Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/2782562c2e046c26b98795f9d9e8ed/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/2782562c2e046c26b98795f9d9e8ed/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/a9dcb2751cb968ecf99ffcc4fef571/aih-tih-sc-20b7e4-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/a9d937bc1c6ec362de7939e3cc3670/aih-tih-sc-20b7e4-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-20b7e4-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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