Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/af039ecb809240e8e7b4d76e6f599e/aih-tih-sc-16054b-R1_B23WHYVLT4_1_1.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/9974715b26386cbe22e03d563a248d/aih-tih-sc-16054b-R1_B23WHYVLT4_1.Chimeric.out.junction
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/6071a9af1912f6ee25c273331e4456/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/6071a9af1912f6ee25c273331e4456/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/af039ecb809240e8e7b4d76e6f599e/aih-tih-sc-16054b-R1_B23WHYVLT4_1_2.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)

-ctat genome lib [/tmp/nxf.yfx7kWbblX/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.yfx7kWbblX/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.yfx7kWbblX/./star-fusion.preliminary
-sample contains 295455238 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.yfx7kWbblX/ctat_genome_lib_build_dir  -J /tmp/nxf.yfx7kWbblX/aih-tih-sc-16054b-R1_B23WHYVLT4_1.Chimeric.out.junction  -O /tmp/nxf.yfx7kWbblX/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.yfx7kWbblX/aih-tih-sc-16054b-R1_B23WHYVLT4_1.Chimeric.out.junction