Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/a09e61136c259d28b3f82367af7c0c/aih-tih-sc-505123-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/5a82c7f3bff9c89baf3341b4e83996/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/5a82c7f3bff9c89baf3341b4e83996/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
Processed 20000000 records
Processed 21000000 records
Processed 22000000 records
Processed 23000000 records
Processed 24000000 records
Processed 25000000 records
Processed 26000000 records
Processed 27000000 records
Processed 28000000 records
Processed 29000000 records
Processed 30000000 records
Processed 31000000 records
Processed 32000000 records
Processed 33000000 records
Processed 34000000 records
Processed 35000000 records
Processed 36000000 records
Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
Processed 43000000 records
Processed 44000000 records
Processed 45000000 records
Processed 46000000 records
Processed 47000000 records
Processed 48000000 records
Processed 49000000 records
Processed 50000000 records
Processed 51000000 records
Processed 52000000 records
Processed 53000000 records
Processed 54000000 records
Processed 55000000 records
Processed 56000000 records
Processed 57000000 records
Processed 58000000 records
Processed 59000000 records
Processed 60000000 records
Processed 61000000 records
Processed 62000000 records
Processed 63000000 records
Processed 64000000 records
Processed 65000000 records
Processed 66000000 records
Processed 67000000 records
Processed 68000000 records
Processed 69000000 records
Processed 70000000 records
Processed 71000000 records
Processed 72000000 records
Processed 73000000 records
Processed 74000000 records
Processed 75000000 records
Processed 76000000 records
Processed 77000000 records
Processed 78000000 records
Processed 79000000 records
Processed 80000000 records
Processed 81000000 records
Processed 82000000 records
Processed 83000000 records
Processed 84000000 records
Processed 85000000 records
Processed 86000000 records
Processed 87000000 records
Processed 88000000 records
Processed 89000000 records
Processed 90000000 records
Processed 91000000 records
Processed 92000000 records
Processed 93000000 records
Processed 94000000 records
Processed 95000000 records
Processed 96000000 records
Processed 97000000 records
Processed 98000000 records
Processed 99000000 records
Processed 100000000 records
Processed 101000000 records
Processed 102000000 records
Processed 103000000 records
Processed 104000000 records
Processed 105000000 records
Processed 106000000 records
Processed 107000000 records
Processed 108000000 records
Processed 109000000 records
Processed 110000000 records
Processed 111000000 records
Processed 112000000 records
Processed 113000000 records
Processed 114000000 records
Processed 115000000 records
Processed 116000000 records
Processed 117000000 records
Processed 118000000 records
Processed 119000000 records
Processed 120000000 records
Processed 121000000 records
Processed 122000000 records
Processed 123000000 records
Processed 124000000 records
Processed 125000000 records
Processed 126000000 records
Processed 127000000 records
Processed 128000000 records
Processed 129000000 records
Processed 130000000 records
Processed 131000000 records
Processed 132000000 records
Processed 133000000 records
Processed 134000000 records
Processed 135000000 records
Processed 136000000 records
Processed 137000000 records
Processed 138000000 records
Processed 139000000 records
Processed 140000000 records
Processed 141000000 records
Processed 142000000 records
Processed 143000000 records
Processed 144000000 records
Processed 145000000 records
Processed 146000000 records
Processed 147000000 records
Processed 148000000 records
Processed 149000000 records
Processed 150000000 records
Processed 151000000 records
Processed 152000000 records
Processed 153000000 records
Processed 154000000 records
Processed 155000000 records
Processed 156000000 records
Processed 157000000 records
Processed 158000000 records
Processed 159000000 records
Processed 160000000 records
Processed 161000000 records
Processed 162000000 records
Processed 163000000 records
Processed 164000000 records
Processed 165000000 records
Processed 166000000 records
Processed 167000000 records
Processed 168000000 records
Processed 169000000 records
Processed 170000000 records
Processed 171000000 records
Processed 172000000 records
Processed 173000000 records
Processed 174000000 records
Processed 175000000 records
Processed 176000000 records
Processed 177000000 records
Processed 178000000 records
Processed 179000000 records
Processed 180000000 records
Processed 181000000 records
Processed 182000000 records
Processed 183000000 records
Processed 184000000 records
Processed 185000000 records
Processed 186000000 records
Processed 187000000 records
Processed 188000000 records
Processed 189000000 records
Processed 190000000 records
Processed 191000000 records
Processed 192000000 records
Processed 193000000 records
Processed 194000000 records
Processed 195000000 records
Processed 196000000 records
Processed 197000000 records
Processed 198000000 records
Processed 199000000 records
Processed 200000000 records
Processed 201000000 records
Processed 202000000 records
Processed 203000000 records
Processed 204000000 records
Processed 205000000 records
Processed 206000000 records
Processed 207000000 records
Processed 208000000 records
Processed 209000000 records
Processed 210000000 records
Processed 211000000 records
Processed 212000000 records
Processed 213000000 records
Processed 214000000 records
Processed 215000000 records
Processed 216000000 records
Processed 217000000 records
Processed 218000000 records
Processed 219000000 records
Processed 220000000 records
Processed 221000000 records
Processed 222000000 records
Processed 223000000 records
Processed 224000000 records
Processed 225000000 records
Processed 226000000 records
Processed 227000000 records
Processed 228000000 records
Processed 229000000 records
Processed 230000000 records
Processed 231000000 records
Processed 232000000 records
Processed 233000000 records
Processed 234000000 records
Processed 235000000 records
Processed 236000000 records
Processed 237000000 records
Processed 238000000 records
Processed 239000000 records
Processed 240000000 records
Processed 241000000 records
Processed 242000000 records
Processed 243000000 records
Processed 244000000 records
Processed 245000000 records
Processed 246000000 records
Processed 247000000 records
Processed 248000000 records
Processed 249000000 records
Processed 250000000 records
Processed 251000000 records
Processed 252000000 records
Processed 253000000 records
Processed 254000000 records
Processed 255000000 records
Processed 256000000 records
Processed 257000000 records
Processed 258000000 records
Processed 259000000 records
Processed 260000000 records
Processed 261000000 records
Processed 262000000 records
Processed 263000000 records
Processed 264000000 records
Processed 265000000 records
Processed 266000000 records
paired = 131799217
unpaired = 2464897
MERGED PAIRED END READS = 131799217
MATES PROCESSED = 266063331
TOTAL READS = 134264114
DISTINCT READS = 5.5993e+07
DISTINCT COUNTS = 457
MAX COUNT = 545646
COUNTS OF 1 = 2.61572e+07
MAX TERMS = 100
OBSERVED COUNTS (545647)
1 26157230
2 13016297
3 7001992
4 3857264
5 2180021
6 1266880
7 767784
8 487567
9 320824
10 219299
11 155166
12 112936
13 84093
14 64116
15 49195
16 38802
17 30733
18 24667
19 20412
20 16774
21 14034
22 11869
23 10192
24 8691
25 7410
26 6638
27 5661
28 4848
29 4450
30 3879
31 3571
32 3065
33 2775
34 2505
35 2200
36 1967
37 1839
38 1717
39 1464
40 1444
41 1262
42 1216
43 1105
44 1007
45 987
46 767
47 747
48 684
49 687
50 578
51 556
52 572
53 534
54 475
55 461
56 425
57 361
58 381
59 345
60 324
61 299
62 286
63 261
64 245
65 247
66 211
67 208
68 191
69 217
70 177
71 164
72 172
73 171
74 157
75 147
76 127
77 131
78 108
79 129
80 120
81 97
82 94
83 113
84 101
85 84
86 90
87 77
88 82
89 65
90 76
91 57
92 72
93 58
94 61
95 56
96 48
97 45
98 58
99 52
100 50
101 49
102 57
103 42
104 36
105 38
106 35
107 39
108 50
109 39
110 30
111 32
112 30
113 31
114 35
115 35
116 30
117 17
118 26
119 31
120 22
121 31
122 29
123 23
124 24
125 23
126 23
127 25
128 17
129 23
130 20
131 24
132 16
133 23
134 11
135 21
136 12
137 16
138 17
139 17
140 9
141 23
142 17
143 8
144 11
145 16
146 14
147 15
148 16
149 14
150 8
151 8
152 10
153 5
154 9
155 7
156 7
157 10
158 17
159 8
160 9
161 15
162 11
163 10
164 9
165 10
166 6
167 12
168 9
169 5
170 6
171 8
172 10
173 3
174 4
175 6
176 9
177 7
178 9
179 12
180 9
181 7
182 6
183 4
184 6
185 7
186 8
187 5
188 5
189 9
190 4
191 3
192 7
193 1
194 8
195 3
196 7
197 5
198 2
199 2
200 5
201 5
202 5
203 5
204 3
205 8
206 1
207 6
208 1
209 2
210 5
211 7
212 5
213 3
214 2
215 5
216 2
217 4
218 2
219 4
221 1
222 3
223 3
224 3
225 1
226 2
227 4
228 5
229 2
230 1
231 1
232 3
233 3
234 2
235 1
236 4
238 2
239 1
240 2
241 1
243 2
245 2
246 5
247 3
248 3
249 3
251 3
252 2
253 2
254 3
257 2
258 1
259 1
260 3
261 2
262 5
263 3
264 1
265 4
266 1
267 1
268 1
269 3
270 2
272 1
275 2
276 2
277 2
278 3
279 1
280 4
281 2
282 2
283 1
284 1
287 1
288 1
290 2
292 2
294 1
295 1
296 3
298 1
300 1
303 3
304 1
305 2
307 1
309 1
310 1
311 1
313 1
314 1
315 1
317 3
318 1
319 1
321 2
323 1
327 1
328 1
329 1
331 1
332 2
333 1
335 2
338 2
339 2
342 1
345 1
346 1
347 1
348 1
349 2
354 1
356 1
361 1
363 1
364 1
372 1
375 1
379 1
383 1
386 1
390 1
393 3
403 2
404 1
405 1
412 1
414 1
416 1
418 1
422 1
428 1
430 1
432 1
435 1
438 1
446 1
447 1
448 1
449 2
451 1
457 1
462 1
466 1
474 1
477 1
479 1
487 1
488 1
492 1
495 1
496 2
499 1
502 1
511 1
515 1
529 1
534 1
542 1
543 1
548 1
553 2
554 1
555 1
556 1
559 1
589 1
595 1
602 2
607 1
608 1
610 1
619 1
626 2
627 1
629 3
642 1
649 1
650 1
681 1
682 1
688 1
691 1
696 1
699 1
703 2
714 1
715 1
716 1
722 1
728 1
731 1
737 1
742 1
758 1
762 1
770 1
773 1
778 1
781 1
782 1
792 1
806 1
808 1
810 1
824 1
826 1
842 1
849 1
855 1
862 2
865 1
867 2
869 1
878 1
892 1
897 1
918 1
940 1
961 1
965 1
975 1
977 1
981 1
990 1
998 1
1007 1
1009 1
1012 1
1042 1
1057 1
1103 1
1116 1
1119 1
1201 1
1311 1
1345 1
1360 1
1389 1
1404 1
1494 1
1544 1
1642 1
1717 1
1746 1
1824 1
2303 1
2746 1
2989 1
3458 1
3808 1
4754 1
6332 1
19306 1
545646 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
....._...._................_...__.........._....._..._..._.__....._.....
__._...__...__.........._...__......._...__._._...._....
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]