699 EM: Round [142] log likelihood: -351692.185358 EM: Round [143] log likelihood: -351692.185030 EM: Round [144] log likelihood: -351692.184712 EM: Round [145] log likelihood: -351692.184407 EM: Round [146] log likelihood: -351692.184112 EM: Round [147] log likelihood: -351692.183827 EM: Round [148] log likelihood: -351692.183553 EM: Round [149] log likelihood: -351692.183288 EM: Round [150] log likelihood: -351692.183033 EM: Round [151] log likelihood: -351692.182787 EM: Round [152] log likelihood: -351692.182549 EM: Round [153] log likelihood: -351692.182320 EM: Round [154] log likelihood: -351692.182099 EM: Round [155] log likelihood: -351692.181886 EM: Round [156] log likelihood: -351692.181680 EM: Round [157] log likelihood: -351692.181481 EM: Round [158] log likelihood: -351692.181290 EM: Round [159] log likelihood: -351692.181105 EM: Round [160] log likelihood: -351692.180927 EM: Round [161] log likelihood: -351692.180755 EM: Round [162] log likelihood: -351692.180589 EM: Round [163] log likelihood: -351692.180429 EM: Round [164] log likelihood: -351692.180274 EM: Round [165] log likelihood: -351692.180125 EM: Round [166] log likelihood: -351692.179981 EM: Round [167] log likelihood: -351692.179843 EM: Round [168] log likelihood: -351692.179709 EM: Round [169] log likelihood: -351692.179579 EM: Round [170] log likelihood: -351692.179454 EM: Round [171] log likelihood: -351692.179334 EM: Round [172] log likelihood: -351692.179218 EM: Round [173] log likelihood: -351692.179106 EM: Round [174] log likelihood: -351692.178997 EM: Round [175] log likelihood: -351692.178893 EM: Round [176] log likelihood: -351692.178792 EM: Round [177] log likelihood: -351692.178695 EM: Stopping iterations at round 177 due to insufficient improvement in likelihood. EM: Starting log likelihood: -351583.419063 EM: Round [1] log likelihood: -351439.555159 EM: Round [2] log likelihood: -351390.687975 EM: Round [3] log likelihood: -351368.666182 EM: Round [4] log likelihood: -351357.311952 EM: Round [5] log likelihood: -351350.950996 EM: Round [6] log likelihood: -351347.152970 EM: Round [7] log likelihood: -351344.753919 EM: Round [8] log likelihood: -351343.157303 EM: Round [9] log likelihood: -351342.042145 EM: Round [10] log likelihood: -351341.228549 EM: Round [11] log likelihood: -351340.611842 EM: Round [12] log likelihood: -351340.128897 EM: Round [13] log likelihood: -351339.740282 EM: Round [14] log likelihood: -351339.420501 EM: Round [15] log likelihood: -351339.152509 EM: Round [16] log likelihood: -351338.924535 EM: Round [17] log likelihood: -351338.728204 EM: Round [18] log likelihood: -351338.557387 EM: Round [19] log likelihood: -351338.407483 EM: Round [20] log likelihood: -351338.274960 EM: Round [21] log likelihood: -351338.157055 EM: Round [22] log likelihood: -351338.051565 EM: Round [23] log likelihood: -351337.956712 EM: Round [24] log likelihood: -351337.871041 EM: Round [25] log likelihood: -351337.793346 EM: Round [26] log likelihood: -351337.722624 EM: Round [27] log likelihood: -351337.658026 EM: Round [28] log likelihood: -351337.598837 EM: Round [29] log likelihood: -351337.544443 EM: Round [30] log likelihood: -351337.494320 EM: Round [31] log likelihood: -351337.448015 EM: Round [32] log likelihood: -351337.405135 EM: Round [33] log likelihood: -351337.365340 EM: Round [34] log likelihood: -351337.328329 EM: Round [35] log likelihood: -351337.293843 EM: Round [36] log likelihood: -351337.261650 EM: Round [37] log likelihood: -351337.231548 EM: Round [38] log likelihood: -351337.203354 EM: Round [39] log likelihood: -351337.176910 EM: Round [40] log likelihood: -351337.152072 EM: Round [41] log likelihood: -351337.128712 EM: Round [42] log likelihood: -351337.106714 EM: Round [43] log likelihood: -351337.085977 EM: Round [44] log likelihood: -351337.066406 EM: Round [45] log likelihood: -351337.047917 EM: Round [46] log likelihood: -351337.030433 EM: Round [47] log likelihood: -351337.013886 EM: Round [48] log likelihood: -351336.998211 EM: Round [49] log likelihood: -351336.983351 EM: Round [50] log likelihood: -351336.969253 EM: Round [51] log likelihood: -351336.955868 EM: Round [52] log likelihood: -351336.943152 EM: Round [53] log likelihood: -351336.931063 EM: Round [54] log likelihood: -351336.919565 EM: Round [55] log likelihood: -351336.908621 EM: Round [56] log likelihood: -351336.898199 EM: Round [57] log likelihood: -351336.888270 EM: Round [58] log likelihood: -351336.878806 EM: Round [59] log likelihood: -351336.869780 EM: Round [60] log likelihood: -351336.861168 EM: Round [61] log likelihood: -351336.852949 EM: Round [62] log likelihood: -351336.845101 EM: Round [63] log likelihood: -351336.837604 EM: Round [64] log likelihood: -351336.830440 EM: Round [65] log likelihood: -351336.823592 EM: Round [66] log likelihood: -351336.817044 EM: Round [67] log likelihood: -351336.810781 EM: Round [68] log likelihood: -351336.804788 EM: Round [69] log likelihood: -351336.799053 EM: Round [70] log likelihood: -351336.793562 EM: Round [71] log likelihood: -351336.788303 EM: Round [72] log likelihood: -351336.783266 EM: Round [73] log likelihood: -351336.778440 EM: Round [74] log likelihood: -351336.773816 EM: Round [75] log likelihood: -351336.769383 EM: Round [76] log likelihood: -351336.765132 EM: Round [77] log likelihood: -351336.761056 EM: Round [78] log likelihood: -351336.757147 EM: Round [79] log likelihood: -351336.753396 EM: Round [80] log likelihood: -351336.749797 EM: Round [81] log likelihood: -351336.746343 EM: Round [82] log likelihood: -351336.743028 EM: Round [83] log likelihood: -351336.739845 EM: Round [84] log likelihood: -351336.736789 EM: Round [85] log likelihood: -351336.733854 EM: Round [86] log likelihood: -351336.731035 EM: Round [87] log likelihood: -351336.728326 EM: Round [88] log likelihood: -351336.725724 EM: Round [89] log likelihood: -351336.723224 EM: Round [90] log likelihood: -351336.720821 EM: Round [91] log likelihood: -351336.718511 EM: Round [92] log likelihood: -351336.716291 EM: Round [93] log likelihood: -351336.714156 EM: Round [94] log likelihood: -351336.712103 EM: Round [95] log likelihood: -351336.710129 EM: Round [96] log likelihood: -351336.708231 EM: Round [97] log likelihood: -351336.706405 EM: Round [98] log likelihood: -351336.704648 EM: Round [99] log likelihood: -351336.702959 EM: Round [100] log likelihood: -351336.701333 EM: Round [101] log likelihood: -351336.699768 EM: Round [102] log likelihood: -351336.698263 EM: Round [103] log likelihood: -351336.696814 EM: Round [104] log likelihood: -351336.695419 EM: Round [105] log likelihood: -351336.694077 EM: Round [106] log likelihood: -351336.692784 EM: Round [107] log likelihood: -351336.691540 EM: Round [108] log likelihood: -351336.690343 EM: Round [109] log likelihood: -351336.689189 EM: Round [110] log likelihood: -351336.688079 EM: Round [111] log likelihood: -351336.687009 EM: Round [112] log likelihood: -351336.685979 EM: Round [113] log likelihood: -351336.684987 EM: Round [114] log likelihood: -351336.684031 EM: Round [115] log likelihood: -351336.683111 EM: Round [116] log likelihood: -351336.682224 EM: Round [117] log likelihood: -351336.681370 EM: Round [118] log likelihood: -351336.680547 EM: Round [119] log likelihood: -351336.679754 EM: Round [120] log likelihood: -351336.678990 EM: Round [121] log likelihood: -351336.678254 EM: Round [122] log likelihood: -351336.677545 EM: Round [123] log likelihood: -351336.676861 EM: Round [124] log likelihood: -351336.676202 EM: Round [125] log likelihood: -351336.675567 EM: Round [126] log likelihood: -351336.674955 EM: Round [127] log likelihood: -351336.674365 EM: Round [128] log likelihood: -351336.673796 EM: Round [129] log likelihood: -351336.673248 EM: Round [130] log likelihood: -351336.672720 EM: Round [131] log likelihood: -351336.672211 EM: Round [132] log likelihood: -351336.671719 EM: Round [133] log likelihood: -351336.671246 EM: Round [134] log likelihood: -351336.670790 EM: Round [135] log likelihood: -351336.670349 EM: Round [136] log likelihood: -351336.669925 EM: Round [137] log likelihood: -351336.669516 EM: Round [138] log likelihood: -351336.669121 EM: Round [139] log likelihood: -351336.668741 EM: Round [140] log likelihood: -351336.668374 EM: Round [141] log likelihood: -351336.668020 EM: Round [142] log likelihood: -351336.667679 EM: Round [143] log likelihood: -351336.667350 EM: Round [144] log likelihood: -351336.667032 EM: Round [145] log likelihood: -351336.666726 EM: Round [146] log likelihood: -351336.666431 EM: Round [147] log likelihood: -351336.666146 EM: Round [148] log likelihood: -351336.665871 EM: Round [149] log likelihood: -351336.665606 EM: Round [150] log likelihood: -351336.665350 EM: Round [151] log likelihood: -351336.665104 EM: Round [152] log likelihood: -351336.664866 EM: Round [153] log likelihood: -351336.664636 EM: Round [154] log likelihood: -351336.664415 EM: Round [155] log likelihood: -351336.664201 EM: Round [156] log likelihood: -351336.663995 EM: Round [157] log likelihood: -351336.663796 EM: Round [158] log likelihood: -351336.663604 EM: Round [159] log likelihood: -351336.663419 EM: Round [160] log likelihood: -351336.663241 EM: Round [161] log likelihood: -351336.663068 EM: Round [162] log likelihood: -351336.662902 EM: Round [163] log likelihood: -351336.662741 EM: Round [164] log likelihood: -351336.662587 EM: Round [165] log likelihood: -351336.662437 EM: Round [166] log likelihood: -351336.662293 EM: Round [167] log likelihood: -351336.662154 EM: Round [168] log likelihood: -351336.662019 EM: Round [169] log likelihood: -351336.661890 EM: Round [170] log likelihood: -351336.661765 EM: Round [171] log likelihood: -351336.661644 EM: Round [172] log likelihood: -351336.661527 EM: Round [173] log likelihood: -351336.661415 EM: Round [174] log likelihood: -351336.661306 EM: Round [175] log likelihood: -351336.661202 EM: Round [176] log likelihood: -351336.661100 EM: Round [177] log likelihood: -351336.661003 EM: Stopping iterations at round 177 due to insufficient improvement in likelihood. CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.G2HLOFS1VD/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.G2HLOFS1VD/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.G2HLOFS1VD/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20 CMD: cp /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged CMD: ln -sf /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered * Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 180961779 > /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM * Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.G2HLOFS1VD/ctat_genome_lib_build_dir > /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo