.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:STARFUSION_WORKFLOW:STARFUSION (aih-tih-sc-97c26d-R1_B23WHYVLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/d01385ae19e3f3de1505cddd67f35b/.command.log
Size: 58.4 KB
Task: NFCORE_RNAFUSION:RNAFUSION:STARFUSION_WORKFLOW:STARFUSION (aih-tih-sc-97c26d-R1_B23WHYVLT4_1)
Attempt
Content

  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/d01385ae19e3f3de1505cddd67f35b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/ec3d966a7897e711ca9e18d6e64edd/aih-tih-sc-97c26d-R1_B23WHYVLT4_1_1.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/16113a75c96f92ece0b380257b7b3d/aih-tih-sc-97c26d-R1_B23WHYVLT4_1.Chimeric.out.junction
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/d01385ae19e3f3de1505cddd67f35b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/ec3d966a7897e711ca9e18d6e64edd/aih-tih-sc-97c26d-R1_B23WHYVLT4_1_2.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)

-ctat genome lib [/tmp/nxf.UqsmFX1wUd/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.UqsmFX1wUd/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary
-sample contains 110441127 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.UqsmFX1wUd/ctat_genome_lib_build_dir  -J /tmp/nxf.UqsmFX1wUd/aih-tih-sc-97c26d-R1_B23WHYVLT4_1.Chimeric.out.junction  -O /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.UqsmFX1wUd/aih-tih-sc-97c26d-R1_B23WHYVLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.UqsmFX1wUd/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.12 min).
-mapping reads to genes

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[1040000], rate=55368.23/min -building interval tree based on /tmp/nxf.UqsmFX1wUd/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

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[1040000], rate=53333.33/min -building interval tree based on /tmp/nxf.UqsmFX1wUd/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

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[1030000], rate=49243.03/min -building interval tree based on /tmp/nxf.UqsmFX1wUd/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

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[1030000], rate=46396.40/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.UqsmFX1wUd/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 5142857.14 reads per min processed...  
 5250000.00 reads per min processed...  
 5333333.33 reads per min processed...  
 4909090.91 reads per min processed...  
 5000000.00 reads per min processed...  
 5076923.08 reads per min processed...  
 4800000.00 reads per min processed...  
 4875000.00 reads per min processed...  
 4941176.47 reads per min processed...  
 4736842.11 reads per min processed...  
 4800000.00 reads per min processed...  
 4857142.86 reads per min processed...  
 4909090.91 reads per min processed...  
 4956521.74 reads per min processed...  
 5000000.00 reads per min processed...  
 5040000.00 reads per min processed...  
 5076923.08 reads per min processed...  
 5111111.11 reads per min processed...  
 4965517.24 reads per min processed...  
 5000000.00 reads per min processed...  
 5032258.06 reads per min processed...  
 5062500.00 reads per min processed...  
 5090909.09 reads per min processed...  
 4971428.57 reads per min processed...  
 5000000.00 reads per min processed...  
 5027027.03 reads per min processed...  
 5052631.58 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.UqsmFX1wUd/aih-tih-sc-97c26d-R1_B23WHYVLT4_1.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.UqsmFX1wUd/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -148910.160004
EM: Round [1] log likelihood: -148839.875913
EM: Round [2] log likelihood: -148813.738044
EM: Round [3] log likelihood: -148801.439296
EM: Round [4] log likelihood: -148795.035191
EM: Round [5] log likelihood: -148791.450175
EM: Round [6] log likelihood: -148789.304283
EM: Round [7] log likelihood: -148787.934707
EM: Round [8] log likelihood: -148787.007734
EM: Round [9] log likelihood: -148786.347441
EM: Round [10] log likelihood: -148785.856564
EM: Round [11] log likelihood: -148785.478689
EM: Round [12] log likelihood: -148785.179528
EM: Round [13] log likelihood: -148784.937294
EM: Round [14] log likelihood: -148784.737562
EM: Round [15] log likelihood: -148784.570423
EM: Round [16] log likelihood: -148784.428840
EM: Round [17] log likelihood: -148784.307674
EM: Round [18] log likelihood: -148784.203074
EM: Round [19] log likelihood: -148784.112097
EM: Round [20] log likelihood: -148784.032449
EM: Round [21] log likelihood: -148783.962316
EM: Round [22] log likelihood: -148783.900243
EM: Round [23] log likelihood: -148783.845046
EM: Round [24] log likelihood: -148783.795758
EM: Round [25] log likelihood: -148783.751576
EM: Round [26] log likelihood: -148783.711829
EM: Round [27] log likelihood: -148783.675956
EM: Round [28] log likelihood: -148783.643479
EM: Round [29] log likelihood: -148783.613993
EM: Round [30] log likelihood: -148783.587150
EM: Round [31] log likelihood: -148783.562654
EM: Round [32] log likelihood: -148783.540245
EM: Round [33] log likelihood: -148783.519700
EM: Round [34] log likelihood: -148783.500825
EM: Round [35] log likelihood: -148783.483450
EM: Round [36] log likelihood: -148783.467424
EM: Round [37] log likelihood: -148783.452618
EM: Round [38] log likelihood: -148783.438915
EM: Round [39] log likelihood: -148783.426213
EM: Round [40] log likelihood: -148783.414421
EM: Round [41] log likelihood: -148783.403459
EM: Round [42] log likelihood: -148783.393253
EM: Round [43] log likelihood: -148783.383739
EM: Round [44] log likelihood: -148783.374861
EM: Round [45] log likelihood: -148783.366565
EM: Round [46] log likelihood: -148783.358805
EM: Round [47] log likelihood: -148783.351539
EM: Round [48] log likelihood: -148783.344728
EM: Round [49] log likelihood: -148783.338338
EM: Round [50] log likelihood: -148783.332339
EM: Round [51] log likelihood: -148783.326700
EM: Round [52] log likelihood: -148783.321396
EM: Round [53] log likelihood: -148783.316404
EM: Round [54] log likelihood: -148783.311702
EM: Round [55] log likelihood: -148783.307269
EM: Round [56] log likelihood: -148783.303088
EM: Round [57] log likelihood: -148783.299142
EM: Round [58] log likelihood: -148783.295416
EM: Round [59] log likelihood: -148783.291895
EM: Round [60] log likelihood: -148783.288566
EM: Round [61] log likelihood: -148783.285417
EM: Round [62] log likelihood: -148783.282438
EM: Round [63] log likelihood: -148783.279617
EM: Round [64] log likelihood: -148783.276945
EM: Round [65] log likelihood: -148783.274413
EM: Round [66] log likelihood: -148783.272013
EM: Round [67] log likelihood: -148783.269737
EM: Round [68] log likelihood: -148783.267579
EM: Round [69] log likelihood: -148783.265530
EM: Round [70] log likelihood: -148783.263585
EM: Round [71] log likelihood: -148783.261738
EM: Round [72] log likelihood: -148783.259984
EM: Round [73] log likelihood: -148783.258318
EM: Round [74] log likelihood: -148783.256734
EM: Round [75] log likelihood: -148783.255229
EM: Round [76] log likelihood: -148783.253797
EM: Round [77] log likelihood: -148783.252436
EM: Round [78] log likelihood: -148783.251140
EM: Round [79] log likelihood: -148783.249908
EM: Round [80] log likelihood: -148783.248735
EM: Round [81] log likelihood: -148783.247619
EM: Round [82] log likelihood: -148783.246556
EM: Round [83] log likelihood: -148783.245544
EM: Round [84] log likelihood: -148783.244580
EM: Round [85] log likelihood: -148783.243662
EM: Round [86] log likelihood: -148783.242787
EM: Round [87] log likelihood: -148783.241953
EM: Round [88] log likelihood: -148783.241159
EM: Round [89] log likelihood: -148783.240401
EM: Round [90] log likelihood: -148783.239679
EM: Round [91] log likelihood: -148783.238991
EM: Round [92] log likelihood: -148783.238334
EM: Round [93] log likelihood: -148783.237708
EM: Round [94] log likelihood: -148783.237111
EM: Round [95] log likelihood: -148783.236541
EM: Round [96] log likelihood: -148783.235997
EM: Round [97] log likelihood: -148783.235479
EM: Round [98] log likelihood: -148783.234984
EM: Round [99] log likelihood: -148783.234511
EM: Round [100] log likelihood: -148783.234060
EM: Round [101] log likelihood: -148783.233629
EM: Round [102] log likelihood: -148783.233218
EM: Round [103] log likelihood: -148783.232825
EM: Round [104] log likelihood: -148783.232450
EM: Round [105] log likelihood: -148783.232092
EM: Round [106] log likelihood: -148783.231750
EM: Round [107] log likelihood: -148783.231423
EM: Round [108] log likelihood: -148783.231111
EM: Round [109] log likelihood: -148783.230813
EM: Round [110] log likelihood: -148783.230528
EM: Round [111] log likelihood: -148783.230255
EM: Round [112] log likelihood: -148783.229995
EM: Round [113] log likelihood: -148783.229746
EM: Round [114] log likelihood: -148783.229508
EM: Round [115] log likelihood: -148783.229280
EM: Round [116] log likelihood: -148783.229062
EM: Round [117] log likelihood: -148783.228854
EM: Round [118] log likelihood: -148783.228655
EM: Round [119] log likelihood: -148783.228465
EM: Round [120] log likelihood: -148783.228283
EM: Round [121] log likelihood: -148783.228109
EM: Round [122] log likelihood: -148783.227942
EM: Round [123] log likelihood: -148783.227782
EM: Round [124] log likelihood: -148783.227630
EM: Round [125] log likelihood: -148783.227484
EM: Round [126] log likelihood: -148783.227344
EM: Round [127] log likelihood: -148783.227210
EM: Round [128] log likelihood: -148783.227082
EM: Round [129] log likelihood: -148783.226959
EM: Round [130] log likelihood: -148783.226841
EM: Round [131] log likelihood: -148783.226729
EM: Round [132] log likelihood: -148783.226621
EM: Round [133] log likelihood: -148783.226518
EM: Round [134] log likelihood: -148783.226419
EM: Stopping iterations at round 134 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -148747.982264
EM: Round [1] log likelihood: -148686.141228
EM: Round [2] log likelihood: -148663.637388
EM: Round [3] log likelihood: -148653.229320
EM: Round [4] log likelihood: -148647.872984
EM: Round [5] log likelihood: -148644.889016
EM: Round [6] log likelihood: -148643.101547
EM: Round [7] log likelihood: -148641.955802
EM: Round [8] log likelihood: -148641.175539
EM: Round [9] log likelihood: -148640.615937
EM: Round [10] log likelihood: -148640.197081
EM: Round [11] log likelihood: -148639.872604
EM: Round [12] log likelihood: -148639.614266
EM: Round [13] log likelihood: -148639.404061
EM: Round [14] log likelihood: -148639.230014
EM: Round [15] log likelihood: -148639.083849
EM: Round [16] log likelihood: -148638.959657
EM: Round [17] log likelihood: -148638.853092
EM: Round [18] log likelihood: -148638.760882
EM: Round [19] log likelihood: -148638.680508
EM: Round [20] log likelihood: -148638.609999
EM: Round [21] log likelihood: -148638.547791
EM: Round [22] log likelihood: -148638.492622
EM: Round [23] log likelihood: -148638.443466
EM: Round [24] log likelihood: -148638.399481
EM: Round [25] log likelihood: -148638.359967
EM: Round [26] log likelihood: -148638.324340
EM: Round [27] log likelihood: -148638.292110
EM: Round [28] log likelihood: -148638.262861
EM: Round [29] log likelihood: -148638.236239
EM: Round [30] log likelihood: -148638.211941
EM: Round [31] log likelihood: -148638.189707
EM: Round [32] log likelihood: -148638.169313
EM: Round [33] log likelihood: -148638.150564
EM: Round [34] log likelihood: -148638.133290
EM: Round [35] log likelihood: -148638.117343
EM: Round [36] log likelihood: -148638.102594
EM: Round [37] log likelihood: -148638.088928
EM: Round [38] log likelihood: -148638.076244
EM: Round [39] log likelihood: -148638.064454
EM: Round [40] log likelihood: -148638.053477
EM: Round [41] log likelihood: -148638.043244
EM: Round [42] log likelihood: -148638.033692
EM: Round [43] log likelihood: -148638.024763
EM: Round [44] log likelihood: -148638.016409
EM: Round [45] log likelihood: -148638.008583
EM: Round [46] log likelihood: -148638.001244
EM: Round [47] log likelihood: -148637.994355
EM: Round [48] log likelihood: -148637.987882
EM: Round [49] log likelihood: -148637.981796
EM: Round [50] log likelihood: -148637.976068
EM: Round [51] log likelihood: -148637.970673
EM: Round [52] log likelihood: -148637.965589
EM: Round [53] log likelihood: -148637.960793
EM: Round [54] log likelihood: -148637.956266
EM: Round [55] log likelihood: -148637.951992
EM: Round [56] log likelihood: -148637.947953
EM: Round [57] log likelihood: -148637.944134
EM: Round [58] log likelihood: -148637.940522
EM: Round [59] log likelihood: -148637.937104
EM: Round [60] log likelihood: -148637.933867
EM: Round [61] log likelihood: -148637.930801
EM: Round [62] log likelihood: -148637.927896
EM: Round [63] log likelihood: -148637.925141
EM: Round [64] log likelihood: -148637.922529
EM: Round [65] log likelihood: -148637.920051
EM: Round [66] log likelihood: -148637.917699
EM: Round [67] log likelihood: -148637.915467
EM: Round [68] log likelihood: -148637.913347
EM: Round [69] log likelihood: -148637.911333
EM: Round [70] log likelihood: -148637.909420
EM: Round [71] log likelihood: -148637.907601
EM: Round [72] log likelihood: -148637.905872
EM: Round [73] log likelihood: -148637.904228
EM: Round [74] log likelihood: -148637.902665
EM: Round [75] log likelihood: -148637.901178
EM: Round [76] log likelihood: -148637.899763
EM: Round [77] log likelihood: -148637.898416
EM: Round [78] log likelihood: -148637.897134
EM: Round [79] log likelihood: -148637.895914
EM: Round [80] log likelihood: -148637.894751
EM: Round [81] log likelihood: -148637.893645
EM: Round [82] log likelihood: -148637.892590
EM: Round [83] log likelihood: -148637.891586
EM: Round [84] log likelihood: -148637.890629
EM: Round [85] log likelihood: -148637.889717
EM: Round [86] log likelihood: -148637.888848
EM: Round [87] log likelihood: -148637.888019
EM: Round [88] log likelihood: -148637.887229
EM: Round [89] log likelihood: -148637.886476
EM: Round [90] log likelihood: -148637.885757
EM: Round [91] log likelihood: -148637.885072
EM: Round [92] log likelihood: -148637.884419
EM: Round [93] log likelihood: -148637.883795
EM: Round [94] log likelihood: -148637.883200
EM: Round [95] log likelihood: -148637.882632
EM: Round [96] log likelihood: -148637.882091
EM: Round [97] log likelihood: -148637.881574
EM: Round [98] log likelihood: -148637.881080
EM: Round [99] log likelihood: -148637.880609
EM: Round [100] log likelihood: -148637.880159
EM: Round [101] log likelihood: -148637.879730
EM: Round [102] log likelihood: -148637.879319
EM: Round [103] log likelihood: -148637.878928
EM: Round [104] log likelihood: -148637.878554
EM: Round [105] log likelihood: -148637.878196
EM: Round [106] log likelihood: -148637.877855
EM: Round [107] log likelihood: -148637.877528
EM: Round [108] log likelihood: -148637.877217
EM: Round [109] log likelihood: -148637.876919
EM: Round [110] log likelihood: -148637.876634
EM: Round [111] log likelihood: -148637.876362
EM: Round [112] log likelihood: -148637.876102
EM: Round [113] log likelihood: -148637.875853
EM: Round [114] log likelihood: -148637.875615
EM: Round [115] log likelihood: -148637.875388
EM: Round [116] log likelihood: -148637.875171
EM: Round [117] log likelihood: -148637.874963
EM: Round [118] log likelihood: -148637.874764
EM: Round [119] log likelihood: -148637.874574
EM: Round [120] log likelihood: -148637.874392
EM: Round [121] log likelihood: -148637.874218
EM: Round [122] log likelihood: -148637.874051
EM: Round [123] log likelihood: -148637.873892
EM: Round [124] log likelihood: -148637.873739
EM: Round [125] log likelihood: -148637.873593
EM: Round [126] log likelihood: -148637.873453
EM: Round [127] log likelihood: -148637.873319
EM: Round [128] log likelihood: -148637.873191
EM: Round [129] log likelihood: -148637.873069
EM: Round [130] log likelihood: -148637.872951
EM: Round [131] log likelihood: -148637.872839
EM: Round [132] log likelihood: -148637.872731
EM: Round [133] log likelihood: -148637.872628
EM: Round [134] log likelihood: -148637.872529
EM: Stopping iterations at round 134 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.UqsmFX1wUd/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.UqsmFX1wUd/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.UqsmFX1wUd/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 110441127 > /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.UqsmFX1wUd/ctat_genome_lib_build_dir > /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.UqsmFX1wUd/ctat_genome_lib_build_dir --annotate /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.UqsmFX1wUd/ctat_genome_lib_build_dir
-done, see /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.UqsmFX1wUd/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 1499, filtered: 9423)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.UqsmFX1wUd/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.UqsmFX1wUd/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000180747.15]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000175302.5]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000203413.3]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000175302.5]
WARNING, no entry stored in dbm for [ENSG00000281896.1]
WARNING, no entry stored in dbm for [ENSG00000262801.6]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000286907.1]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000243753.5]
WARNING, no entry stored in dbm for [ENSG00000181126.13]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000234715.2]
WARNING, no entry stored in dbm for [ENSG00000205534.6]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000128438.10]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000287411.1]
WARNING, no entry stored in dbm for [ENSG00000230559.1]
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WARNING, no entry stored in dbm for [ENSG00000266504.1]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
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WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000228252.9]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000237640.1]
WARNING, no entry stored in dbm for [ENSG00000265936.1]
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WARNING, no entry stored in dbm for [ENSG00000225264.3]
WARNING, no entry stored in dbm for [ENSG00000237400.1]
WARNING, no entry stored in dbm for [ENSG00000237004.4]
WARNING, no entry stored in dbm for [ENSG00000277977.1]
WARNING, no entry stored in dbm for [ENSG00000268163.1]
WARNING, no entry stored in dbm for [ENSG00000216824.2]
WARNING, no entry stored in dbm for [ENSG00000287985.1]
WARNING, no entry stored in dbm for [ENSG00000225594.1]
WARNING, no entry stored in dbm for [ENSG00000286860.1]
WARNING, no entry stored in dbm for [ENSG00000185986.12]
WARNING, no entry stored in dbm for [ENSG00000225178.5]
WARNING, no entry stored in dbm for [ENSG00000228010.6]
WARNING, no entry stored in dbm for [ENSG00000267696.6]
WARNING, no entry stored in dbm for [ENSG00000287277.1]
WARNING, no entry stored in dbm for [ENSG00000257267.3]
WARNING, no entry stored in dbm for [ENSG00000237426.1]
WARNING, no entry stored in dbm for [ENSG00000264014.1]
WARNING, no entry stored in dbm for [ENSG00000236829.9]
WARNING, no entry stored in dbm for [ENSG00000207416.1]
WARNING, no entry stored in dbm for [ENSG00000271142.1]
WARNING, no entry stored in dbm for [ENSG00000234228.1]
WARNING, no entry stored in dbm for [ENSG00000228022.6]
WARNING, no entry stored in dbm for [ENSG00000280434.1]
WARNING, no entry stored in dbm for [ENSG00000222449.1]
WARNING, no entry stored in dbm for [ENSG00000185596.16]
WARNING, no entry stored in dbm for [ENSG00000185596.16]
WARNING, no entry stored in dbm for [ENSG00000225292.2]
WARNING, no entry stored in dbm for [ENSG00000205754.12]
WARNING, no entry stored in dbm for [ENSG00000249700.9]
WARNING, no entry stored in dbm for [ENSG00000238045.9]
WARNING, no entry stored in dbm for [ENSG00000200156.1]
WARNING, no entry stored in dbm for [ENSG00000200972.1]
WARNING, no entry stored in dbm for [ENSG00000199568.1]
WARNING, no entry stored in dbm for [ENSG00000237125.11]
WARNING, no entry stored in dbm for [ENSG00000265939.1]
WARNING, no entry stored in dbm for [ENSG00000267506.5]
WARNING, no entry stored in dbm for [ENSG00000223544.1]
WARNING, no entry stored in dbm for [ENSG00000234996.4]
WARNING, no entry stored in dbm for [ENSG00000286031.1]
WARNING, no entry stored in dbm for [ENSG00000264538.6]
WARNING, no entry stored in dbm for [ENSG00000249859.12]
WARNING, no entry stored in dbm for [ENSG00000214559.3]
WARNING, no entry stored in dbm for [ENSG00000230513.2]
WARNING, no entry stored in dbm for [ENSG00000257337.7]
WARNING, no entry stored in dbm for [ENSG00000240535.8]
WARNING, no entry stored in dbm for [ENSG00000234369.1]
WARNING, no entry stored in dbm for [ENSG00000259977.1]
WARNING, no entry stored in dbm for [ENSG00000200156.1]
WARNING, no entry stored in dbm for [ENSG00000266179.2]
WARNING, no entry stored in dbm for [ENSG00000231607.13]
WARNING, no entry stored in dbm for [ENSG00000239827.8]
WARNING, no entry stored in dbm for [ENSG00000229180.7]
WARNING, no entry stored in dbm for [ENSG00000224353.2]
WARNING, no entry stored in dbm for [ENSG00000263821.1]
WARNING, no entry stored in dbm for [ENSG00000247498.10]
WARNING, no entry stored in dbm for [ENSG00000275432.1]
WARNING, no entry stored in dbm for [ENSG00000246084.5]
WARNING, no entry stored in dbm for [ENSG00000212553.1]
WARNING, no entry stored in dbm for [ENSG00000175061.18]
WARNING, no entry stored in dbm for [ENSG00000224078.15]
WARNING, no entry stored in dbm for [ENSG00000271795.1]
WARNING, no entry stored in dbm for [ENSG00000236548.2]
WARNING, no entry stored in dbm for [ENSG00000285051.2]
WARNING, no entry stored in dbm for [ENSG00000235726.7]
WARNING, no entry stored in dbm for [ENSG00000200393.1]
WARNING, no entry stored in dbm for [ENSG00000223265.1]
WARNING, no entry stored in dbm for [ENSG00000201744.1]
WARNING, no entry stored in dbm for [ENSG00000200484.1]
WARNING, no entry stored in dbm for [ENSG00000286953.1]
WARNING, no entry stored in dbm for [ENSG00000213645.2]
WARNING, no entry stored in dbm for [ENSG00000213430.6]
WARNING, no entry stored in dbm for [ENSG00000286332.1]
WARNING, no entry stored in dbm for [ENSG00000185485.14]
WARNING, no entry stored in dbm for [ENSG00000279300.1]
WARNING, no entry stored in dbm for [ENSG00000225953.3]
WARNING, no entry stored in dbm for [ENSG00000288091.1]
WARNING, no entry stored in dbm for [ENSG00000240590.1]
WARNING, no entry stored in dbm for [ENSG00000230116.1]
WARNING, no entry stored in dbm for [ENSG00000216639.1]
WARNING, no entry stored in dbm for [ENSG00000240509.1]
WARNING, no entry stored in dbm for [ENSG00000229519.2]
WARNING, no entry stored in dbm for [ENSG00000241157.1]
WARNING, no entry stored in dbm for [ENSG00000226407.1]
WARNING, no entry stored in dbm for [ENSG00000238015.2]
WARNING, no entry stored in dbm for [ENSG00000235670.1]
WARNING, no entry stored in dbm for [ENSG00000238180.1]
WARNING, no entry stored in dbm for [ENSG00000231322.5]
WARNING, no entry stored in dbm for [ENSG00000204650.14]
WARNING, no entry stored in dbm for [ENSG00000276027.1]
WARNING, no entry stored in dbm for [ENSG00000243562.3]
WARNING, no entry stored in dbm for [ENSG00000207269.1]
WARNING, no entry stored in dbm for [ENSG00000201201.1]
WARNING, no entry stored in dbm for [ENSG00000200475.1]
WARNING, no entry stored in dbm for [ENSG00000222397.1]
WARNING, no entry stored in dbm for [ENSG00000222107.1]
WARNING, no entry stored in dbm for [ENSG00000200783.1]
WARNING, no entry stored in dbm for [ENSG00000267112.1]
WARNING, no entry stored in dbm for [ENSG00000278834.1]
WARNING, no entry stored in dbm for [ENSG00000286563.1]
WARNING, no entry stored in dbm for [ENSG00000223704.2]
WARNING, no entry stored in dbm for [ENSG00000248223.1]
WARNING, no entry stored in dbm for [ENSG00000259343.7]
WARNING, no entry stored in dbm for [ENSG00000251842.1]
WARNING, no entry stored in dbm for [ENSG00000201852.1]
WARNING, no entry stored in dbm for [ENSG00000213326.4]
WARNING, no entry stored in dbm for [ENSG00000257599.3]
WARNING, no entry stored in dbm for [ENSG00000227725.3]
WARNING, no entry stored in dbm for [ENSG00000283422.1]
WARNING, no entry stored in dbm for [ENSG00000257621.8]
WARNING, no entry stored in dbm for [ENSG00000276550.4]
WARNING, no entry stored in dbm for [ENSG00000215158.9]
WARNING, no entry stored in dbm for [ENSG00000228221.6]
WARNING, no entry stored in dbm for [ENSG00000204434.6]
WARNING, no entry stored in dbm for [ENSG00000230590.11]
WARNING, no entry stored in dbm for [ENSG00000251364.7]
WARNING, no entry stored in dbm for [ENSG00000244257.5]
WARNING, no entry stored in dbm for [ENSG00000236015.1]
WARNING, no entry stored in dbm for [ENSG00000248290.1]
WARNING, no entry stored in dbm for [ENSG00000237211.2]
WARNING, no entry stored in dbm for [ENSG00000236494.2]
WARNING, no entry stored in dbm for [ENSG00000179818.14]
WARNING, no entry stored in dbm for [ENSG00000200434.1]
WARNING, no entry stored in dbm for [ENSG00000277739.1]
WARNING, no entry stored in dbm for [ENSG00000287405.1]
WARNING, no entry stored in dbm for [ENSG00000229539.1]
WARNING, no entry stored in dbm for [ENSG00000232293.2]
WARNING, no entry stored in dbm for [ENSG00000184669.9]
WARNING, no entry stored in dbm for [ENSG00000230411.1]
WARNING, no entry stored in dbm for [ENSG00000262728.6]
WARNING, no entry stored in dbm for [ENSG00000226328.7]
WARNING, no entry stored in dbm for [ENSG00000279762.3]
WARNING, no entry stored in dbm for [ENSG00000249353.2]
WARNING, no entry stored in dbm for [ENSG00000237484.6]
WARNING, no entry stored in dbm for [ENSG00000236526.1]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000232715.1]
WARNING, no entry stored in dbm for [ENSG00000198496.12]
WARNING, no entry stored in dbm for [ENSG00000179571.10]
WARNING, no entry stored in dbm for [ENSG00000205449.11]
WARNING, no entry stored in dbm for [ENSG00000249448.1]
WARNING, no entry stored in dbm for [ENSG00000225084.1]
WARNING, no entry stored in dbm for [ENSG00000249229.2]
WARNING, no entry stored in dbm for [ENSG00000271094.1]
WARNING, no entry stored in dbm for [ENSG00000261460.1]
WARNING, no entry stored in dbm for [ENSG00000233006.8]
WARNING, no entry stored in dbm for [ENSG00000229989.4]
WARNING, no entry stored in dbm for [ENSG00000283568.1]
WARNING, no entry stored in dbm for [ENSG00000242326.1]
WARNING, no entry stored in dbm for [ENSG00000230590.11]
WARNING, no entry stored in dbm for [ENSG00000260388.2]
WARNING, no entry stored in dbm for [ENSG00000228536.3]
WARNING, no entry stored in dbm for [ENSG00000234509.1]
WARNING, no entry stored in dbm for [ENSG00000286021.2]
WARNING, no entry stored in dbm for [ENSG00000232527.8]
WARNING, no entry stored in dbm for [ENSG00000272779.1]
WARNING, no entry stored in dbm for [ENSG00000258979.3]
WARNING, no entry stored in dbm for [ENSG00000260420.3]
WARNING, no entry stored in dbm for [ENSG00000223783.1]
WARNING, no entry stored in dbm for [ENSG00000261008.7]
WARNING, no entry stored in dbm for [ENSG00000198685.4]
WARNING, no entry stored in dbm for [ENSG00000280587.1]
WARNING, no entry stored in dbm for [ENSG00000217325.2]
WARNING, no entry stored in dbm for [ENSG00000247157.7]
WARNING, no entry stored in dbm for [ENSG00000228794.10]
WARNING, no entry stored in dbm for [ENSG00000224559.2]
WARNING, no entry stored in dbm for [ENSG00000235687.9]
WARNING, no entry stored in dbm for [ENSG00000235687.9]
WARNING, no entry stored in dbm for [ENSG00000235687.9]
WARNING, no entry stored in dbm for [ENSG00000225269.3]
WARNING, no entry stored in dbm for [ENSG00000232685.5]
WARNING, no entry stored in dbm for [ENSG00000235137.2]
WARNING, no entry stored in dbm for [ENSG00000165121.11]
WARNING, no entry stored in dbm for [ENSG00000273851.1]
WARNING, no entry stored in dbm for [ENSG00000267690.1]
WARNING, no entry stored in dbm for [ENSG00000280118.3]
WARNING, no entry stored in dbm for [ENSG00000254291.1]
WARNING, no entry stored in dbm for [ENSG00000256742.1]
WARNING, no entry stored in dbm for [ENSG00000184612.8]
WARNING, no entry stored in dbm for [ENSG00000229119.3]
WARNING, no entry stored in dbm for [ENSG00000263327.6]
WARNING, no entry stored in dbm for [ENSG00000234996.4]
WARNING, no entry stored in dbm for [ENSG00000267575.7]
WARNING, no entry stored in dbm for [ENSG00000236679.2]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000280809.4]
WARNING, no entry stored in dbm for [ENSG00000286116.1]
WARNING, no entry stored in dbm for [ENSG00000285219.2]
WARNING, no entry stored in dbm for [ENSG00000233539.5]
WARNING, no entry stored in dbm for [ENSG00000205940.8]
WARNING, no entry stored in dbm for [ENSG00000231434.1]
WARNING, no entry stored in dbm for [ENSG00000251557.2]
WARNING, no entry stored in dbm for [ENSG00000234052.2]
WARNING, no entry stored in dbm for [ENSG00000229046.1]
WARNING, no entry stored in dbm for [ENSG00000256557.1]
WARNING, no entry stored in dbm for [ENSG00000253770.1]
WARNING, no entry stored in dbm for [ENSG00000243753.5]
WARNING, no entry stored in dbm for [ENSG00000237398.1]
WARNING, no entry stored in dbm for [ENSG00000279066.1]
WARNING, no entry stored in dbm for [ENSG00000196295.12]
WARNING, no entry stored in dbm for [ENSG00000275374.1]
WARNING, no entry stored in dbm for [ENSG00000183666.17]
WARNING, no entry stored in dbm for [ENSG00000230876.8]
WARNING, no entry stored in dbm for [ENSG00000236526.1]
WARNING, no entry stored in dbm for [ENSG00000232098.3]
WARNING, no entry stored in dbm for [ENSG00000215043.2]
WARNING, no entry stored in dbm for [ENSG00000278175.4]
WARNING, no entry stored in dbm for [ENSG00000269540.1]
WARNING, no entry stored in dbm for [ENSG00000269889.1]
WARNING, no entry stored in dbm for [ENSG00000275374.1]
WARNING, no entry stored in dbm for [ENSG00000185390.2]
WARNING, no entry stored in dbm for [ENSG00000255126.1]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000282508.2]
WARNING, no entry stored in dbm for [ENSG00000285867.1]
WARNING, no entry stored in dbm for [ENSG00000285867.1]
WARNING, no entry stored in dbm for [ENSG00000267575.7]
WARNING, no entry stored in dbm for [ENSG00000250227.1]
WARNING, no entry stored in dbm for [ENSG00000283709.1]
WARNING, no entry stored in dbm for [ENSG00000283709.1]
WARNING, no entry stored in dbm for [ENSG00000214900.11]
WARNING, no entry stored in dbm for [ENSG00000287998.1]
WARNING, no entry stored in dbm for [ENSG00000224032.7]
WARNING, no entry stored in dbm for [ENSG00000204650.14]
WARNING, no entry stored in dbm for [ENSG00000225022.1]
WARNING, no entry stored in dbm for [ENSG00000267336.1]
WARNING, no entry stored in dbm for [ENSG00000249421.2]
WARNING, no entry stored in dbm for [ENSG00000279696.1]
WARNING, no entry stored in dbm for [ENSG00000280739.3]
WARNING, no entry stored in dbm for [ENSG00000226995.9]
WARNING, no entry stored in dbm for [ENSG00000243701.7]
WARNING, no entry stored in dbm for [ENSG00000186704.9]
WARNING, no entry stored in dbm for [ENSG00000236680.1]
WARNING, no entry stored in dbm for [ENSG00000231990.2]
WARNING, no entry stored in dbm for [ENSG00000234714.1]
WARNING, no entry stored in dbm for [ENSG00000279198.1]
WARNING, no entry stored in dbm for [ENSG00000267586.7]
WARNING, no entry stored in dbm for [ENSG00000287621.1]
WARNING, no entry stored in dbm for [ENSG00000231890.8]
WARNING, no entry stored in dbm for [ENSG00000226950.8]
WARNING, no entry stored in dbm for [ENSG00000154198.14]
WARNING, no entry stored in dbm for [ENSG00000269821.1]
WARNING, no entry stored in dbm for [ENSG00000270424.1]
WARNING, no entry stored in dbm for [ENSG00000276077.4]
WARNING, no entry stored in dbm for [ENSG00000218428.1]
WARNING, no entry stored in dbm for [ENSG00000174407.13]
WARNING, no entry stored in dbm for [ENSG00000263955.2]
WARNING, no entry stored in dbm for [ENSG00000236526.1]
WARNING, no entry stored in dbm for [ENSG00000254194.5]
WARNING, no entry stored in dbm for [ENSG00000197182.14]
WARNING, no entry stored in dbm for [ENSG00000261801.6]
WARNING, no entry stored in dbm for [ENSG00000266373.1]
WARNING, no entry stored in dbm for [ENSG00000254963.1]
WARNING, no entry stored in dbm for [ENSG00000258562.2]
WARNING, no entry stored in dbm for [ENSG00000269821.1]
WARNING, no entry stored in dbm for [ENSG00000259363.6]
WARNING, no entry stored in dbm for [ENSG00000205853.12]
WARNING, no entry stored in dbm for [ENSG00000249785.3]
WARNING, no entry stored in dbm for [ENSG00000251264.1]
WARNING, no entry stored in dbm for [ENSG00000236526.1]
WARNING, no entry stored in dbm for [ENSG00000267623.3]
WARNING, no entry stored in dbm for [ENSG00000176243.9]
WARNING, no entry stored in dbm for [ENSG00000242299.1]
WARNING, no entry stored in dbm for [ENSG00000222449.1]
WARNING, no entry stored in dbm for [ENSG00000188511.12]
WARNING, no entry stored in dbm for [ENSG00000239556.4]
WARNING, no entry stored in dbm for [ENSG00000279006.1]
WARNING, no entry stored in dbm for [ENSG00000278301.1]
WARNING, no entry stored in dbm for [ENSG00000280927.1]
WARNING, no entry stored in dbm for [ENSG00000254635.6]
WARNING, no entry stored in dbm for [ENSG00000197595.4]
WARNING, no entry stored in dbm for [ENSG00000251129.2]
WARNING, no entry stored in dbm for [ENSG00000261578.1]
WARNING, no entry stored in dbm for [ENSG00000267533.1]
WARNING, no entry stored in dbm for [ENSG00000234751.1]
WARNING, no entry stored in dbm for [ENSG00000267032.1]
WARNING, no entry stored in dbm for [ENSG00000205622.11]
WARNING, no entry stored in dbm for [ENSG00000247137.9]
WARNING, no entry stored in dbm for [ENSG00000260209.1]
WARNING, no entry stored in dbm for [ENSG00000256035.1]
WARNING, no entry stored in dbm for [ENSG00000230551.4]
WARNING, no entry stored in dbm for [ENSG00000237094.12]
WARNING, no entry stored in dbm for [ENSG00000233013.10]
WARNING, no entry stored in dbm for [ENSG00000230021.10]
WARNING, no entry stored in dbm for [ENSG00000285799.1]
WARNING, no entry stored in dbm for [ENSG00000254741.1]
WARNING, no entry stored in dbm for [ENSG00000232576.2]
WARNING, no entry stored in dbm for [ENSG00000270780.1]
WARNING, no entry stored in dbm for [ENSG00000234589.4]
WARNING, no entry stored in dbm for [ENSG00000227399.1]
WARNING, no entry stored in dbm for [ENSG00000259873.1]
WARNING, no entry stored in dbm for [ENSG00000227619.3]
WARNING, no entry stored in dbm for [ENSG00000227619.3]
WARNING, no entry stored in dbm for [ENSG00000235749.3]
WARNING, no entry stored in dbm for [ENSG00000234156.3]
WARNING, no entry stored in dbm for [ENSG00000223528.7]
WARNING, no entry stored in dbm for [ENSG00000286215.1]
WARNING, no entry stored in dbm for [ENSG00000270066.3]
WARNING, no entry stored in dbm for [ENSG00000217488.2]
WARNING, no entry stored in dbm for [ENSG00000236358.1]
WARNING, no entry stored in dbm for [ENSG00000279706.1]
WARNING, no entry stored in dbm for [ENSG00000213430.6]
WARNING, no entry stored in dbm for [ENSG00000225106.1]
WARNING, no entry stored in dbm for [ENSG00000258377.1]
WARNING, no entry stored in dbm for [ENSG00000220685.3]
WARNING, no entry stored in dbm for [ENSG00000276805.2]
WARNING, no entry stored in dbm for [ENSG00000280828.1]
WARNING, no entry stored in dbm for [ENSG00000260708.1]
WARNING, no entry stored in dbm for [ENSG00000287562.1]
WARNING, no entry stored in dbm for [ENSG00000227486.2]
WARNING, no entry stored in dbm for [ENSG00000260920.2]
WARNING, no entry stored in dbm for [ENSG00000277022.1]
WARNING, no entry stored in dbm for [ENSG00000277315.1]
WARNING, no entry stored in dbm for [ENSG00000285646.2]
WARNING, no entry stored in dbm for [ENSG00000272977.1]
WARNING, no entry stored in dbm for [ENSG00000261595.1]
WARNING, no entry stored in dbm for [ENSG00000230869.1]
WARNING, no entry stored in dbm for [ENSG00000230869.1]
WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000248801.7]
WARNING, no entry stored in dbm for [ENSG00000221676.1]
WARNING, no entry stored in dbm for [ENSG00000167494.9]
WARNING, no entry stored in dbm for [ENSG00000268505.1]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000200101.1]
WARNING, no entry stored in dbm for [ENSG00000207291.1]
WARNING, no entry stored in dbm for [ENSG00000234478.1]
WARNING, no entry stored in dbm for [ENSG00000267838.2]
WARNING, no entry stored in dbm for [ENSG00000274265.5]
WARNING, no entry stored in dbm for [ENSG00000235181.1]
WARNING, no entry stored in dbm for [ENSG00000276216.1]
WARNING, no entry stored in dbm for [ENSG00000225370.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000239521.9]
WARNING, no entry stored in dbm for [ENSG00000215158.9]
WARNING, no entry stored in dbm for [ENSG00000238035.8]
WARNING, no entry stored in dbm for [ENSG00000261719.1]
WARNING, no entry stored in dbm for [ENSG00000286473.1]
WARNING, no entry stored in dbm for [ENSG00000283345.1]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000284675.1]
WARNING, no entry stored in dbm for [ENSG00000249413.2]
WARNING, no entry stored in dbm for [ENSG00000285922.1]
WARNING, no entry stored in dbm for [ENSG00000224479.6]
WARNING, no entry stored in dbm for [ENSG00000251314.2]
WARNING, no entry stored in dbm for [ENSG00000284648.1]
WARNING, no entry stored in dbm for [ENSG00000242759.8]
WARNING, no entry stored in dbm for [ENSG00000288620.1]
WARNING, no entry stored in dbm for [ENSG00000248126.1]
WARNING, no entry stored in dbm for [ENSG00000240519.1]
WARNING, no entry stored in dbm for [ENSG00000265750.1]
WARNING, no entry stored in dbm for [ENSG00000250643.1]
WARNING, no entry stored in dbm for [ENSG00000240207.7]
WARNING, no entry stored in dbm for [ENSG00000285679.2]
WARNING, no entry stored in dbm for [ENSG00000227157.2]
WARNING, no entry stored in dbm for [ENSG00000283393.1]
WARNING, no entry stored in dbm for [ENSG00000279421.1]
WARNING, no entry stored in dbm for [ENSG00000242613.1]
WARNING, no entry stored in dbm for [ENSG00000236958.1]
WARNING, no entry stored in dbm for [ENSG00000234337.4]
WARNING, no entry stored in dbm for [ENSG00000188002.10]
WARNING, no entry stored in dbm for [ENSG00000188002.10]
WARNING, no entry stored in dbm for [ENSG00000188002.10]
WARNING, no entry stored in dbm for [ENSG00000276332.1]
WARNING, no entry stored in dbm for [ENSG00000262262.1]
WARNING, no entry stored in dbm for [ENSG00000254485.5]
WARNING, no entry stored in dbm for [ENSG00000259354.5]
WARNING, no entry stored in dbm for [ENSG00000267033.1]
WARNING, no entry stored in dbm for [ENSG00000269032.1]
WARNING, no entry stored in dbm for [ENSG00000223508.5]
WARNING, no entry stored in dbm for [ENSG00000243744.2]
WARNING, no entry stored in dbm for [ENSG00000229700.1]
WARNING, no entry stored in dbm for [ENSG00000232386.9]
WARNING, no entry stored in dbm for [ENSG00000224789.1]
WARNING, no entry stored in dbm for [ENSG00000258017.2]
WARNING, no entry stored in dbm for [ENSG00000269439.6]
WARNING, no entry stored in dbm for [ENSG00000257696.1]
WARNING, no entry stored in dbm for [ENSG00000282890.1]
WARNING, no entry stored in dbm for [ENSG00000068781.21]
WARNING, no entry stored in dbm for [ENSG00000231794.5]
WARNING, no entry stored in dbm for [ENSG00000216895.9]
WARNING, no entry stored in dbm for [ENSG00000176593.8]
WARNING, no entry stored in dbm for [ENSG00000249476.2]
WARNING, no entry stored in dbm for [ENSG00000231255.1]
WARNING, no entry stored in dbm for [ENSG00000239556.4]
WARNING, no entry stored in dbm for [ENSG00000239556.4]
WARNING, no entry stored in dbm for [ENSG00000241057.2]
WARNING, no entry stored in dbm for [ENSG00000239791.2]
WARNING, no entry stored in dbm for [ENSG00000287932.1]
WARNING, no entry stored in dbm for [ENSG00000249680.2]


	* STAR-Fusion complete.  See output: /tmp/nxf.UqsmFX1wUd/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)