Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/359c8b960e45652f48b6be20cbb7f1/aih-tih-sc-1ba302-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/c4a8c614c6c155bcee93ece939f53d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/ffd79a928055941e334b80b2b6d101/aih-tih-sc-1ba302-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/c4a8c614c6c155bcee93ece939f53d/.command.run
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-1ba302-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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