Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/4ea539895f224e1427a94ee0e8d7a2/aih-tih-sc-0fc41c-R1_B23WHYVLT4_1.Chimeric.out.junction Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/ad8253b30eee4587ba36e428b32a26/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/5276422f4e28fe82d6bf5efd37cce5/aih-tih-sc-0fc41c-R1_B23WHYVLT4_1_2.fastp.fastq.gz Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/ad8253b30eee4587ba36e428b32a26/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/5276422f4e28fe82d6bf5efd37cce5/aih-tih-sc-0fc41c-R1_B23WHYVLT4_1_1.fastp.fastq.gz ==> STAGING COMPLETE (6 inputs) -ctat genome lib [/tmp/nxf.aGCvp0Rwf8/ctat_genome_lib_build_dir] validates. CMD: mkdir -p /tmp/nxf.aGCvp0Rwf8/./_starF_checkpoints CMD: mkdir -p /tmp/nxf.aGCvp0Rwf8/./star-fusion.preliminary -sample contains 225243059 rnaseq fragments * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.aGCvp0Rwf8/ctat_genome_lib_build_dir -J /tmp/nxf.aGCvp0Rwf8/aih-tih-sc-0fc41c-R1_B23WHYVLT4_1.Chimeric.out.junction -O /tmp/nxf.aGCvp0Rwf8/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 -parsing fusion evidence: /tmp/nxf.aGCvp0Rwf8/aih-tih-sc-0fc41c-R1_B23WHYVLT4_1.Chimeric.out.junction -building interval tree based on /tmp/nxf.aGCvp0Rwf8/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.08 min). -mapping reads to genes [10000], rate=60000.00/min [20000], rate=60000.00/min [30000], rate=64285.71/min [40000], rate=64864.86/min [50000], rate=66666.67/min [60000], rate=67924.53/min [70000], rate=70000.00/min [80000], rate=71641.79/min [90000], rate=72972.97/min [100000], rate=74074.07/min [110000], rate=75000.00/min [120000], rate=75000.00/min [130000], rate=75728.16/min [140000], rate=76363.64/min [150000], rate=75000.00/min [160000], rate=74418.60/min [170000], rate=72857.14/min [180000], rate=73469.39/min [190000], rate=73548.39/min [200000], rate=72727.27/min [210000], rate=72413.79/min [220000], rate=71739.13/min [230000], rate=71502.59/min [240000], rate=71287.13/min [250000], rate=71090.05/min [260000], rate=69333.33/min [270000], rate=60674.16/min [280000], rate=53503.18/min [290000], rate=46774.19/min [300000], rate=41666.67/min [310000], rate=38509.32/min [320000], rate=37500.00/min [330000], rate=37078.65/min [340000], rate=36823.10/min [350000], rate=34539.47/min [360000], rate=33697.35/min [370000], rate=32314.41/min [380000], rate=31404.96/min [390000], rate=30429.13/min [400000], rate=29887.92/min [410000], rate=30110.16/min [420000], rate=29964.33/min [430000], rate=29351.54/min [440000], rate=28820.96/min [450000], rate=28511.09/min [460000], rate=28249.74/min [470000], rate=27755.91/min [480000], rate=27221.17/min [490000], rate=26849.32/min [500000], rate=26455.03/min [510000], rate=26402.07/min [520000], rate=26712.33/min [530000], rate=26994.91/min [540000], rate=27318.72/min [550000], rate=27615.06/min [560000], rate=27906.98/min [570000], rate=28217.82/min [580000], rate=28501.23/min [590000], rate=28803.91/min [600000], rate=29102.67/min [610000], rate=29397.59/min [620000], rate=29712.46/min [630000], rate=30023.83/min [640000], rate=30331.75/min [650000], rate=30684.50/min [660000], rate=31010.18/min [670000], rate=31308.41/min [680000], rate=31627.91/min [690000], rate=31944.44/min [700000], rate=31987.81/min [710000], rate=32006.01/min [720000], rate=32023.72/min [730000], rate=32087.91/min [740000], rate=32150.62/min [750000], rate=32188.84/min [760000], rate=32044.98/min [770000], rate=31818.18/min [780000], rate=31707.32/min [790000], rate=31769.44/min [800000], rate=31851.36/min [810000], rate=31910.70/min [820000], rate=31968.81/min [830000], rate=32046.33/min [840000], rate=32101.91/min [850000], rate=32176.66/min [860000], rate=32250.00/min [870000], rate=32301.98/min [880000], rate=32392.64/min [890000], rate=32481.75/min [900000], rate=32530.12/min [910000], rate=32635.98/min [920000], rate=32701.42/min [930000], rate=32765.71/min [940000], rate=32847.99/min [950000], rate=32947.98/min [960000], rate=33065.44/min [970000], rate=33181.30/min [980000], rate=33295.58/min [990000], rate=33427.12/min [1000000], rate=33500.84/min [1010000], rate=33573.41/min [1020000], rate=33700.44/min [1030000], rate=33788.96/min [1040000], rate=33894.62/min [1050000], rate=33998.92/min [1060000], rate=34138.49/min [1070000], rate=34294.87/min [1080000], rate=34431.46/min [1090000], rate=34584.88/min [1100000], rate=34736.84/min [1110000], rate=34905.66/min [1120000], rate=35073.07/min [1130000], rate=35257.41/min [1140000], rate=35422.06/min [1150000], rate=35603.72/min [1160000], rate=35784.06/min [1170000], rate=35944.70/min [1180000], rate=36140.89/min [1190000], rate=36298.93/min [1200000], rate=36474.16/min [1210000], rate=36666.67/min [1220000], rate=36765.44/min [1230000], rate=36863.14/min [1240000], rate=36959.76/min [1250000], rate=37073.65/min [1260000], rate=37186.42/min [1270000], rate=37316.36/min [1280000], rate=37426.90/min [1290000], rate=37572.82/min [1300000], rate=37699.37/min [1310000], rate=37861.27/min [1320000], rate=38003.84/min [1330000], rate=38127.09/min [1340000], rate=38267.49/min [1350000], rate=38425.05/min [1360000], rate=38563.33/min [1370000], rate=38718.79/min [1380000], rate=38891.50/min [1390000], rate=39044.94/min [1400000], rate=39160.84/min [1410000], rate=39348.84/min [1420000], rate=39609.48/min [1430000], rate=39777.47/min [1440000], rate=39926.06/min [1450000], rate=40110.65/min [1460000], rate=40312.93/min [1470000], rate=40477.28/min [1480000], rate=40585.01/min [1490000], rate=40728.93/min [1500000], rate=40909.09/min [1510000], rate=41107.08/min [1520000], rate=41285.65/min [1530000], rate=41388.64/min [1540000], rate=41584.16/min [1550000], rate=41797.75/min [1560000], rate=41973.09/min [1570000], rate=42128.80/min [1580000], rate=42302.54/min [1590000], rate=42475.51/min [1600000], rate=42647.71/min [1610000], rate=42838.14/min [1620000], rate=42932.86/min [1630000], rate=43083.70/min [1640000], rate=43233.74/min [1650000], rate=43421.05/min [1660000], rate=43550.50/min [1670000], rate=43698.21/min [1680000], rate=43864.23/min [1690000], rate=44029.53/min [1700000], rate=44155.84/min [1710000], rate=44281.40/min [1720000], rate=44368.01/min [1730000], rate=44511.15/min [1740000], rate=44615.38/min [1750000], rate=44718.91/min [1760000], rate=44859.81/min [1770000], rate=44942.87/min [1780000], rate=45006.32/min [1790000], rate=45088.16/min [1800000], rate=45169.39/min [1810000], rate=45268.86/min [1820000], rate=45386.53/min [1830000], rate=45465.84/min [1840000], rate=45563.35/min [1850000], rate=45641.45/min [1860000], rate=45756.46/min [1870000], rate=45870.81/min [1880000], rate=45965.77/min [1890000], rate=46078.83/min [1900000], rate=45838.36/min [1910000], rate=45512.31/min [1920000], rate=45247.45/min [1930000], rate=45040.84/min [1940000], rate=44734.82/min [1950000], rate=44673.54/min [1960000], rate=44579.23/min [1970000], rate=44469.53/min [1980000], rate=44328.36/min [1990000], rate=44222.22/min [2000000], rate=44150.11/min [2010000], rate=43950.44/min [2020000], rate=43913.04/min [2030000], rate=43891.89/min [2040000], rate=43886.70/min [2050000], rate=43881.56/min [2060000], rate=43892.05/min [2070000], rate=43917.96/min [2080000], rate=43943.66/min [2090000], rate=43969.14/min [2100000], rate=44025.16/min [2110000], rate=44080.78/min [2120000], rate=43968.20/min [2130000], rate=43737.17/min [2140000], rate=43614.13/min [2150000], rate=43684.39/min [2160000], rate=43828.20/min