Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/465b1127a57e0c5a7890d88dbc1e6a/aih-tih-sc-13a2f6-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/013786bf60e48795a82bf865049234/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/60bd492ae36944fcfa1e895afa736e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/60bd492ae36944fcfa1e895afa736e/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/28ab5e6267b7dc6a6f85aaca6d24cb/aih-tih-sc-13a2f6-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 99315325
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-13a2f6-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	99315325
Known Splicing Events:	98274535
Partial Novel Splicing Events:	458765
Novel Splicing Events:	523887
Filtered Splicing Events:	58138

Total splicing  Junctions:	270494
Known Splicing Junctions:	201518
Partial Novel Splicing Junctions:	38944
Novel Splicing Junctions:	30032

===================================================================
Create BED file ...
Create Interact file ...