Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/19f9cdc5039197c80769c04f80713a/aih-tih-sc-a03f86-R1_B23WHYVLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-8900cb43-4dca-49ac-a290-1d176a2e0012/bb/b9dd0d6df869a3d0edd9f161adc899/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/49719d033784a70415464e0936c152/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/a9aa802bd1a9c31d638ddb7c386232/aih-tih-sc-a03f86-R1_B23WHYVLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/49719d033784a70415464e0936c152/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
FSIP1--AC013652.1
starfusion
arriba
COL1A1--SLC45A4
starfusion
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
TVP23C--CDRT4
arriba
PCDHGA5--PCDHGC5
arriba
PCDHGA5--PCDHGA10
arriba
PCDHGA5--PCDHGA8
arriba
PCDHGA5--PCDHGC3
arriba
PCDHGA5--PCDHGC4
arriba
STX16--NPEPL1
arriba
PCDHGA5--PCDHGB7
arriba
PCDHGA5--PCDHGA12
arriba
PCDHGA5--PCDHGA11
arriba
PCDHGA5--PCDHGB6
arriba
PCDHGA5--PCDHGA9
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGA4--PCDHGC5
arriba
PCDHGA4--PCDHGA10
arriba
PCDHGA4--PCDHGA8
arriba
PCDHGA4--PCDHGC3
arriba
PCDHGA4--PCDHGC4
arriba
PCDHGA4--PCDHGB7
arriba
PCDHGA4--PCDHGA12
arriba
PCDHGA4--PCDHGA11
arriba
PCDHGA4--PCDHGB6
arriba
PCDHGA4--PCDHGA9
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHA13
arriba
AC092807.3--DDAH1
arriba
MTHFD1--WHRN
arriba
MTHFD1--AL160275.2
arriba
KLRC4--KLRK1
arriba

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Processing FSIP1--AC013652.1:   0%|          | 0/43 [00:00<?, ?it/s]
Processing FSIP1--AC013652.1:   2%|▏         | 1/43 [00:00<00:04,  8.59it/s]
Processing COL1A1--SLC45A4:   2%|▏         | 1/43 [00:00<00:04,  8.59it/s]  
Processing COL1A1--SLC45A4:   5%|▍         | 2/43 [00:00<00:04,  8.92it/s]
Processing TLK2P1--AC110079.1:   5%|▍         | 2/43 [00:00<00:04,  8.92it/s]
Processing TLK2P1--AC110079.1:   7%|▋         | 3/43 [00:00<00:04,  9.03it/s]
Processing TLK2--AC240565.1:   7%|▋         | 3/43 [00:00<00:04,  9.03it/s]  
Processing TLK2--AC240565.1:   9%|▉         | 4/43 [00:00<00:04,  9.09it/s]
Processing TVP23C--CDRT4:   9%|▉         | 4/43 [00:00<00:04,  9.09it/s]   
Processing TVP23C--CDRT4:  12%|█▏        | 5/43 [00:00<00:04,  9.11it/s]
Processing PCDHGA5--PCDHGC5:  12%|█▏        | 5/43 [00:00<00:04,  9.11it/s]
Processing PCDHGA5--PCDHGC5:  14%|█▍        | 6/43 [00:00<00:04,  9.13it/s]
Processing PCDHGA5--PCDHGA10:  14%|█▍        | 6/43 [00:00<00:04,  9.13it/s]
Processing PCDHGA5--PCDHGA10:  16%|█▋        | 7/43 [00:00<00:03,  9.14it/s]
Processing PCDHGA5--PCDHGA8:  16%|█▋        | 7/43 [00:00<00:03,  9.14it/s] 
Processing PCDHGA5--PCDHGA8:  19%|█▊        | 8/43 [00:00<00:03,  9.15it/s]
Processing PCDHGA5--PCDHGC3:  19%|█▊        | 8/43 [00:00<00:03,  9.15it/s]
Processing PCDHGA5--PCDHGC3:  21%|██        | 9/43 [00:00<00:03,  9.15it/s]
Processing PCDHGA5--PCDHGC4:  21%|██        | 9/43 [00:00<00:03,  9.15it/s]
Processing PCDHGA5--PCDHGC4:  23%|██▎       | 10/43 [00:01<00:03,  9.15it/s]
Processing STX16--NPEPL1:  23%|██▎       | 10/43 [00:01<00:03,  9.15it/s]   
Processing STX16--NPEPL1:  26%|██▌       | 11/43 [00:01<00:03,  9.15it/s]
Processing PCDHGA5--PCDHGB7:  26%|██▌       | 11/43 [00:01<00:03,  9.15it/s]
Processing PCDHGA5--PCDHGB7:  28%|██▊       | 12/43 [00:01<00:03,  9.15it/s]
Processing PCDHGA5--PCDHGA12:  28%|██▊       | 12/43 [00:01<00:03,  9.15it/s]
Processing PCDHGA5--PCDHGA12:  30%|███       | 13/43 [00:01<00:03,  9.15it/s]
Processing PCDHGA5--PCDHGA11:  30%|███       | 13/43 [00:01<00:03,  9.15it/s]
Processing PCDHGA5--PCDHGA11:  33%|███▎      | 14/43 [00:01<00:03,  9.15it/s]
Processing PCDHGA5--PCDHGB6:  33%|███▎      | 14/43 [00:01<00:03,  9.15it/s] 
Processing PCDHGA5--PCDHGB6:  35%|███▍      | 15/43 [00:01<00:03,  9.20it/s]
Processing PCDHGA5--PCDHGA9:  35%|███▍      | 15/43 [00:01<00:03,  9.20it/s]
Processing PCDHGA5--PCDHGA9:  37%|███▋      | 16/43 [00:01<00:02,  9.19it/s]
Processing PCDHGB2--PCDHGC5:  37%|███▋      | 16/43 [00:01<00:02,  9.19it/s]
Processing PCDHGB2--PCDHGC5:  40%|███▉      | 17/43 [00:01<00:02,  9.21it/s]
Processing PCDHGB2--PCDHGA10:  40%|███▉      | 17/43 [00:01<00:02,  9.21it/s]
Processing PCDHGB2--PCDHGA10:  42%|████▏     | 18/43 [00:01<00:02,  9.23it/s]
Processing PCDHGB2--PCDHGA8:  42%|████▏     | 18/43 [00:01<00:02,  9.23it/s] 
Processing PCDHGB2--PCDHGA8:  44%|████▍     | 19/43 [00:02<00:02,  9.24it/s]
Processing PCDHGB2--PCDHGC3:  44%|████▍     | 19/43 [00:02<00:02,  9.24it/s]
Processing PCDHGB2--PCDHGC3:  47%|████▋     | 20/43 [00:02<00:02,  9.21it/s]
Processing PCDHGB2--PCDHGC4:  47%|████▋     | 20/43 [00:02<00:02,  9.21it/s]
Processing PCDHGB2--PCDHGC4:  49%|████▉     | 21/43 [00:02<00:02,  9.20it/s]
Processing PCDHGB2--PCDHGB7:  49%|████▉     | 21/43 [00:02<00:02,  9.20it/s]
Processing PCDHGB2--PCDHGB7:  51%|█████     | 22/43 [00:02<00:02,  9.18it/s]
Processing PCDHGB2--PCDHGA12:  51%|█████     | 22/43 [00:02<00:02,  9.18it/s]
Processing PCDHGB2--PCDHGA12:  53%|█████▎    | 23/43 [00:02<00:02,  9.17it/s]
Processing PCDHGB2--PCDHGA11:  53%|█████▎    | 23/43 [00:02<00:02,  9.17it/s]
Processing PCDHGB2--PCDHGA11:  56%|█████▌    | 24/43 [00:02<00:02,  9.16it/s]
Processing PCDHGB2--PCDHGB6:  56%|█████▌    | 24/43 [00:02<00:02,  9.16it/s] 
Processing PCDHGB2--PCDHGB6:  58%|█████▊    | 25/43 [00:02<00:01,  9.15it/s]
Processing PCDHGB2--PCDHGA9:  58%|█████▊    | 25/43 [00:02<00:01,  9.15it/s]
Processing PCDHGB2--PCDHGA9:  60%|██████    | 26/43 [00:02<00:01,  9.15it/s]
Processing PCDHGA4--PCDHGC5:  60%|██████    | 26/43 [00:02<00:01,  9.15it/s]
Processing PCDHGA4--PCDHGC5:  63%|██████▎   | 27/43 [00:02<00:01,  9.15it/s]
Processing PCDHGA4--PCDHGA10:  63%|██████▎   | 27/43 [00:02<00:01,  9.15it/s]
Processing PCDHGA4--PCDHGA10:  65%|██████▌   | 28/43 [00:03<00:01,  9.15it/s]
Processing PCDHGA4--PCDHGA8:  65%|██████▌   | 28/43 [00:03<00:01,  9.15it/s] 
Processing PCDHGA4--PCDHGA8:  67%|██████▋   | 29/43 [00:03<00:01,  9.13it/s]
Processing PCDHGA4--PCDHGC3:  67%|██████▋   | 29/43 [00:03<00:01,  9.13it/s]
Processing PCDHGA4--PCDHGC3:  70%|██████▉   | 30/43 [00:03<00:01,  9.14it/s]
Processing PCDHGA4--PCDHGC4:  70%|██████▉   | 30/43 [00:03<00:01,  9.14it/s]
Processing PCDHGA4--PCDHGC4:  72%|███████▏  | 31/43 [00:03<00:01,  9.15it/s]
Processing PCDHGA4--PCDHGB7:  72%|███████▏  | 31/43 [00:03<00:01,  9.15it/s]
Processing PCDHGA4--PCDHGB7:  74%|███████▍  | 32/43 [00:03<00:01,  9.15it/s]
Processing PCDHGA4--PCDHGA12:  74%|███████▍  | 32/43 [00:03<00:01,  9.15it/s]
Processing PCDHGA4--PCDHGA12:  77%|███████▋  | 33/43 [00:03<00:01,  9.15it/s]
Processing PCDHGA4--PCDHGA11:  77%|███████▋  | 33/43 [00:03<00:01,  9.15it/s]
Processing PCDHGA4--PCDHGA11:  79%|███████▉  | 34/43 [00:03<00:00,  9.15it/s]
Processing PCDHGA4--PCDHGB6:  79%|███████▉  | 34/43 [00:03<00:00,  9.15it/s] 
Processing PCDHGA4--PCDHGB6:  81%|████████▏ | 35/43 [00:03<00:00,  9.15it/s]
Processing PCDHGA4--PCDHGA9:  81%|████████▏ | 35/43 [00:03<00:00,  9.15it/s]
Processing PCDHGA4--PCDHGA9:  84%|████████▎ | 36/43 [00:03<00:00,  9.17it/s]
Processing PCDHA6--PCDHAC2:  84%|████████▎ | 36/43 [00:03<00:00,  9.17it/s] 
Processing PCDHA6--PCDHAC2:  86%|████████▌ | 37/43 [00:04<00:00,  9.16it/s]
Processing PCDHA6--PCDHAC1:  86%|████████▌ | 37/43 [00:04<00:00,  9.16it/s]
Processing PCDHA6--PCDHAC1:  88%|████████▊ | 38/43 [00:04<00:00,  9.17it/s]
Processing PCDHA6--PCDHA13:  88%|████████▊ | 38/43 [00:04<00:00,  9.17it/s]
Processing PCDHA6--PCDHA13:  91%|█████████ | 39/43 [00:04<00:00,  9.16it/s]
Processing AC092807.3--DDAH1:  91%|█████████ | 39/43 [00:04<00:00,  9.16it/s]
Processing AC092807.3--DDAH1:  93%|█████████▎| 40/43 [00:04<00:00,  9.17it/s]
Processing MTHFD1--WHRN:  93%|█████████▎| 40/43 [00:04<00:00,  9.17it/s]     
Processing MTHFD1--WHRN:  95%|█████████▌| 41/43 [00:04<00:00,  9.18it/s]
Processing MTHFD1--AL160275.2:  95%|█████████▌| 41/43 [00:04<00:00,  9.18it/s]
Processing MTHFD1--AL160275.2:  98%|█████████▊| 42/43 [00:04<00:00,  9.22it/s]
Processing KLRC4--KLRK1:  98%|█████████▊| 42/43 [00:04<00:00,  9.22it/s]      
Processing KLRC4--KLRK1: 100%|██████████| 43/43 [00:04<00:00,  9.26it/s]
Processing KLRC4--KLRK1: 100%|██████████| 43/43 [00:04<00:00,  9.16it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory