Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/19f9cdc5039197c80769c04f80713a/aih-tih-sc-a03f86-R1_B23WHYVLT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-8900cb43-4dca-49ac-a290-1d176a2e0012/bb/b9dd0d6df869a3d0edd9f161adc899/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/49719d033784a70415464e0936c152/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/a9aa802bd1a9c31d638ddb7c386232/aih-tih-sc-a03f86-R1_B23WHYVLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/49719d033784a70415464e0936c152/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
FSIP1--AC013652.1
starfusion
arriba
COL1A1--SLC45A4
starfusion
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
TVP23C--CDRT4
arriba
PCDHGA5--PCDHGC5
arriba
PCDHGA5--PCDHGA10
arriba
PCDHGA5--PCDHGA8
arriba
PCDHGA5--PCDHGC3
arriba
PCDHGA5--PCDHGC4
arriba
STX16--NPEPL1
arriba
PCDHGA5--PCDHGB7
arriba
PCDHGA5--PCDHGA12
arriba
PCDHGA5--PCDHGA11
arriba
PCDHGA5--PCDHGB6
arriba
PCDHGA5--PCDHGA9
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGA4--PCDHGC5
arriba
PCDHGA4--PCDHGA10
arriba
PCDHGA4--PCDHGA8
arriba
PCDHGA4--PCDHGC3
arriba
PCDHGA4--PCDHGC4
arriba
PCDHGA4--PCDHGB7
arriba
PCDHGA4--PCDHGA12
arriba
PCDHGA4--PCDHGA11
arriba
PCDHGA4--PCDHGB6
arriba
PCDHGA4--PCDHGA9
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHA13
arriba
AC092807.3--DDAH1
arriba
MTHFD1--WHRN
arriba
MTHFD1--AL160275.2
arriba
KLRC4--KLRK1
arriba
0%| | 0/43 [00:00<?, ?it/s]
Processing FSIP1--AC013652.1: 0%| | 0/43 [00:00<?, ?it/s]
Processing FSIP1--AC013652.1: 2%|▏ | 1/43 [00:00<00:04, 8.59it/s]
Processing COL1A1--SLC45A4: 2%|▏ | 1/43 [00:00<00:04, 8.59it/s]
Processing COL1A1--SLC45A4: 5%|▍ | 2/43 [00:00<00:04, 8.92it/s]
Processing TLK2P1--AC110079.1: 5%|▍ | 2/43 [00:00<00:04, 8.92it/s]
Processing TLK2P1--AC110079.1: 7%|▋ | 3/43 [00:00<00:04, 9.03it/s]
Processing TLK2--AC240565.1: 7%|▋ | 3/43 [00:00<00:04, 9.03it/s]
Processing TLK2--AC240565.1: 9%|▉ | 4/43 [00:00<00:04, 9.09it/s]
Processing TVP23C--CDRT4: 9%|▉ | 4/43 [00:00<00:04, 9.09it/s]
Processing TVP23C--CDRT4: 12%|█▏ | 5/43 [00:00<00:04, 9.11it/s]
Processing PCDHGA5--PCDHGC5: 12%|█▏ | 5/43 [00:00<00:04, 9.11it/s]
Processing PCDHGA5--PCDHGC5: 14%|█▍ | 6/43 [00:00<00:04, 9.13it/s]
Processing PCDHGA5--PCDHGA10: 14%|█▍ | 6/43 [00:00<00:04, 9.13it/s]
Processing PCDHGA5--PCDHGA10: 16%|█▋ | 7/43 [00:00<00:03, 9.14it/s]
Processing PCDHGA5--PCDHGA8: 16%|█▋ | 7/43 [00:00<00:03, 9.14it/s]
Processing PCDHGA5--PCDHGA8: 19%|█▊ | 8/43 [00:00<00:03, 9.15it/s]
Processing PCDHGA5--PCDHGC3: 19%|█▊ | 8/43 [00:00<00:03, 9.15it/s]
Processing PCDHGA5--PCDHGC3: 21%|██ | 9/43 [00:00<00:03, 9.15it/s]
Processing PCDHGA5--PCDHGC4: 21%|██ | 9/43 [00:00<00:03, 9.15it/s]
Processing PCDHGA5--PCDHGC4: 23%|██▎ | 10/43 [00:01<00:03, 9.15it/s]
Processing STX16--NPEPL1: 23%|██▎ | 10/43 [00:01<00:03, 9.15it/s]
Processing STX16--NPEPL1: 26%|██▌ | 11/43 [00:01<00:03, 9.15it/s]
Processing PCDHGA5--PCDHGB7: 26%|██▌ | 11/43 [00:01<00:03, 9.15it/s]
Processing PCDHGA5--PCDHGB7: 28%|██▊ | 12/43 [00:01<00:03, 9.15it/s]
Processing PCDHGA5--PCDHGA12: 28%|██▊ | 12/43 [00:01<00:03, 9.15it/s]
Processing PCDHGA5--PCDHGA12: 30%|███ | 13/43 [00:01<00:03, 9.15it/s]
Processing PCDHGA5--PCDHGA11: 30%|███ | 13/43 [00:01<00:03, 9.15it/s]
Processing PCDHGA5--PCDHGA11: 33%|███▎ | 14/43 [00:01<00:03, 9.15it/s]
Processing PCDHGA5--PCDHGB6: 33%|███▎ | 14/43 [00:01<00:03, 9.15it/s]
Processing PCDHGA5--PCDHGB6: 35%|███▍ | 15/43 [00:01<00:03, 9.20it/s]
Processing PCDHGA5--PCDHGA9: 35%|███▍ | 15/43 [00:01<00:03, 9.20it/s]
Processing PCDHGA5--PCDHGA9: 37%|███▋ | 16/43 [00:01<00:02, 9.19it/s]
Processing PCDHGB2--PCDHGC5: 37%|███▋ | 16/43 [00:01<00:02, 9.19it/s]
Processing PCDHGB2--PCDHGC5: 40%|███▉ | 17/43 [00:01<00:02, 9.21it/s]
Processing PCDHGB2--PCDHGA10: 40%|███▉ | 17/43 [00:01<00:02, 9.21it/s]
Processing PCDHGB2--PCDHGA10: 42%|████▏ | 18/43 [00:01<00:02, 9.23it/s]
Processing PCDHGB2--PCDHGA8: 42%|████▏ | 18/43 [00:01<00:02, 9.23it/s]
Processing PCDHGB2--PCDHGA8: 44%|████▍ | 19/43 [00:02<00:02, 9.24it/s]
Processing PCDHGB2--PCDHGC3: 44%|████▍ | 19/43 [00:02<00:02, 9.24it/s]
Processing PCDHGB2--PCDHGC3: 47%|████▋ | 20/43 [00:02<00:02, 9.21it/s]
Processing PCDHGB2--PCDHGC4: 47%|████▋ | 20/43 [00:02<00:02, 9.21it/s]
Processing PCDHGB2--PCDHGC4: 49%|████▉ | 21/43 [00:02<00:02, 9.20it/s]
Processing PCDHGB2--PCDHGB7: 49%|████▉ | 21/43 [00:02<00:02, 9.20it/s]
Processing PCDHGB2--PCDHGB7: 51%|█████ | 22/43 [00:02<00:02, 9.18it/s]
Processing PCDHGB2--PCDHGA12: 51%|█████ | 22/43 [00:02<00:02, 9.18it/s]
Processing PCDHGB2--PCDHGA12: 53%|█████▎ | 23/43 [00:02<00:02, 9.17it/s]
Processing PCDHGB2--PCDHGA11: 53%|█████▎ | 23/43 [00:02<00:02, 9.17it/s]
Processing PCDHGB2--PCDHGA11: 56%|█████▌ | 24/43 [00:02<00:02, 9.16it/s]
Processing PCDHGB2--PCDHGB6: 56%|█████▌ | 24/43 [00:02<00:02, 9.16it/s]
Processing PCDHGB2--PCDHGB6: 58%|█████▊ | 25/43 [00:02<00:01, 9.15it/s]
Processing PCDHGB2--PCDHGA9: 58%|█████▊ | 25/43 [00:02<00:01, 9.15it/s]
Processing PCDHGB2--PCDHGA9: 60%|██████ | 26/43 [00:02<00:01, 9.15it/s]
Processing PCDHGA4--PCDHGC5: 60%|██████ | 26/43 [00:02<00:01, 9.15it/s]
Processing PCDHGA4--PCDHGC5: 63%|██████▎ | 27/43 [00:02<00:01, 9.15it/s]
Processing PCDHGA4--PCDHGA10: 63%|██████▎ | 27/43 [00:02<00:01, 9.15it/s]
Processing PCDHGA4--PCDHGA10: 65%|██████▌ | 28/43 [00:03<00:01, 9.15it/s]
Processing PCDHGA4--PCDHGA8: 65%|██████▌ | 28/43 [00:03<00:01, 9.15it/s]
Processing PCDHGA4--PCDHGA8: 67%|██████▋ | 29/43 [00:03<00:01, 9.13it/s]
Processing PCDHGA4--PCDHGC3: 67%|██████▋ | 29/43 [00:03<00:01, 9.13it/s]
Processing PCDHGA4--PCDHGC3: 70%|██████▉ | 30/43 [00:03<00:01, 9.14it/s]
Processing PCDHGA4--PCDHGC4: 70%|██████▉ | 30/43 [00:03<00:01, 9.14it/s]
Processing PCDHGA4--PCDHGC4: 72%|███████▏ | 31/43 [00:03<00:01, 9.15it/s]
Processing PCDHGA4--PCDHGB7: 72%|███████▏ | 31/43 [00:03<00:01, 9.15it/s]
Processing PCDHGA4--PCDHGB7: 74%|███████▍ | 32/43 [00:03<00:01, 9.15it/s]
Processing PCDHGA4--PCDHGA12: 74%|███████▍ | 32/43 [00:03<00:01, 9.15it/s]
Processing PCDHGA4--PCDHGA12: 77%|███████▋ | 33/43 [00:03<00:01, 9.15it/s]
Processing PCDHGA4--PCDHGA11: 77%|███████▋ | 33/43 [00:03<00:01, 9.15it/s]
Processing PCDHGA4--PCDHGA11: 79%|███████▉ | 34/43 [00:03<00:00, 9.15it/s]
Processing PCDHGA4--PCDHGB6: 79%|███████▉ | 34/43 [00:03<00:00, 9.15it/s]
Processing PCDHGA4--PCDHGB6: 81%|████████▏ | 35/43 [00:03<00:00, 9.15it/s]
Processing PCDHGA4--PCDHGA9: 81%|████████▏ | 35/43 [00:03<00:00, 9.15it/s]
Processing PCDHGA4--PCDHGA9: 84%|████████▎ | 36/43 [00:03<00:00, 9.17it/s]
Processing PCDHA6--PCDHAC2: 84%|████████▎ | 36/43 [00:03<00:00, 9.17it/s]
Processing PCDHA6--PCDHAC2: 86%|████████▌ | 37/43 [00:04<00:00, 9.16it/s]
Processing PCDHA6--PCDHAC1: 86%|████████▌ | 37/43 [00:04<00:00, 9.16it/s]
Processing PCDHA6--PCDHAC1: 88%|████████▊ | 38/43 [00:04<00:00, 9.17it/s]
Processing PCDHA6--PCDHA13: 88%|████████▊ | 38/43 [00:04<00:00, 9.17it/s]
Processing PCDHA6--PCDHA13: 91%|█████████ | 39/43 [00:04<00:00, 9.16it/s]
Processing AC092807.3--DDAH1: 91%|█████████ | 39/43 [00:04<00:00, 9.16it/s]
Processing AC092807.3--DDAH1: 93%|█████████▎| 40/43 [00:04<00:00, 9.17it/s]
Processing MTHFD1--WHRN: 93%|█████████▎| 40/43 [00:04<00:00, 9.17it/s]
Processing MTHFD1--WHRN: 95%|█████████▌| 41/43 [00:04<00:00, 9.18it/s]
Processing MTHFD1--AL160275.2: 95%|█████████▌| 41/43 [00:04<00:00, 9.18it/s]
Processing MTHFD1--AL160275.2: 98%|█████████▊| 42/43 [00:04<00:00, 9.22it/s]
Processing KLRC4--KLRK1: 98%|█████████▊| 42/43 [00:04<00:00, 9.22it/s]
Processing KLRC4--KLRK1: 100%|██████████| 43/43 [00:04<00:00, 9.26it/s]
Processing KLRC4--KLRK1: 100%|██████████| 43/43 [00:04<00:00, 9.16it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory