File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/7a515e842b438fd61a09ba82a96efb/.command.log
Size
1.7 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-976eb1-R1_B23WHYVLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-8900cb43-4dca-49ac-a290-1d176a2e0012/bb/b9dd0d6df869a3d0edd9f161adc899/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/7a515e842b438fd61a09ba82a96efb/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/d7e286153e737c820a103f9f935786/aih-tih-sc-976eb1-R1_B23WHYVLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/7a515e842b438fd61a09ba82a96efb/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/f0d5416f6e8a328ce13e2f810ba152/aih-tih-sc-976eb1-R1_B23WHYVLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
FSIP1--AC013652.1
starfusion
arriba
STX16--NPEPL1
arriba
TVP23C--CDRT4
arriba

  0%|          | 0/3 [00:00<?, ?it/s]
Processing FSIP1--AC013652.1:   0%|          | 0/3 [00:00<?, ?it/s]
Processing FSIP1--AC013652.1:  33%|███▎      | 1/3 [00:00<00:00,  9.11it/s]
Processing STX16--NPEPL1:  33%|███▎      | 1/3 [00:00<00:00,  9.11it/s]    
Processing STX16--NPEPL1:  67%|██████▋   | 2/3 [00:00<00:00,  9.36it/s]
Processing TVP23C--CDRT4:  67%|██████▋   | 2/3 [00:00<00:00,  9.36it/s]
Processing TVP23C--CDRT4: 100%|██████████| 3/3 [00:00<00:00,  9.44it/s]
Processing TVP23C--CDRT4: 100%|██████████| 3/3 [00:00<00:00,  9.38it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory