Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/359c8b960e45652f48b6be20cbb7f1/aih-tih-sc-1ba302-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/013786bf60e48795a82bf865049234/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/bef7676d55d6e5e5c07d2dd080b74d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/ffd79a928055941e334b80b2b6d101/aih-tih-sc-1ba302-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/bef7676d55d6e5e5c07d2dd080b74d/.command.run
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-1ba302-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (17981077) splicing reads. 263075 splicing junctions. 186488 known splicing junctions. 76587 novel splicing junctions.
sampling 10% (35962155) splicing reads. 320523 splicing junctions. 199400 known splicing junctions. 121123 novel splicing junctions.
sampling 15% (53943233) splicing reads. 360432 splicing junctions. 206304 known splicing junctions. 154128 novel splicing junctions.
sampling 20% (71924311) splicing reads. 391179 splicing junctions. 210790 known splicing junctions. 180389 novel splicing junctions.
sampling 25% (89905389) splicing reads. 416539 splicing junctions. 214127 known splicing junctions. 202412 novel splicing junctions.
sampling 30% (107886466) splicing reads. 437834 splicing junctions. 216700 known splicing junctions. 221134 novel splicing junctions.
sampling 35% (125867544) splicing reads. 455568 splicing junctions. 218603 known splicing junctions. 236965 novel splicing junctions.
sampling 40% (143848622) splicing reads. 470798 splicing junctions. 220157 known splicing junctions. 250641 novel splicing junctions.
sampling 45% (161829700) splicing reads. 484164 splicing junctions. 221557 known splicing junctions. 262607 novel splicing junctions.
sampling 50% (179810778) splicing reads. 495905 splicing junctions. 222669 known splicing junctions. 273236 novel splicing junctions.
sampling 55% (197791855) splicing reads. 506212 splicing junctions. 223732 known splicing junctions. 282480 novel splicing junctions.
sampling 60% (215772933) splicing reads. 515237 splicing junctions. 224561 known splicing junctions. 290676 novel splicing junctions.
sampling 65% (233754011) splicing reads. 523333 splicing junctions. 225287 known splicing junctions. 298046 novel splicing junctions.
sampling 70% (251735089) splicing reads. 530253 splicing junctions. 225926 known splicing junctions. 304327 novel splicing junctions.
sampling 75% (269716167) splicing reads. 536320 splicing junctions. 226427 known splicing junctions. 309893 novel splicing junctions.
sampling 80% (287697244) splicing reads. 541613 splicing junctions. 226905 known splicing junctions. 314708 novel splicing junctions.
sampling 85% (305678322) splicing reads. 546145 splicing junctions. 227270 known splicing junctions. 318875 novel splicing junctions.
sampling 90% (323659400) splicing reads. 549899 splicing junctions. 227573 known splicing junctions. 322326 novel splicing junctions.
sampling 95% (341640478) splicing reads. 553113 splicing junctions. 227856 known splicing junctions. 325257 novel splicing junctions.
sampling 100% (359621556) splicing reads. 555726 splicing junctions. 228070 known splicing junctions. 327656 novel splicing junctions.
null device 
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