File Info
- Filename
- aih-tih-sc-a03f86-R1_B23WHYVLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/49719d033784a70415464e0936c152/aih-tih-sc-a03f86-R1_B23WHYVLT4_1.fusions.csv
- Size
- 10.2 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-a03f86-R1_B23WHYVLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| FSIP1--AC013652.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr15:39600845#chr15:39071608,reading-frame: .,type: deletion,split_reads1: 26,split_reads2: 3,discordant_mates: 3,coverage1: 823,coverage2: 7,confidence: high | position: chr15:39600845:-#chr15:39071608:-,junction_reads: 29,spanning_reads: 3,ffmp: 0.1979 | |
| COL1A1--SLC45A4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:50189867:-#chr8:141254178:-,junction_reads: 25,spanning_reads: 0,ffmp: 0.1571 | ||
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 17,spanning_reads: 0,ffmp: 0.1045 | ||
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 11,spanning_reads: 0,ffmp: 0.0105 | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 37,split_reads2: 52,discordant_mates: 2,coverage1: 426,coverage2: 293,confidence: high | |
| PCDHGA5--PCDHGC5 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 58,split_reads2: 27,discordant_mates: 0,coverage1: 532,coverage2: 5391,confidence: high | ||
| PCDHGA5--PCDHGA10 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 58,split_reads2: 27,discordant_mates: 0,coverage1: 532,coverage2: 5391,confidence: high | ||
| PCDHGA5--PCDHGA8 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 58,split_reads2: 27,discordant_mates: 0,coverage1: 532,coverage2: 5391,confidence: high | ||
| PCDHGA5--PCDHGC3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 58,split_reads2: 27,discordant_mates: 0,coverage1: 532,coverage2: 5391,confidence: high | ||
| PCDHGA5--PCDHGC4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 58,split_reads2: 27,discordant_mates: 0,coverage1: 532,coverage2: 5391,confidence: high | ||
| STX16--NPEPL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 47,split_reads2: 35,discordant_mates: 3,coverage1: 1318,coverage2: 349,confidence: high | ||
| PCDHGA5--PCDHGB7 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 58,split_reads2: 27,discordant_mates: 0,coverage1: 532,coverage2: 5391,confidence: high | ||
| PCDHGA5--PCDHGA12 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 58,split_reads2: 27,discordant_mates: 0,coverage1: 532,coverage2: 5391,confidence: high | ||
| PCDHGA5--PCDHGA11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 58,split_reads2: 27,discordant_mates: 0,coverage1: 532,coverage2: 5391,confidence: high | ||
| PCDHGA5--PCDHGB6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 58,split_reads2: 27,discordant_mates: 0,coverage1: 532,coverage2: 5391,confidence: high | ||
| PCDHGA5--PCDHGA9 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141366751#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 58,split_reads2: 27,discordant_mates: 0,coverage1: 532,coverage2: 5391,confidence: high | ||
| PCDHGB2--PCDHGC5 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 56,split_reads2: 28,discordant_mates: 0,coverage1: 444,coverage2: 5391,confidence: high | ||
| PCDHGB2--PCDHGA10 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 56,split_reads2: 28,discordant_mates: 0,coverage1: 444,coverage2: 5391,confidence: high | ||
| PCDHGB2--PCDHGA8 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 56,split_reads2: 28,discordant_mates: 0,coverage1: 444,coverage2: 5391,confidence: high | ||
| PCDHGB2--PCDHGC3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 56,split_reads2: 28,discordant_mates: 0,coverage1: 444,coverage2: 5391,confidence: high | ||
| PCDHGB2--PCDHGC4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 56,split_reads2: 28,discordant_mates: 0,coverage1: 444,coverage2: 5391,confidence: high | ||
| PCDHGB2--PCDHGB7 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 56,split_reads2: 28,discordant_mates: 0,coverage1: 444,coverage2: 5391,confidence: high | ||
| PCDHGB2--PCDHGA12 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 56,split_reads2: 28,discordant_mates: 0,coverage1: 444,coverage2: 5391,confidence: high | ||
| PCDHGB2--PCDHGA11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 56,split_reads2: 28,discordant_mates: 0,coverage1: 444,coverage2: 5391,confidence: high | ||
| PCDHGB2--PCDHGB6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 56,split_reads2: 28,discordant_mates: 0,coverage1: 444,coverage2: 5391,confidence: high | ||
| PCDHGB2--PCDHGA9 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141362556#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 56,split_reads2: 28,discordant_mates: 0,coverage1: 444,coverage2: 5391,confidence: high | ||
| PCDHGA4--PCDHGC5 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141357621#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 54,split_reads2: 25,discordant_mates: 0,coverage1: 462,coverage2: 5391,confidence: high | ||
| PCDHGA4--PCDHGA10 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141357621#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 54,split_reads2: 25,discordant_mates: 0,coverage1: 462,coverage2: 5391,confidence: high | ||
| PCDHGA4--PCDHGA8 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141357621#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 54,split_reads2: 25,discordant_mates: 0,coverage1: 462,coverage2: 5391,confidence: high | ||
| PCDHGA4--PCDHGC3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141357621#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 54,split_reads2: 25,discordant_mates: 0,coverage1: 462,coverage2: 5391,confidence: high | ||
| PCDHGA4--PCDHGC4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141357621#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 54,split_reads2: 25,discordant_mates: 0,coverage1: 462,coverage2: 5391,confidence: high | ||
| PCDHGA4--PCDHGB7 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141357621#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 54,split_reads2: 25,discordant_mates: 0,coverage1: 462,coverage2: 5391,confidence: high | ||
| PCDHGA4--PCDHGA12 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141357621#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 54,split_reads2: 25,discordant_mates: 0,coverage1: 462,coverage2: 5391,confidence: high | ||
| PCDHGA4--PCDHGA11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141357621#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 54,split_reads2: 25,discordant_mates: 0,coverage1: 462,coverage2: 5391,confidence: high | ||
| PCDHGA4--PCDHGB6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141357621#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 54,split_reads2: 25,discordant_mates: 0,coverage1: 462,coverage2: 5391,confidence: high | ||
| PCDHGA4--PCDHGA9 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:141357621#chr5:141494807,reading-frame: in-frame,type: deletion/read-through,split_reads1: 54,split_reads2: 25,discordant_mates: 0,coverage1: 462,coverage2: 5391,confidence: high | ||
| PCDHA6--PCDHAC2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140830485#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 7,split_reads2: 49,discordant_mates: 2,coverage1: 151,coverage2: 1270,confidence: high | ||
| PCDHA6--PCDHAC1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140830485#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 7,split_reads2: 49,discordant_mates: 2,coverage1: 151,coverage2: 1270,confidence: high | ||
| PCDHA6--PCDHA13 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:140830485#chr5:140978949,reading-frame: in-frame,type: deletion/read-through,split_reads1: 7,split_reads2: 49,discordant_mates: 2,coverage1: 151,coverage2: 1270,confidence: high | ||
| AC092807.3--DDAH1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:85496166#chr1:85358847,reading-frame: .,type: deletion/read-through,split_reads1: 22,split_reads2: 34,discordant_mates: 0,coverage1: 79,coverage2: 450,confidence: high | ||
| MTHFD1--WHRN | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr14:64400877#chr9:114541688,reading-frame: out-of-frame,type: translocation,split_reads1: 43,split_reads2: 3,discordant_mates: 0,coverage1: 1029,coverage2: 4,confidence: high | ||
| MTHFD1--AL160275.2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr14:64400877#chr9:114541688,reading-frame: out-of-frame,type: translocation,split_reads1: 43,split_reads2: 3,discordant_mates: 0,coverage1: 1029,coverage2: 4,confidence: high | ||
| KLRC4--KLRK1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:10407636#chr12:10388875,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 16,split_reads2: 3,discordant_mates: 2,coverage1: 76,coverage2: 187,confidence: high |
44 rows