File Info

Filename
aih-tih-sc-2a5468-R1_B23WHYVLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/fb89939eba61d5b706cbb1ad481589/aih-tih-sc-2a5468-R1_B23WHYVLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 08:29:47
                             Started mapping on |	Jun 08 08:31:31
                                    Finished on |	Jun 08 09:30:58
       Mapping speed, Million of reads per hour |	296.40

                          Number of input reads |	293687150
                      Average input read length |	253
                                    UNIQUE READS:
                   Uniquely mapped reads number |	279735854
                        Uniquely mapped reads % |	95.25%
                          Average mapped length |	253.43
                       Number of splices: Total |	330492499
            Number of splices: Annotated (sjdb) |	326330144
                       Number of splices: GT/AG |	327206336
                       Number of splices: GC/AG |	2423392
                       Number of splices: AT/AC |	311632
               Number of splices: Non-canonical |	551139
                      Mismatch rate per base, % |	0.18%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.09
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.57
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8027898
             % of reads mapped to multiple loci |	2.73%
        Number of reads mapped to too many loci |	281593
             % of reads mapped to too many loci |	0.10%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	481343
       % of reads unmapped: too many mismatches |	0.16%
            Number of reads unmapped: too short |	3428884
                 % of reads unmapped: too short |	1.17%
                Number of reads unmapped: other |	291603
                     % of reads unmapped: other |	0.10%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3937955
                            % of chimeric reads |	1.34%