Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/013786bf60e48795a82bf865049234/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/bb5e6091f8b94131e6914d3e75a3ea/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/bb5e6091f8b94131e6914d3e75a3ea/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/c3a872b13b04e87d8c489ba26c2dca/aih-tih-sc-1d9134-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/c9d89dceb8ea0fc52bb470c68ae975/aih-tih-sc-1d9134-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 296445772
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-1d9134-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	296445772
Known Splicing Events:	294439718
Partial Novel Splicing Events:	1086558
Novel Splicing Events:	835892
Filtered Splicing Events:	83604

Total splicing  Junctions:	524057
Known Splicing Junctions:	264348
Partial Novel Splicing Junctions:	135178
Novel Splicing Junctions:	124531

===================================================================
Create BED file ...
Create Interact file ...