Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/44c8f8f6a1d2dfc9a31df0f7e9e813/aih-tih-sc-d5506e-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/d6aa7aafd7659b68197da95268f870/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/d6aa7aafd7659b68197da95268f870/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx121241M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-d5506e-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-d5506e-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-d5506e-R1_B23WHYVLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
09:27:28.714 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 09:27:28 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-d5506e-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-d5506e-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-d5506e-R1_B23WHYVLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 09:27:28 GMT 2026] Executing as ?@nf-9cd6aa7aafd7659b68197da95268f870-8bd24-z962m on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 09:27:28 MarkDuplicates Start of doWork freeMemory: 105132008; totalMemory: 134217728; maxMemory: 127137742848
INFO 2026-06-08 09:27:28 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 09:27:28 MarkDuplicates Will retain up to 460643995 data points before spilling to disk.
INFO 2026-06-08 09:27:34 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,637,394
INFO 2026-06-08 09:27:34 MarkDuplicates Tracking 3158 as yet unmatched pairs. 153 records in RAM.
INFO 2026-06-08 09:27:36 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:7,827,718
INFO 2026-06-08 09:27:36 MarkDuplicates Tracking 6504 as yet unmatched pairs. 301 records in RAM.
INFO 2026-06-08 09:27:38 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:11,055,836
INFO 2026-06-08 09:27:38 MarkDuplicates Tracking 9231 as yet unmatched pairs. 283 records in RAM.
INFO 2026-06-08 09:27:41 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:15,872,970
INFO 2026-06-08 09:27:41 MarkDuplicates Tracking 11746 as yet unmatched pairs. 149 records in RAM.
INFO 2026-06-08 09:27:43 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:19,141,648
INFO 2026-06-08 09:27:43 MarkDuplicates Tracking 14288 as yet unmatched pairs. 306 records in RAM.
INFO 2026-06-08 09:27:45 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:21,823,304
INFO 2026-06-08 09:27:45 MarkDuplicates Tracking 17750 as yet unmatched pairs. 1090 records in RAM.
INFO 2026-06-08 09:27:47 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 2s. Last read position: chr1:21,873,951
INFO 2026-06-08 09:27:47 MarkDuplicates Tracking 21167 as yet unmatched pairs. 1309 records in RAM.
INFO 2026-06-08 09:27:49 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:23,436,559
INFO 2026-06-08 09:27:49 MarkDuplicates Tracking 22915 as yet unmatched pairs. 91 records in RAM.
INFO 2026-06-08 09:27:52 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:26,775,067
INFO 2026-06-08 09:27:52 MarkDuplicates Tracking 25611 as yet unmatched pairs. 167 records in RAM.
INFO 2026-06-08 09:27:54 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 2s. Last read position: chr1:30,876,725
INFO 2026-06-08 09:27:54 MarkDuplicates Tracking 28399 as yet unmatched pairs. 166 records in RAM.
INFO 2026-06-08 09:27:56 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:32,386,873
INFO 2026-06-08 09:27:56 MarkDuplicates Tracking 31153 as yet unmatched pairs. 65 records in RAM.
INFO 2026-06-08 09:27:58 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:36,179,723
INFO 2026-06-08 09:27:58 MarkDuplicates Tracking 34428 as yet unmatched pairs. 287 records in RAM.
INFO 2026-06-08 09:28:01 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 2s. Last read position: chr1:39,479,867
INFO 2026-06-08 09:28:01 MarkDuplicates Tracking 37705 as yet unmatched pairs. 868 records in RAM.
INFO 2026-06-08 09:28:03 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:43,452,900
INFO 2026-06-08 09:28:03 MarkDuplicates Tracking 39825 as yet unmatched pairs. 304 records in RAM.
INFO 2026-06-08 09:28:05 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:46,279,577
INFO 2026-06-08 09:28:05 MarkDuplicates Tracking 42611 as yet unmatched pairs. 273 records in RAM.
INFO 2026-06-08 09:28:07 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:53,078,965
INFO 2026-06-08 09:28:07 MarkDuplicates Tracking 45839 as yet unmatched pairs. 656 records in RAM.
INFO 2026-06-08 09:28:10 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:64,591,293
INFO 2026-06-08 09:28:10 MarkDuplicates Tracking 48058 as yet unmatched pairs. 40 records in RAM.
INFO 2026-06-08 09:28:12 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 2s. Last read position: chr1:85,183,004
INFO 2026-06-08 09:28:12 MarkDuplicates Tracking 50674 as yet unmatched pairs. 154 records in RAM.
INFO 2026-06-08 09:28:14 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:93,592,355
INFO 2026-06-08 09:28:14 MarkDuplicates Tracking 53269 as yet unmatched pairs. 42 records in RAM.
INFO 2026-06-08 09:28:16 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:109,253,337
INFO 2026-06-08 09:28:16 MarkDuplicates Tracking 55900 as yet unmatched pairs. 136 records in RAM.
INFO 2026-06-08 09:28:18 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:113,641,968
INFO 2026-06-08 09:28:18 MarkDuplicates Tracking 58531 as yet unmatched pairs. 136 records in RAM.
INFO 2026-06-08 09:28:20 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:119,259,382
INFO 2026-06-08 09:28:20 MarkDuplicates Tracking 61100 as yet unmatched pairs. 10 records in RAM.
INFO 2026-06-08 09:28:22 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 2s. Last read position: chr1:119,963,548
INFO 2026-06-08 09:28:22 MarkDuplicates Tracking 64679 as yet unmatched pairs. 703 records in RAM.
INFO 2026-06-08 09:28:24 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:144,429,803
INFO 2026-06-08 09:28:24 MarkDuplicates Tracking 66178 as yet unmatched pairs. 600 records in RAM.
INFO 2026-06-08 09:28:26 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:146,138,381
INFO 2026-06-08 09:28:26 MarkDuplicates Tracking 67962 as yet unmatched pairs. 856 records in RAM.
INFO 2026-06-08 09:28:28 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:148,571,700
INFO 2026-06-08 09:28:28 MarkDuplicates Tracking 68367 as yet unmatched pairs. 151 records in RAM.
INFO 2026-06-08 09:28:29 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:149,812,062
INFO 2026-06-08 09:28:29 MarkDuplicates Tracking 69393 as yet unmatched pairs. 89 records in RAM.
INFO 2026-06-08 09:28:31 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:150,796,627
INFO 2026-06-08 09:28:31 MarkDuplicates Tracking 80789 as yet unmatched pairs. 8774 records in RAM.
INFO 2026-06-08 09:28:33 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:152,214,544
INFO 2026-06-08 09:28:33 MarkDuplicates Tracking 75164 as yet unmatched pairs. 452 records in RAM.
INFO 2026-06-08 09:28:35 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:154,170,437
INFO 2026-06-08 09:28:35 MarkDuplicates Tracking 84921 as yet unmatched pairs. 7786 records in RAM.
INFO 2026-06-08 09:28:37 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 2s. Last read position: chr1:155,061,931
INFO 2026-06-08 09:28:37 MarkDuplicates Tracking 80064 as yet unmatched pairs. 285 records in RAM.
INFO 2026-06-08 09:28:39 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:155,765,957
INFO 2026-06-08 09:28:39 MarkDuplicates Tracking 82521 as yet unmatched pairs. 304 records in RAM.
INFO 2026-06-08 09:28:41 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:156,213,126
INFO 2026-06-08 09:28:41 MarkDuplicates Tracking 85844 as yet unmatched pairs. 156 records in RAM.
INFO 2026-06-08 09:28:43 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 2s. Last read position: chr1:160,091,897
INFO 2026-06-08 09:28:43 MarkDuplicates Tracking 88461 as yet unmatched pairs. 76 records in RAM.
INFO 2026-06-08 09:28:44 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:161,983,935
INFO 2026-06-08 09:28:44 MarkDuplicates Tracking 91781 as yet unmatched pairs. 929 records in RAM.
INFO 2026-06-08 09:28:47 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 2s. Last read position: chr1:171,209,027
INFO 2026-06-08 09:28:47 MarkDuplicates Tracking 94129 as yet unmatched pairs. 613 records in RAM.
INFO 2026-06-08 09:28:49 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 2s. Last read position: chr1:179,117,332
INFO 2026-06-08 09:28:49 MarkDuplicates Tracking 96044 as yet unmatched pairs. 80 records in RAM.
INFO 2026-06-08 09:28:52 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 2s. Last read position: chr1:184,795,192
INFO 2026-06-08 09:28:52 MarkDuplicates Tracking 99127 as yet unmatched pairs. 405 records in RAM.
INFO 2026-06-08 09:28:54 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 2s. Last read position: chr1:186,360,806
INFO 2026-06-08 09:28:54 MarkDuplicates Tracking 102234 as yet unmatched pairs. 982 records in RAM.
INFO 2026-06-08 09:28:55 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:201,900,227
INFO 2026-06-08 09:28:55 MarkDuplicates Tracking 103836 as yet unmatched pairs. 23 records in RAM.
INFO 2026-06-08 09:28:57 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:203,847,512
INFO 2026-06-08 09:28:57 MarkDuplicates Tracking 107309 as yet unmatched pairs. 819 records in RAM.
INFO 2026-06-08 09:28:59 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:207,886,769
INFO 2026-06-08 09:28:59 MarkDuplicates Tracking 109382 as yet unmatched pairs. 586 records in RAM.
INFO 2026-06-08 09:29:01 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 2s. Last read position: chr1:221,739,378
INFO 2026-06-08 09:29:01 MarkDuplicates Tracking 111638 as yet unmatched pairs. 165 records in RAM.
INFO 2026-06-08 09:29:04 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 2s. Last read position: chr1:226,881,905
INFO 2026-06-08 09:29:04 MarkDuplicates Tracking 114125 as yet unmatched pairs. 161 records in RAM.
INFO 2026-06-08 09:29:06 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:235,113,900
INFO 2026-06-08 09:29:06 MarkDuplicates Tracking 117294 as yet unmatched pairs. 299 records in RAM.
INFO 2026-06-08 09:29:08 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:244,858,839
INFO 2026-06-08 09:29:08 MarkDuplicates Tracking 120265 as yet unmatched pairs. 731 records in RAM.
INFO 2026-06-08 09:29:11 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 3s. Last read position: chr2:9,492,977
INFO 2026-06-08 09:29:11 MarkDuplicates Tracking 122555 as yet unmatched pairs. 122286 records in RAM.
INFO 2026-06-08 09:29:13 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 2s. Last read position: chr2:24,216,151
INFO 2026-06-08 09:29:13 MarkDuplicates Tracking 125207 as yet unmatched pairs. 124930 records in RAM.
INFO 2026-06-08 09:29:15 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 2s. Last read position: chr2:27,134,351
INFO 2026-06-08 09:29:15 MarkDuplicates Tracking 128046 as yet unmatched pairs. 127765 records in RAM.
INFO 2026-06-08 09:29:17 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 2s. Last read position: chr2:32,482,524
INFO 2026-06-08 09:29:17 MarkDuplicates Tracking 130968 as yet unmatched pairs. 130684 records in RAM.
INFO 2026-06-08 09:29:19 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,263
INFO 2026-06-08 09:29:19 MarkDuplicates Tracking 217384 as yet unmatched pairs. 129684 records in RAM.
INFO 2026-06-08 09:29:21 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:29:21 MarkDuplicates Tracking 878040 as yet unmatched pairs. 116871 records in RAM.
INFO 2026-06-08 09:29:24 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:29:24 MarkDuplicates Tracking 1256861 as yet unmatched pairs. 109895 records in RAM.
INFO 2026-06-08 09:29:25 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:29:25 MarkDuplicates Tracking 1261222 as yet unmatched pairs. 109844 records in RAM.
INFO 2026-06-08 09:29:27 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:37,646,363
INFO 2026-06-08 09:29:27 MarkDuplicates Tracking 1351369 as yet unmatched pairs. 106932 records in RAM.
INFO 2026-06-08 09:29:29 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:43,894,560
INFO 2026-06-08 09:29:29 MarkDuplicates Tracking 1348887 as yet unmatched pairs. 104447 records in RAM.
INFO 2026-06-08 09:29:31 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:54,629,531
INFO 2026-06-08 09:29:31 MarkDuplicates Tracking 1346716 as yet unmatched pairs. 102266 records in RAM.
INFO 2026-06-08 09:29:33 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 2s. Last read position: chr2:60,468,754
INFO 2026-06-08 09:29:33 MarkDuplicates Tracking 1343294 as yet unmatched pairs. 98842 records in RAM.
INFO 2026-06-08 09:29:35 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 2s. Last read position: chr2:69,245,262
INFO 2026-06-08 09:29:35 MarkDuplicates Tracking 1340524 as yet unmatched pairs. 96026 records in RAM.
INFO 2026-06-08 09:29:37 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 2s. Last read position: chr2:74,154,110
INFO 2026-06-08 09:29:37 MarkDuplicates Tracking 1337818 as yet unmatched pairs. 93300 records in RAM.
INFO 2026-06-08 09:29:39 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 2s. Last read position: chr2:86,070,123
INFO 2026-06-08 09:29:39 MarkDuplicates Tracking 1334899 as yet unmatched pairs. 90377 records in RAM.
INFO 2026-06-08 09:29:41 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:95,958,591
INFO 2026-06-08 09:29:41 MarkDuplicates Tracking 1333226 as yet unmatched pairs. 88704 records in RAM.
INFO 2026-06-08 09:29:43 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 2s. Last read position: chr2:100,569,687
INFO 2026-06-08 09:29:43 MarkDuplicates Tracking 1330654 as yet unmatched pairs. 86126 records in RAM.
INFO 2026-06-08 09:29:45 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 2s. Last read position: chr2:108,762,163
INFO 2026-06-08 09:29:45 MarkDuplicates Tracking 1328646 as yet unmatched pairs. 84113 records in RAM.
INFO 2026-06-08 09:29:47 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:110,546,577
INFO 2026-06-08 09:29:47 MarkDuplicates Tracking 1327578 as yet unmatched pairs. 83044 records in RAM.
INFO 2026-06-08 09:29:49 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:121,348,436
INFO 2026-06-08 09:29:49 MarkDuplicates Tracking 1325239 as yet unmatched pairs. 80705 records in RAM.
INFO 2026-06-08 09:29:50 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:131,591,886
INFO 2026-06-08 09:29:50 MarkDuplicates Tracking 1323569 as yet unmatched pairs. 79022 records in RAM.
INFO 2026-06-08 09:29:52 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 2s. Last read position: chr2:151,883,258
INFO 2026-06-08 09:29:52 MarkDuplicates Tracking 1320268 as yet unmatched pairs. 75709 records in RAM.
INFO 2026-06-08 09:29:54 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:165,883,773
INFO 2026-06-08 09:29:54 MarkDuplicates Tracking 1317875 as yet unmatched pairs. 73299 records in RAM.
INFO 2026-06-08 09:29:56 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 2s. Last read position: chr2:174,581,315
INFO 2026-06-08 09:29:56 MarkDuplicates Tracking 1315928 as yet unmatched pairs. 71348 records in RAM.
INFO 2026-06-08 09:29:58 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 2s. Last read position: chr2:182,978,900
INFO 2026-06-08 09:29:58 MarkDuplicates Tracking 1312886 as yet unmatched pairs. 68297 records in RAM.
INFO 2026-06-08 09:30:01 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 2s. Last read position: chr2:188,990,331
INFO 2026-06-08 09:30:01 MarkDuplicates Tracking 1315758 as yet unmatched pairs. 71168 records in RAM.
INFO 2026-06-08 09:30:03 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 2s. Last read position: chr2:188,995,694
INFO 2026-06-08 09:30:03 MarkDuplicates Tracking 1316285 as yet unmatched pairs. 71685 records in RAM.
INFO 2026-06-08 09:30:05 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 2s. Last read position: chr2:189,001,537
INFO 2026-06-08 09:30:05 MarkDuplicates Tracking 1308306 as yet unmatched pairs. 63706 records in RAM.
INFO 2026-06-08 09:30:07 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 2s. Last read position: chr2:189,007,885
INFO 2026-06-08 09:30:07 MarkDuplicates Tracking 1314081 as yet unmatched pairs. 69481 records in RAM.
INFO 2026-06-08 09:30:10 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 2s. Last read position: chr2:189,011,674
INFO 2026-06-08 09:30:10 MarkDuplicates Tracking 1301569 as yet unmatched pairs. 56959 records in RAM.
INFO 2026-06-08 09:30:12 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 2s. Last read position: chr2:190,995,165
INFO 2026-06-08 09:30:12 MarkDuplicates Tracking 1294086 as yet unmatched pairs. 49471 records in RAM.
INFO 2026-06-08 09:30:14 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 2s. Last read position: chr2:201,761,025
INFO 2026-06-08 09:30:14 MarkDuplicates Tracking 1291581 as yet unmatched pairs. 46962 records in RAM.
INFO 2026-06-08 09:30:16 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:210,153,954
INFO 2026-06-08 09:30:16 MarkDuplicates Tracking 1288946 as yet unmatched pairs. 44315 records in RAM.
INFO 2026-06-08 09:30:18 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 2s. Last read position: chr2:215,367,990
INFO 2026-06-08 09:30:18 MarkDuplicates Tracking 1295687 as yet unmatched pairs. 51055 records in RAM.
INFO 2026-06-08 09:30:20 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 2s. Last read position: chr2:215,372,363
INFO 2026-06-08 09:30:20 MarkDuplicates Tracking 1293898 as yet unmatched pairs. 49266 records in RAM.
INFO 2026-06-08 09:30:22 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 2s. Last read position: chr2:215,376,619
INFO 2026-06-08 09:30:22 MarkDuplicates Tracking 1291501 as yet unmatched pairs. 46869 records in RAM.
INFO 2026-06-08 09:30:24 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:215,384,044
INFO 2026-06-08 09:30:24 MarkDuplicates Tracking 1286338 as yet unmatched pairs. 41706 records in RAM.
INFO 2026-06-08 09:30:26 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 2s. Last read position: chr2:215,394,606
INFO 2026-06-08 09:30:26 MarkDuplicates Tracking 1279827 as yet unmatched pairs. 35195 records in RAM.
INFO 2026-06-08 09:30:28 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 2s. Last read position: chr2:215,406,384
INFO 2026-06-08 09:30:28 MarkDuplicates Tracking 1277294 as yet unmatched pairs. 32662 records in RAM.
INFO 2026-06-08 09:30:30 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 2s. Last read position: chr2:215,409,954
INFO 2026-06-08 09:30:30 MarkDuplicates Tracking 1280145 as yet unmatched pairs. 35513 records in RAM.
INFO 2026-06-08 09:30:32 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:215,424,083
INFO 2026-06-08 09:30:32 MarkDuplicates Tracking 1274407 as yet unmatched pairs. 29775 records in RAM.
INFO 2026-06-08 09:30:35 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 2s. Last read position: chr2:215,433,337
INFO 2026-06-08 09:30:35 MarkDuplicates Tracking 1273941 as yet unmatched pairs. 29306 records in RAM.
INFO 2026-06-08 09:30:37 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 2s. Last read position: chr2:217,818,635
INFO 2026-06-08 09:30:37 MarkDuplicates Tracking 1263224 as yet unmatched pairs. 18587 records in RAM.
INFO 2026-06-08 09:30:39 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:219,225,521
INFO 2026-06-08 09:30:39 MarkDuplicates Tracking 1260142 as yet unmatched pairs. 15500 records in RAM.
INFO 2026-06-08 09:30:41 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 2s. Last read position: chr2:230,446,876
INFO 2026-06-08 09:30:41 MarkDuplicates Tracking 1257178 as yet unmatched pairs. 12519 records in RAM.
INFO 2026-06-08 09:30:43 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 2s. Last read position: chr2:237,336,152
INFO 2026-06-08 09:30:43 MarkDuplicates Tracking 1258325 as yet unmatched pairs. 13660 records in RAM.
INFO 2026-06-08 09:30:45 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:237,365,711
INFO 2026-06-08 09:30:45 MarkDuplicates Tracking 1252170 as yet unmatched pairs. 7503 records in RAM.
INFO 2026-06-08 09:30:47 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 2s. Last read position: chr2:237,394,757
INFO 2026-06-08 09:30:47 MarkDuplicates Tracking 1251060 as yet unmatched pairs. 6389 records in RAM.
INFO 2026-06-08 09:30:49 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 2s. Last read position: chr2:241,256,783
INFO 2026-06-08 09:30:49 MarkDuplicates Tracking 1245900 as yet unmatched pairs. 1228 records in RAM.
INFO 2026-06-08 09:30:52 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 2s. Last read position: chr3:9,869,938
INFO 2026-06-08 09:30:52 MarkDuplicates Tracking 1242876 as yet unmatched pairs. 62844 records in RAM.
INFO 2026-06-08 09:30:53 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr3:13,628,940
INFO 2026-06-08 09:30:53 MarkDuplicates Tracking 1240385 as yet unmatched pairs. 60339 records in RAM.
INFO 2026-06-08 09:30:56 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 2s. Last read position: chr3:25,733,956
INFO 2026-06-08 09:30:56 MarkDuplicates Tracking 1237020 as yet unmatched pairs. 56972 records in RAM.
INFO 2026-06-08 09:30:58 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr3:37,325,184
INFO 2026-06-08 09:30:58 MarkDuplicates Tracking 1234131 as yet unmatched pairs. 54081 records in RAM.
INFO 2026-06-08 09:31:00 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 2s. Last read position: chr3:42,639,385
INFO 2026-06-08 09:31:00 MarkDuplicates Tracking 1231747 as yet unmatched pairs. 51696 records in RAM.
INFO 2026-06-08 09:31:02 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 2s. Last read position: chr3:47,501,804
INFO 2026-06-08 09:31:02 MarkDuplicates Tracking 1228355 as yet unmatched pairs. 48304 records in RAM.
INFO 2026-06-08 09:31:04 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 2s. Last read position: chr3:49,022,424
INFO 2026-06-08 09:31:04 MarkDuplicates Tracking 1225563 as yet unmatched pairs. 45509 records in RAM.
INFO 2026-06-08 09:31:06 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:49,704,708
INFO 2026-06-08 09:31:06 MarkDuplicates Tracking 1222532 as yet unmatched pairs. 42473 records in RAM.
INFO 2026-06-08 09:31:08 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 2s. Last read position: chr3:52,223,508
INFO 2026-06-08 09:31:08 MarkDuplicates Tracking 1219853 as yet unmatched pairs. 39784 records in RAM.
INFO 2026-06-08 09:31:10 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 2s. Last read position: chr3:53,660,221
INFO 2026-06-08 09:31:10 MarkDuplicates Tracking 1216679 as yet unmatched pairs. 36607 records in RAM.
INFO 2026-06-08 09:31:12 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:65,356,985
INFO 2026-06-08 09:31:12 MarkDuplicates Tracking 1214126 as yet unmatched pairs. 34052 records in RAM.
INFO 2026-06-08 09:31:14 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 2s. Last read position: chr3:94,063,092
INFO 2026-06-08 09:31:14 MarkDuplicates Tracking 1211396 as yet unmatched pairs. 31314 records in RAM.
INFO 2026-06-08 09:31:16 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 2s. Last read position: chr3:101,576,567
INFO 2026-06-08 09:31:16 MarkDuplicates Tracking 1209499 as yet unmatched pairs. 29415 records in RAM.
INFO 2026-06-08 09:31:19 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 2s. Last read position: chr3:112,638,835
INFO 2026-06-08 09:31:19 MarkDuplicates Tracking 1208803 as yet unmatched pairs. 28719 records in RAM.
INFO 2026-06-08 09:31:21 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 2s. Last read position: chr3:119,480,155
INFO 2026-06-08 09:31:21 MarkDuplicates Tracking 1204177 as yet unmatched pairs. 24090 records in RAM.
INFO 2026-06-08 09:31:23 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 2s. Last read position: chr3:124,562,929
INFO 2026-06-08 09:31:23 MarkDuplicates Tracking 1201358 as yet unmatched pairs. 21271 records in RAM.
INFO 2026-06-08 09:31:25 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:129,272,383
INFO 2026-06-08 09:31:25 MarkDuplicates Tracking 1198516 as yet unmatched pairs. 18420 records in RAM.
INFO 2026-06-08 09:31:27 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 2s. Last read position: chr3:135,201,662
INFO 2026-06-08 09:31:27 MarkDuplicates Tracking 1195549 as yet unmatched pairs. 15428 records in RAM.
INFO 2026-06-08 09:31:29 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 2s. Last read position: chr3:149,520,864
INFO 2026-06-08 09:31:29 MarkDuplicates Tracking 1193850 as yet unmatched pairs. 13726 records in RAM.
INFO 2026-06-08 09:31:31 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:160,303,977
INFO 2026-06-08 09:31:31 MarkDuplicates Tracking 1190462 as yet unmatched pairs. 10329 records in RAM.
INFO 2026-06-08 09:31:33 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 2s. Last read position: chr3:182,366,000
INFO 2026-06-08 09:31:33 MarkDuplicates Tracking 1187899 as yet unmatched pairs. 7758 records in RAM.
INFO 2026-06-08 09:31:35 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 2s. Last read position: chr3:186,581,430
INFO 2026-06-08 09:31:35 MarkDuplicates Tracking 1185329 as yet unmatched pairs. 5183 records in RAM.
INFO 2026-06-08 09:31:37 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:191,375,247
INFO 2026-06-08 09:31:37 MarkDuplicates Tracking 1183281 as yet unmatched pairs. 3135 records in RAM.
INFO 2026-06-08 09:31:39 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 2s. Last read position: chr3:197,700,801
INFO 2026-06-08 09:31:39 MarkDuplicates Tracking 1180952 as yet unmatched pairs. 804 records in RAM.
INFO 2026-06-08 09:31:42 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 2s. Last read position: chr4:2,261,723
INFO 2026-06-08 09:31:42 MarkDuplicates Tracking 1177628 as yet unmatched pairs. 35411 records in RAM.
INFO 2026-06-08 09:31:44 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 2s. Last read position: chr4:7,774,842
INFO 2026-06-08 09:31:44 MarkDuplicates Tracking 1174525 as yet unmatched pairs. 32306 records in RAM.
INFO 2026-06-08 09:31:46 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr4:24,799,595
INFO 2026-06-08 09:31:46 MarkDuplicates Tracking 1171833 as yet unmatched pairs. 29594 records in RAM.
INFO 2026-06-08 09:31:48 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 2s. Last read position: chr4:47,512,717
INFO 2026-06-08 09:31:48 MarkDuplicates Tracking 1169055 as yet unmatched pairs. 26800 records in RAM.
INFO 2026-06-08 09:31:50 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 2s. Last read position: chr4:57,040,513
INFO 2026-06-08 09:31:50 MarkDuplicates Tracking 1166764 as yet unmatched pairs. 24491 records in RAM.
INFO 2026-06-08 09:31:52 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr4:77,048,328
INFO 2026-06-08 09:31:52 MarkDuplicates Tracking 1164410 as yet unmatched pairs. 22134 records in RAM.
INFO 2026-06-08 09:31:54 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 2s. Last read position: chr4:86,950,049
INFO 2026-06-08 09:31:54 MarkDuplicates Tracking 1161265 as yet unmatched pairs. 18970 records in RAM.
INFO 2026-06-08 09:31:56 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 2s. Last read position: chr4:98,891,307
INFO 2026-06-08 09:31:56 MarkDuplicates Tracking 1158752 as yet unmatched pairs. 16455 records in RAM.
INFO 2026-06-08 09:31:58 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:109,766,708
INFO 2026-06-08 09:31:58 MarkDuplicates Tracking 1156245 as yet unmatched pairs. 13943 records in RAM.
INFO 2026-06-08 09:32:00 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 2s. Last read position: chr4:122,247,172
INFO 2026-06-08 09:32:00 MarkDuplicates Tracking 1153879 as yet unmatched pairs. 11574 records in RAM.
INFO 2026-06-08 09:32:02 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 2s. Last read position: chr4:140,967,854
INFO 2026-06-08 09:32:02 MarkDuplicates Tracking 1151240 as yet unmatched pairs. 8923 records in RAM.
INFO 2026-06-08 09:32:03 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr4:153,781,409
INFO 2026-06-08 09:32:03 MarkDuplicates Tracking 1150473 as yet unmatched pairs. 8143 records in RAM.
INFO 2026-06-08 09:32:05 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 2s. Last read position: chr4:163,528,778
INFO 2026-06-08 09:32:05 MarkDuplicates Tracking 1145827 as yet unmatched pairs. 3490 records in RAM.
INFO 2026-06-08 09:32:08 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 2s. Last read position: chr4:186,596,709
INFO 2026-06-08 09:32:08 MarkDuplicates Tracking 1143104 as yet unmatched pairs. 767 records in RAM.
INFO 2026-06-08 09:32:10 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 2s. Last read position: chr5:14,291,174
INFO 2026-06-08 09:32:10 MarkDuplicates Tracking 1141724 as yet unmatched pairs. 64878 records in RAM.
INFO 2026-06-08 09:32:13 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 2s. Last read position: chr5:14,508,294
INFO 2026-06-08 09:32:13 MarkDuplicates Tracking 1138628 as yet unmatched pairs. 61782 records in RAM.
INFO 2026-06-08 09:32:15 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 2s. Last read position: chr5:38,418,206
INFO 2026-06-08 09:32:15 MarkDuplicates Tracking 1134400 as yet unmatched pairs. 57552 records in RAM.
INFO 2026-06-08 09:32:17 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 2s. Last read position: chr5:52,945,002
INFO 2026-06-08 09:32:17 MarkDuplicates Tracking 1132249 as yet unmatched pairs. 55388 records in RAM.
INFO 2026-06-08 09:32:19 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr5:67,164,458
INFO 2026-06-08 09:32:19 MarkDuplicates Tracking 1129622 as yet unmatched pairs. 52757 records in RAM.
INFO 2026-06-08 09:32:21 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr5:72,896,486
INFO 2026-06-08 09:32:21 MarkDuplicates Tracking 1128004 as yet unmatched pairs. 51139 records in RAM.
INFO 2026-06-08 09:32:23 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 2s. Last read position: chr5:81,474,534
INFO 2026-06-08 09:32:23 MarkDuplicates Tracking 1125314 as yet unmatched pairs. 48442 records in RAM.
INFO 2026-06-08 09:32:25 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr5:93,683,343
INFO 2026-06-08 09:32:25 MarkDuplicates Tracking 1123002 as yet unmatched pairs. 46115 records in RAM.
INFO 2026-06-08 09:32:27 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 2s. Last read position: chr5:112,841,509
INFO 2026-06-08 09:32:27 MarkDuplicates Tracking 1120252 as yet unmatched pairs. 43364 records in RAM.
INFO 2026-06-08 09:32:29 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 2s. Last read position: chr5:132,758,437
INFO 2026-06-08 09:32:29 MarkDuplicates Tracking 1117843 as yet unmatched pairs. 40947 records in RAM.
INFO 2026-06-08 09:32:31 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:138,465,740
INFO 2026-06-08 09:32:31 MarkDuplicates Tracking 1115571 as yet unmatched pairs. 38674 records in RAM.
INFO 2026-06-08 09:32:33 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:139,322,734
INFO 2026-06-08 09:32:33 MarkDuplicates Tracking 1112510 as yet unmatched pairs. 35609 records in RAM.
INFO 2026-06-08 09:32:35 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr5:141,350,621
INFO 2026-06-08 09:32:35 MarkDuplicates Tracking 1109947 as yet unmatched pairs. 32981 records in RAM.
INFO 2026-06-08 09:32:37 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 2s. Last read position: chr5:146,130,139
INFO 2026-06-08 09:32:37 MarkDuplicates Tracking 1107360 as yet unmatched pairs. 30388 records in RAM.
INFO 2026-06-08 09:32:39 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 2s. Last read position: chr5:150,121,210
INFO 2026-06-08 09:32:39 MarkDuplicates Tracking 1106148 as yet unmatched pairs. 29176 records in RAM.
INFO 2026-06-08 09:32:41 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 2s. Last read position: chr5:150,402,143
INFO 2026-06-08 09:32:41 MarkDuplicates Tracking 1106746 as yet unmatched pairs. 29774 records in RAM.
INFO 2026-06-08 09:32:43 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 2s. Last read position: chr5:150,405,099
INFO 2026-06-08 09:32:43 MarkDuplicates Tracking 1107626 as yet unmatched pairs. 30653 records in RAM.
INFO 2026-06-08 09:32:45 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:150,407,295
INFO 2026-06-08 09:32:45 MarkDuplicates Tracking 1096263 as yet unmatched pairs. 19289 records in RAM.
INFO 2026-06-08 09:32:47 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 2s. Last read position: chr5:151,663,530
INFO 2026-06-08 09:32:47 MarkDuplicates Tracking 1099308 as yet unmatched pairs. 22333 records in RAM.
INFO 2026-06-08 09:32:49 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 2s. Last read position: chr5:158,995,185
INFO 2026-06-08 09:32:49 MarkDuplicates Tracking 1090359 as yet unmatched pairs. 13384 records in RAM.
INFO 2026-06-08 09:32:51 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:171,392,957
INFO 2026-06-08 09:32:51 MarkDuplicates Tracking 1089602 as yet unmatched pairs. 12625 records in RAM.
INFO 2026-06-08 09:32:53 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 2s. Last read position: chr5:177,022,879
INFO 2026-06-08 09:32:53 MarkDuplicates Tracking 1084678 as yet unmatched pairs. 7695 records in RAM.
INFO 2026-06-08 09:32:55 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 2s. Last read position: chr5:179,617,995
INFO 2026-06-08 09:32:55 MarkDuplicates Tracking 1082008 as yet unmatched pairs. 5021 records in RAM.
INFO 2026-06-08 09:32:57 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 2s. Last read position: chr5:179,893,285
INFO 2026-06-08 09:32:57 MarkDuplicates Tracking 1079149 as yet unmatched pairs. 2160 records in RAM.
INFO 2026-06-08 09:33:00 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 2s. Last read position: chr6:4,130,417
INFO 2026-06-08 09:33:00 MarkDuplicates Tracking 1076524 as yet unmatched pairs. 69782 records in RAM.
INFO 2026-06-08 09:33:02 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 2s. Last read position: chr6:11,193,651
INFO 2026-06-08 09:33:02 MarkDuplicates Tracking 1073604 as yet unmatched pairs. 66861 records in RAM.
INFO 2026-06-08 09:33:04 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 2s. Last read position: chr6:26,196,968
INFO 2026-06-08 09:33:04 MarkDuplicates Tracking 1070767 as yet unmatched pairs. 64020 records in RAM.
INFO 2026-06-08 09:33:06 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr6:30,583,700
INFO 2026-06-08 09:33:06 MarkDuplicates Tracking 1067979 as yet unmatched pairs. 61230 records in RAM.
INFO 2026-06-08 09:33:08 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 2s. Last read position: chr6:31,627,959
INFO 2026-06-08 09:33:08 MarkDuplicates Tracking 1065455 as yet unmatched pairs. 58706 records in RAM.
INFO 2026-06-08 09:33:10 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:31,816,010
INFO 2026-06-08 09:33:10 MarkDuplicates Tracking 1063600 as yet unmatched pairs. 56851 records in RAM.
INFO 2026-06-08 09:33:11 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:31,817,112
INFO 2026-06-08 09:33:11 MarkDuplicates Tracking 1063994 as yet unmatched pairs. 57245 records in RAM.
INFO 2026-06-08 09:33:13 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:31,828,353
INFO 2026-06-08 09:33:13 MarkDuplicates Tracking 1067354 as yet unmatched pairs. 60605 records in RAM.
INFO 2026-06-08 09:33:15 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 2s. Last read position: chr6:31,829,376
INFO 2026-06-08 09:33:15 MarkDuplicates Tracking 1066611 as yet unmatched pairs. 59862 records in RAM.
INFO 2026-06-08 09:33:17 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr6:32,025,145
INFO 2026-06-08 09:33:17 MarkDuplicates Tracking 1056737 as yet unmatched pairs. 49977 records in RAM.
INFO 2026-06-08 09:33:19 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:32,068,442
INFO 2026-06-08 09:33:19 MarkDuplicates Tracking 1054555 as yet unmatched pairs. 47786 records in RAM.
INFO 2026-06-08 09:33:21 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 2s. Last read position: chr6:32,222,748
INFO 2026-06-08 09:33:21 MarkDuplicates Tracking 1049802 as yet unmatched pairs. 43033 records in RAM.
INFO 2026-06-08 09:33:23 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 2s. Last read position: chr6:33,296,210
INFO 2026-06-08 09:33:23 MarkDuplicates Tracking 1047160 as yet unmatched pairs. 40390 records in RAM.
INFO 2026-06-08 09:33:25 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 2s. Last read position: chr6:35,575,840
INFO 2026-06-08 09:33:25 MarkDuplicates Tracking 1044292 as yet unmatched pairs. 37518 records in RAM.
INFO 2026-06-08 09:33:27 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr6:42,984,657
INFO 2026-06-08 09:33:27 MarkDuplicates Tracking 1041326 as yet unmatched pairs. 34549 records in RAM.
INFO 2026-06-08 09:33:29 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 2s. Last read position: chr6:46,858,605
INFO 2026-06-08 09:33:29 MarkDuplicates Tracking 1038715 as yet unmatched pairs. 31927 records in RAM.
INFO 2026-06-08 09:33:31 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:56,648,635
INFO 2026-06-08 09:33:31 MarkDuplicates Tracking 1036467 as yet unmatched pairs. 29647 records in RAM.
INFO 2026-06-08 09:33:33 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 2s. Last read position: chr6:75,644,048
INFO 2026-06-08 09:33:33 MarkDuplicates Tracking 1033487 as yet unmatched pairs. 26650 records in RAM.
INFO 2026-06-08 09:33:35 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 2s. Last read position: chr6:89,343,730
INFO 2026-06-08 09:33:35 MarkDuplicates Tracking 1030921 as yet unmatched pairs. 24079 records in RAM.
INFO 2026-06-08 09:33:37 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 2s. Last read position: chr6:109,441,123
INFO 2026-06-08 09:33:37 MarkDuplicates Tracking 1028272 as yet unmatched pairs. 21423 records in RAM.
INFO 2026-06-08 09:33:39 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 2s. Last read position: chr6:118,558,938
INFO 2026-06-08 09:33:39 MarkDuplicates Tracking 1026084 as yet unmatched pairs. 19227 records in RAM.
INFO 2026-06-08 09:33:41 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 2s. Last read position: chr6:131,949,988
INFO 2026-06-08 09:33:41 MarkDuplicates Tracking 1024583 as yet unmatched pairs. 17711 records in RAM.
INFO 2026-06-08 09:33:43 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 2s. Last read position: chr6:139,373,521
INFO 2026-06-08 09:33:43 MarkDuplicates Tracking 1020218 as yet unmatched pairs. 13340 records in RAM.
INFO 2026-06-08 09:33:45 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:149,378,946
INFO 2026-06-08 09:33:45 MarkDuplicates Tracking 1018093 as yet unmatched pairs. 11206 records in RAM.
INFO 2026-06-08 09:33:47 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:151,944,356
INFO 2026-06-08 09:33:47 MarkDuplicates Tracking 1015588 as yet unmatched pairs. 8701 records in RAM.
INFO 2026-06-08 09:33:49 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 2s. Last read position: chr6:158,767,465
INFO 2026-06-08 09:33:49 MarkDuplicates Tracking 1012965 as yet unmatched pairs. 6056 records in RAM.
INFO 2026-06-08 09:33:51 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr6:163,563,588
INFO 2026-06-08 09:33:51 MarkDuplicates Tracking 1010774 as yet unmatched pairs. 3864 records in RAM.
INFO 2026-06-08 09:33:54 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 2s. Last read position: chr6:170,391,112
INFO 2026-06-08 09:33:54 MarkDuplicates Tracking 1007057 as yet unmatched pairs. 139 records in RAM.
INFO 2026-06-08 09:33:56 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 2s. Last read position: chr7:5,315,037
INFO 2026-06-08 09:33:56 MarkDuplicates Tracking 1004329 as yet unmatched pairs. 68326 records in RAM.
INFO 2026-06-08 09:33:58 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,275
INFO 2026-06-08 09:33:58 MarkDuplicates Tracking 1010076 as yet unmatched pairs. 74069 records in RAM.
INFO 2026-06-08 09:34:00 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 2s. Last read position: chr7:19,116,776
INFO 2026-06-08 09:34:00 MarkDuplicates Tracking 998537 as yet unmatched pairs. 62522 records in RAM.
INFO 2026-06-08 09:34:02 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 2s. Last read position: chr7:30,912,231
INFO 2026-06-08 09:34:02 MarkDuplicates Tracking 995907 as yet unmatched pairs. 59892 records in RAM.
INFO 2026-06-08 09:34:04 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:41,965,957
INFO 2026-06-08 09:34:04 MarkDuplicates Tracking 992973 as yet unmatched pairs. 56955 records in RAM.
INFO 2026-06-08 09:34:06 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 2s. Last read position: chr7:44,113,727
INFO 2026-06-08 09:34:06 MarkDuplicates Tracking 990828 as yet unmatched pairs. 54808 records in RAM.
INFO 2026-06-08 09:34:08 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 2s. Last read position: chr7:55,161,589
INFO 2026-06-08 09:34:08 MarkDuplicates Tracking 988956 as yet unmatched pairs. 52929 records in RAM.
INFO 2026-06-08 09:34:10 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr7:72,942,474
INFO 2026-06-08 09:34:10 MarkDuplicates Tracking 985521 as yet unmatched pairs. 49483 records in RAM.
INFO 2026-06-08 09:34:12 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:74,338,698
INFO 2026-06-08 09:34:12 MarkDuplicates Tracking 983413 as yet unmatched pairs. 47371 records in RAM.
INFO 2026-06-08 09:34:14 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:76,054,918
INFO 2026-06-08 09:34:14 MarkDuplicates Tracking 982052 as yet unmatched pairs. 46010 records in RAM.
INFO 2026-06-08 09:34:15 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:80,674,015
INFO 2026-06-08 09:34:15 MarkDuplicates Tracking 980607 as yet unmatched pairs. 44564 records in RAM.
INFO 2026-06-08 09:34:18 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 2s. Last read position: chr7:92,095,131
INFO 2026-06-08 09:34:18 MarkDuplicates Tracking 977124 as yet unmatched pairs. 41081 records in RAM.
INFO 2026-06-08 09:34:20 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:94,404,850
INFO 2026-06-08 09:34:20 MarkDuplicates Tracking 990607 as yet unmatched pairs. 54564 records in RAM.
INFO 2026-06-08 09:34:22 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 2s. Last read position: chr7:94,410,456
INFO 2026-06-08 09:34:22 MarkDuplicates Tracking 983360 as yet unmatched pairs. 47312 records in RAM.
INFO 2026-06-08 09:34:24 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 2s. Last read position: chr7:94,418,498
INFO 2026-06-08 09:34:24 MarkDuplicates Tracking 978866 as yet unmatched pairs. 42818 records in RAM.
INFO 2026-06-08 09:34:26 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:94,425,811
INFO 2026-06-08 09:34:26 MarkDuplicates Tracking 969037 as yet unmatched pairs. 32987 records in RAM.
INFO 2026-06-08 09:34:28 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 2s. Last read position: chr7:95,406,148
INFO 2026-06-08 09:34:28 MarkDuplicates Tracking 962117 as yet unmatched pairs. 26064 records in RAM.
INFO 2026-06-08 09:34:31 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 2s. Last read position: chr7:100,023,632
INFO 2026-06-08 09:34:31 MarkDuplicates Tracking 959215 as yet unmatched pairs. 23160 records in RAM.
INFO 2026-06-08 09:34:32 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr7:100,822,482
INFO 2026-06-08 09:34:32 MarkDuplicates Tracking 956510 as yet unmatched pairs. 20452 records in RAM.
INFO 2026-06-08 09:34:34 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr7:102,654,974
INFO 2026-06-08 09:34:34 MarkDuplicates Tracking 954820 as yet unmatched pairs. 18759 records in RAM.
INFO 2026-06-08 09:34:36 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 2s. Last read position: chr7:108,001,664
INFO 2026-06-08 09:34:36 MarkDuplicates Tracking 952884 as yet unmatched pairs. 16809 records in RAM.
INFO 2026-06-08 09:34:38 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr7:127,844,371
INFO 2026-06-08 09:34:38 MarkDuplicates Tracking 950854 as yet unmatched pairs. 14761 records in RAM.
INFO 2026-06-08 09:34:40 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 2s. Last read position: chr7:134,928,805
INFO 2026-06-08 09:34:40 MarkDuplicates Tracking 947815 as yet unmatched pairs. 11719 records in RAM.
INFO 2026-06-08 09:34:42 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr7:139,583,918
INFO 2026-06-08 09:34:42 MarkDuplicates Tracking 944600 as yet unmatched pairs. 8493 records in RAM.
INFO 2026-06-08 09:34:44 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 2s. Last read position: chr7:143,810,697
INFO 2026-06-08 09:34:44 MarkDuplicates Tracking 941786 as yet unmatched pairs. 5678 records in RAM.
INFO 2026-06-08 09:34:46 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 2s. Last read position: chr7:151,118,587
INFO 2026-06-08 09:34:46 MarkDuplicates Tracking 938984 as yet unmatched pairs. 2839 records in RAM.
INFO 2026-06-08 09:34:49 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 2s. Last read position: chr8:715,917
INFO 2026-06-08 09:34:49 MarkDuplicates Tracking 936112 as yet unmatched pairs. 42623 records in RAM.
INFO 2026-06-08 09:34:51 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr8:17,554,679
INFO 2026-06-08 09:34:51 MarkDuplicates Tracking 933575 as yet unmatched pairs. 40076 records in RAM.
INFO 2026-06-08 09:34:53 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 2s. Last read position: chr8:22,606,919
INFO 2026-06-08 09:34:53 MarkDuplicates Tracking 931433 as yet unmatched pairs. 37913 records in RAM.
INFO 2026-06-08 09:34:55 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr8:28,527,983
INFO 2026-06-08 09:34:55 MarkDuplicates Tracking 927886 as yet unmatched pairs. 34365 records in RAM.
INFO 2026-06-08 09:34:57 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 2s. Last read position: chr8:38,278,306
INFO 2026-06-08 09:34:57 MarkDuplicates Tracking 925758 as yet unmatched pairs. 32237 records in RAM.
INFO 2026-06-08 09:34:59 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 2s. Last read position: chr8:38,819,957
INFO 2026-06-08 09:34:59 MarkDuplicates Tracking 929380 as yet unmatched pairs. 35858 records in RAM.
INFO 2026-06-08 09:35:01 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr8:47,735,376
INFO 2026-06-08 09:35:01 MarkDuplicates Tracking 919976 as yet unmatched pairs. 26452 records in RAM.
INFO 2026-06-08 09:35:03 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 2s. Last read position: chr8:64,581,663
INFO 2026-06-08 09:35:03 MarkDuplicates Tracking 916577 as yet unmatched pairs. 23053 records in RAM.
INFO 2026-06-08 09:35:05 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 2s. Last read position: chr8:76,854,008
INFO 2026-06-08 09:35:05 MarkDuplicates Tracking 914254 as yet unmatched pairs. 20729 records in RAM.
INFO 2026-06-08 09:35:07 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr8:96,785,302
INFO 2026-06-08 09:35:07 MarkDuplicates Tracking 911702 as yet unmatched pairs. 18176 records in RAM.
INFO 2026-06-08 09:35:09 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 2s. Last read position: chr8:102,327,764
INFO 2026-06-08 09:35:09 MarkDuplicates Tracking 908817 as yet unmatched pairs. 15289 records in RAM.
INFO 2026-06-08 09:35:11 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 2s. Last read position: chr8:120,158,131
INFO 2026-06-08 09:35:11 MarkDuplicates Tracking 907769 as yet unmatched pairs. 14237 records in RAM.
INFO 2026-06-08 09:35:13 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,834
INFO 2026-06-08 09:35:13 MarkDuplicates Tracking 905673 as yet unmatched pairs. 12136 records in RAM.
INFO 2026-06-08 09:35:15 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 2s. Last read position: chr8:143,579,729
INFO 2026-06-08 09:35:15 MarkDuplicates Tracking 900851 as yet unmatched pairs. 7310 records in RAM.
INFO 2026-06-08 09:35:17 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 1s. Last read position: chr8:143,924,499
INFO 2026-06-08 09:35:17 MarkDuplicates Tracking 897566 as yet unmatched pairs. 4010 records in RAM.
INFO 2026-06-08 09:35:19 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 2s. Last read position: chr8:144,842,640
INFO 2026-06-08 09:35:19 MarkDuplicates Tracking 893843 as yet unmatched pairs. 282 records in RAM.
INFO 2026-06-08 09:35:21 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 2s. Last read position: chr9:13,247,620
INFO 2026-06-08 09:35:21 MarkDuplicates Tracking 891165 as yet unmatched pairs. 47419 records in RAM.
INFO 2026-06-08 09:35:23 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr9:19,376,556
INFO 2026-06-08 09:35:23 MarkDuplicates Tracking 888948 as yet unmatched pairs. 45197 records in RAM.
INFO 2026-06-08 09:35:25 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 2s. Last read position: chr9:35,074,201
INFO 2026-06-08 09:35:25 MarkDuplicates Tracking 885786 as yet unmatched pairs. 42035 records in RAM.
INFO 2026-06-08 09:35:27 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr9:37,500,878
INFO 2026-06-08 09:35:27 MarkDuplicates Tracking 882735 as yet unmatched pairs. 38972 records in RAM.
INFO 2026-06-08 09:35:29 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr9:73,158,731
INFO 2026-06-08 09:35:29 MarkDuplicates Tracking 881658 as yet unmatched pairs. 37893 records in RAM.
INFO 2026-06-08 09:35:31 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 2s. Last read position: chr9:88,461,007
INFO 2026-06-08 09:35:31 MarkDuplicates Tracking 878162 as yet unmatched pairs. 34385 records in RAM.
INFO 2026-06-08 09:35:33 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr9:95,881,168
INFO 2026-06-08 09:35:33 MarkDuplicates Tracking 875624 as yet unmatched pairs. 31841 records in RAM.
INFO 2026-06-08 09:35:35 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 2s. Last read position: chr9:105,526,445
INFO 2026-06-08 09:35:35 MarkDuplicates Tracking 872863 as yet unmatched pairs. 29079 records in RAM.
INFO 2026-06-08 09:35:37 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr9:113,207,273
INFO 2026-06-08 09:35:37 MarkDuplicates Tracking 870566 as yet unmatched pairs. 26782 records in RAM.
INFO 2026-06-08 09:35:39 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 2s. Last read position: chr9:121,157,871
INFO 2026-06-08 09:35:39 MarkDuplicates Tracking 867628 as yet unmatched pairs. 23843 records in RAM.
INFO 2026-06-08 09:35:41 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 2s. Last read position: chr9:124,875,003
INFO 2026-06-08 09:35:41 MarkDuplicates Tracking 864591 as yet unmatched pairs. 20800 records in RAM.
INFO 2026-06-08 09:35:43 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr9:127,945,516
INFO 2026-06-08 09:35:43 MarkDuplicates Tracking 862086 as yet unmatched pairs. 18292 records in RAM.
INFO 2026-06-08 09:35:45 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 2s. Last read position: chr9:128,907,403
INFO 2026-06-08 09:35:45 MarkDuplicates Tracking 858992 as yet unmatched pairs. 15198 records in RAM.
INFO 2026-06-08 09:35:47 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 2s. Last read position: chr9:131,144,392
INFO 2026-06-08 09:35:47 MarkDuplicates Tracking 856290 as yet unmatched pairs. 12495 records in RAM.
INFO 2026-06-08 09:35:49 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr9:133,363,502
INFO 2026-06-08 09:35:49 MarkDuplicates Tracking 853899 as yet unmatched pairs. 10102 records in RAM.
INFO 2026-06-08 09:35:51 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 2s. Last read position: chr9:134,822,128
INFO 2026-06-08 09:35:51 MarkDuplicates Tracking 851113 as yet unmatched pairs. 7316 records in RAM.
INFO 2026-06-08 09:35:53 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 2s. Last read position: chr9:136,839,003
INFO 2026-06-08 09:35:53 MarkDuplicates Tracking 847444 as yet unmatched pairs. 3647 records in RAM.
INFO 2026-06-08 09:35:56 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 2s. Last read position: chr10:249,038
INFO 2026-06-08 09:35:56 MarkDuplicates Tracking 844379 as yet unmatched pairs. 44508 records in RAM.
INFO 2026-06-08 09:35:58 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 2s. Last read position: chr10:8,058,519
INFO 2026-06-08 09:35:58 MarkDuplicates Tracking 841641 as yet unmatched pairs. 41764 records in RAM.
INFO 2026-06-08 09:35:59 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr10:17,236,293
INFO 2026-06-08 09:35:59 MarkDuplicates Tracking 844867 as yet unmatched pairs. 44990 records in RAM.
INFO 2026-06-08 09:36:02 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 2s. Last read position: chr10:27,035,140
INFO 2026-06-08 09:36:02 MarkDuplicates Tracking 835736 as yet unmatched pairs. 35856 records in RAM.
INFO 2026-06-08 09:36:04 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 2s. Last read position: chr10:32,269,111
INFO 2026-06-08 09:36:04 MarkDuplicates Tracking 833708 as yet unmatched pairs. 33813 records in RAM.
INFO 2026-06-08 09:36:06 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr10:37,216,189
INFO 2026-06-08 09:36:06 MarkDuplicates Tracking 832537 as yet unmatched pairs. 32637 records in RAM.
INFO 2026-06-08 09:36:08 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 2s. Last read position: chr10:45,826,920
INFO 2026-06-08 09:36:08 MarkDuplicates Tracking 828589 as yet unmatched pairs. 28679 records in RAM.
INFO 2026-06-08 09:36:09 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr10:50,129,871
INFO 2026-06-08 09:36:09 MarkDuplicates Tracking 826385 as yet unmatched pairs. 26474 records in RAM.
INFO 2026-06-08 09:36:11 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr10:63,465,509
INFO 2026-06-08 09:36:11 MarkDuplicates Tracking 823933 as yet unmatched pairs. 24003 records in RAM.
INFO 2026-06-08 09:36:13 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 2s. Last read position: chr10:73,383,211
INFO 2026-06-08 09:36:13 MarkDuplicates Tracking 821476 as yet unmatched pairs. 21545 records in RAM.
INFO 2026-06-08 09:36:15 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr10:78,037,199
INFO 2026-06-08 09:36:15 MarkDuplicates Tracking 820349 as yet unmatched pairs. 20413 records in RAM.
INFO 2026-06-08 09:36:17 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 2s. Last read position: chr10:87,894,034
INFO 2026-06-08 09:36:17 MarkDuplicates Tracking 817014 as yet unmatched pairs. 17076 records in RAM.
INFO 2026-06-08 09:36:19 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 2s. Last read position: chr10:95,839,746
INFO 2026-06-08 09:36:19 MarkDuplicates Tracking 813806 as yet unmatched pairs. 13868 records in RAM.
INFO 2026-06-08 09:36:21 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr10:101,034,818
INFO 2026-06-08 09:36:21 MarkDuplicates Tracking 811111 as yet unmatched pairs. 11169 records in RAM.
INFO 2026-06-08 09:36:24 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 2s. Last read position: chr10:103,897,593
INFO 2026-06-08 09:36:24 MarkDuplicates Tracking 808183 as yet unmatched pairs. 8229 records in RAM.
INFO 2026-06-08 09:36:26 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 2s. Last read position: chr10:116,927,867
INFO 2026-06-08 09:36:26 MarkDuplicates Tracking 806597 as yet unmatched pairs. 6627 records in RAM.
INFO 2026-06-08 09:36:28 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr10:123,157,854
INFO 2026-06-08 09:36:28 MarkDuplicates Tracking 802884 as yet unmatched pairs. 2908 records in RAM.
INFO 2026-06-08 09:36:31 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 2s. Last read position: chr11:233,138
INFO 2026-06-08 09:36:31 MarkDuplicates Tracking 799990 as yet unmatched pairs. 75994 records in RAM.
INFO 2026-06-08 09:36:33 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr11:755,904
INFO 2026-06-08 09:36:33 MarkDuplicates Tracking 797269 as yet unmatched pairs. 73266 records in RAM.
INFO 2026-06-08 09:36:35 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 2s. Last read position: chr11:1,922,863
INFO 2026-06-08 09:36:35 MarkDuplicates Tracking 793944 as yet unmatched pairs. 69922 records in RAM.
INFO 2026-06-08 09:36:37 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 2s. Last read position: chr11:6,556,690
INFO 2026-06-08 09:36:37 MarkDuplicates Tracking 790800 as yet unmatched pairs. 66778 records in RAM.
INFO 2026-06-08 09:36:39 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr11:9,856,513
INFO 2026-06-08 09:36:39 MarkDuplicates Tracking 787994 as yet unmatched pairs. 63972 records in RAM.
INFO 2026-06-08 09:36:41 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 2s. Last read position: chr11:17,995,839
INFO 2026-06-08 09:36:41 MarkDuplicates Tracking 785184 as yet unmatched pairs. 61162 records in RAM.
INFO 2026-06-08 09:36:43 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 2s. Last read position: chr11:35,189,996
INFO 2026-06-08 09:36:43 MarkDuplicates Tracking 782635 as yet unmatched pairs. 58612 records in RAM.
INFO 2026-06-08 09:36:45 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr11:46,545,752
INFO 2026-06-08 09:36:45 MarkDuplicates Tracking 779703 as yet unmatched pairs. 55679 records in RAM.
INFO 2026-06-08 09:36:47 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 2s. Last read position: chr11:57,410,011
INFO 2026-06-08 09:36:47 MarkDuplicates Tracking 777117 as yet unmatched pairs. 53093 records in RAM.
INFO 2026-06-08 09:36:49 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr11:59,781,405
INFO 2026-06-08 09:36:49 MarkDuplicates Tracking 774265 as yet unmatched pairs. 50241 records in RAM.
INFO 2026-06-08 09:36:51 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 2s. Last read position: chr11:62,518,032
INFO 2026-06-08 09:36:51 MarkDuplicates Tracking 772867 as yet unmatched pairs. 48834 records in RAM.
INFO 2026-06-08 09:36:53 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 2s. Last read position: chr11:62,525,688
INFO 2026-06-08 09:36:53 MarkDuplicates Tracking 770793 as yet unmatched pairs. 46758 records in RAM.
INFO 2026-06-08 09:36:55 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr11:62,531,936
INFO 2026-06-08 09:36:55 MarkDuplicates Tracking 768028 as yet unmatched pairs. 43991 records in RAM.
INFO 2026-06-08 09:36:57 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 2s. Last read position: chr11:62,888,485
INFO 2026-06-08 09:36:57 MarkDuplicates Tracking 764210 as yet unmatched pairs. 40173 records in RAM.
INFO 2026-06-08 09:36:59 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr11:64,914,379
INFO 2026-06-08 09:36:59 MarkDuplicates Tracking 760498 as yet unmatched pairs. 36460 records in RAM.
INFO 2026-06-08 09:37:01 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 2s. Last read position: chr11:65,599,565
INFO 2026-06-08 09:37:01 MarkDuplicates Tracking 757507 as yet unmatched pairs. 33457 records in RAM.
INFO 2026-06-08 09:37:03 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 2s. Last read position: chr11:66,315,238
INFO 2026-06-08 09:37:03 MarkDuplicates Tracking 754910 as yet unmatched pairs. 30860 records in RAM.
INFO 2026-06-08 09:37:05 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr11:67,586,153
INFO 2026-06-08 09:37:05 MarkDuplicates Tracking 751520 as yet unmatched pairs. 27470 records in RAM.
INFO 2026-06-08 09:37:07 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 2s. Last read position: chr11:70,485,831
INFO 2026-06-08 09:37:07 MarkDuplicates Tracking 748100 as yet unmatched pairs. 24048 records in RAM.
INFO 2026-06-08 09:37:09 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 2s. Last read position: chr11:73,310,213
INFO 2026-06-08 09:37:09 MarkDuplicates Tracking 745244 as yet unmatched pairs. 21191 records in RAM.
INFO 2026-06-08 09:37:11 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr11:77,323,305
INFO 2026-06-08 09:37:11 MarkDuplicates Tracking 742420 as yet unmatched pairs. 18356 records in RAM.
INFO 2026-06-08 09:37:13 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 2s. Last read position: chr11:94,447,304
INFO 2026-06-08 09:37:13 MarkDuplicates Tracking 739372 as yet unmatched pairs. 15308 records in RAM.
INFO 2026-06-08 09:37:15 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr11:105,034,210
INFO 2026-06-08 09:37:15 MarkDuplicates Tracking 736672 as yet unmatched pairs. 12602 records in RAM.
INFO 2026-06-08 09:37:17 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 2s. Last read position: chr11:116,762,809
INFO 2026-06-08 09:37:17 MarkDuplicates Tracking 734016 as yet unmatched pairs. 9945 records in RAM.
INFO 2026-06-08 09:37:19 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 2s. Last read position: chr11:118,628,231
INFO 2026-06-08 09:37:19 MarkDuplicates Tracking 731457 as yet unmatched pairs. 7386 records in RAM.
INFO 2026-06-08 09:37:21 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr11:121,545,287
INFO 2026-06-08 09:37:21 MarkDuplicates Tracking 728292 as yet unmatched pairs. 4221 records in RAM.
INFO 2026-06-08 09:37:23 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 2s. Last read position: chr11:128,969,620
INFO 2026-06-08 09:37:23 MarkDuplicates Tracking 725656 as yet unmatched pairs. 1584 records in RAM.
INFO 2026-06-08 09:37:26 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 2s. Last read position: chr12:900,475
INFO 2026-06-08 09:37:26 MarkDuplicates Tracking 723117 as yet unmatched pairs. 71337 records in RAM.
INFO 2026-06-08 09:37:28 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 2s. Last read position: chr12:6,232,710
INFO 2026-06-08 09:37:28 MarkDuplicates Tracking 720630 as yet unmatched pairs. 68849 records in RAM.
INFO 2026-06-08 09:37:30 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 2s. Last read position: chr12:6,937,232
INFO 2026-06-08 09:37:30 MarkDuplicates Tracking 718192 as yet unmatched pairs. 66403 records in RAM.
INFO 2026-06-08 09:37:32 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr12:7,488,056
INFO 2026-06-08 09:37:32 MarkDuplicates Tracking 714459 as yet unmatched pairs. 62670 records in RAM.
INFO 2026-06-08 09:37:34 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 2s. Last read position: chr12:10,723,012
INFO 2026-06-08 09:37:34 MarkDuplicates Tracking 712371 as yet unmatched pairs. 60580 records in RAM.
INFO 2026-06-08 09:37:36 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 2s. Last read position: chr12:19,205,420
INFO 2026-06-08 09:37:36 MarkDuplicates Tracking 709577 as yet unmatched pairs. 57783 records in RAM.
INFO 2026-06-08 09:37:38 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr12:32,701,416
INFO 2026-06-08 09:37:38 MarkDuplicates Tracking 707028 as yet unmatched pairs. 55233 records in RAM.
INFO 2026-06-08 09:37:40 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 2s. Last read position: chr12:48,774,054
INFO 2026-06-08 09:37:40 MarkDuplicates Tracking 704819 as yet unmatched pairs. 53013 records in RAM.
INFO 2026-06-08 09:37:42 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr12:49,564,552
INFO 2026-06-08 09:37:42 MarkDuplicates Tracking 702289 as yet unmatched pairs. 50482 records in RAM.
INFO 2026-06-08 09:37:44 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 2s. Last read position: chr12:52,054,381
INFO 2026-06-08 09:37:44 MarkDuplicates Tracking 703000 as yet unmatched pairs. 51193 records in RAM.
INFO 2026-06-08 09:37:46 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 2s. Last read position: chr12:53,063,807
INFO 2026-06-08 09:37:46 MarkDuplicates Tracking 696549 as yet unmatched pairs. 44740 records in RAM.
INFO 2026-06-08 09:37:48 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr12:54,281,458
INFO 2026-06-08 09:37:48 MarkDuplicates Tracking 695518 as yet unmatched pairs. 43706 records in RAM.
INFO 2026-06-08 09:37:50 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 2s. Last read position: chr12:56,094,470
INFO 2026-06-08 09:37:50 MarkDuplicates Tracking 691024 as yet unmatched pairs. 39212 records in RAM.
INFO 2026-06-08 09:37:53 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 2s. Last read position: chr12:56,645,878
INFO 2026-06-08 09:37:53 MarkDuplicates Tracking 688090 as yet unmatched pairs. 36278 records in RAM.
INFO 2026-06-08 09:37:54 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr12:57,145,326
INFO 2026-06-08 09:37:54 MarkDuplicates Tracking 687110 as yet unmatched pairs. 35295 records in RAM.
INFO 2026-06-08 09:37:57 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 2s. Last read position: chr12:57,195,376
INFO 2026-06-08 09:37:57 MarkDuplicates Tracking 684335 as yet unmatched pairs. 32519 records in RAM.
INFO 2026-06-08 09:37:59 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr12:57,606,441
INFO 2026-06-08 09:37:59 MarkDuplicates Tracking 680008 as yet unmatched pairs. 28190 records in RAM.
INFO 2026-06-08 09:38:01 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 2s. Last read position: chr12:68,656,405
INFO 2026-06-08 09:38:01 MarkDuplicates Tracking 677615 as yet unmatched pairs. 25794 records in RAM.
INFO 2026-06-08 09:38:03 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 2s. Last read position: chr12:82,458,231
INFO 2026-06-08 09:38:03 MarkDuplicates Tracking 674708 as yet unmatched pairs. 22876 records in RAM.
INFO 2026-06-08 09:38:05 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr12:92,864,963
INFO 2026-06-08 09:38:05 MarkDuplicates Tracking 672308 as yet unmatched pairs. 20475 records in RAM.
INFO 2026-06-08 09:38:07 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 2s. Last read position: chr12:102,401,151
INFO 2026-06-08 09:38:07 MarkDuplicates Tracking 669755 as yet unmatched pairs. 17919 records in RAM.
INFO 2026-06-08 09:38:09 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr12:109,139,523
INFO 2026-06-08 09:38:09 MarkDuplicates Tracking 668024 as yet unmatched pairs. 16186 records in RAM.
INFO 2026-06-08 09:38:11 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 2s. Last read position: chr12:112,163,069
INFO 2026-06-08 09:38:11 MarkDuplicates Tracking 664561 as yet unmatched pairs. 12721 records in RAM.
INFO 2026-06-08 09:38:13 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 2s. Last read position: chr12:118,214,040
INFO 2026-06-08 09:38:13 MarkDuplicates Tracking 661587 as yet unmatched pairs. 9746 records in RAM.
INFO 2026-06-08 09:38:15 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr12:122,133,369
INFO 2026-06-08 09:38:15 MarkDuplicates Tracking 659491 as yet unmatched pairs. 7645 records in RAM.
INFO 2026-06-08 09:38:17 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 2s. Last read position: chr12:124,348,261
INFO 2026-06-08 09:38:17 MarkDuplicates Tracking 656216 as yet unmatched pairs. 4369 records in RAM.
INFO 2026-06-08 09:38:19 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 2s. Last read position: chr12:132,572,527
INFO 2026-06-08 09:38:19 MarkDuplicates Tracking 653048 as yet unmatched pairs. 1200 records in RAM.
INFO 2026-06-08 09:38:21 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 2s. Last read position: chr13:21,522,607
INFO 2026-06-08 09:38:21 MarkDuplicates Tracking 650416 as yet unmatched pairs. 17212 records in RAM.
INFO 2026-06-08 09:38:23 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 2s. Last read position: chr13:35,476,044
INFO 2026-06-08 09:38:23 MarkDuplicates Tracking 647945 as yet unmatched pairs. 14735 records in RAM.
INFO 2026-06-08 09:38:25 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr13:40,941,042
INFO 2026-06-08 09:38:25 MarkDuplicates Tracking 645202 as yet unmatched pairs. 11991 records in RAM.
INFO 2026-06-08 09:38:27 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 2s. Last read position: chr13:48,473,375
INFO 2026-06-08 09:38:27 MarkDuplicates Tracking 642557 as yet unmatched pairs. 9341 records in RAM.
INFO 2026-06-08 09:38:29 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 2s. Last read position: chr13:79,354,459
INFO 2026-06-08 09:38:29 MarkDuplicates Tracking 640025 as yet unmatched pairs. 6804 records in RAM.
INFO 2026-06-08 09:38:31 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr13:109,785,095
INFO 2026-06-08 09:38:31 MarkDuplicates Tracking 637112 as yet unmatched pairs. 3884 records in RAM.
INFO 2026-06-08 09:38:33 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 2s. Last read position: chr13:113,319,524
INFO 2026-06-08 09:38:33 MarkDuplicates Tracking 634900 as yet unmatched pairs. 1672 records in RAM.
INFO 2026-06-08 09:38:36 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 2s. Last read position: chr14:21,394,185
INFO 2026-06-08 09:38:36 MarkDuplicates Tracking 631278 as yet unmatched pairs. 41134 records in RAM.
INFO 2026-06-08 09:38:38 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr14:23,360,139
INFO 2026-06-08 09:38:38 MarkDuplicates Tracking 628875 as yet unmatched pairs. 38730 records in RAM.
INFO 2026-06-08 09:38:40 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 2s. Last read position: chr14:30,722,515
INFO 2026-06-08 09:38:40 MarkDuplicates Tracking 625667 as yet unmatched pairs. 35519 records in RAM.
INFO 2026-06-08 09:38:42 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr14:49,583,655
INFO 2026-06-08 09:38:42 MarkDuplicates Tracking 623594 as yet unmatched pairs. 33443 records in RAM.
INFO 2026-06-08 09:38:44 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 2s. Last read position: chr14:54,702,528
INFO 2026-06-08 09:38:44 MarkDuplicates Tracking 620062 as yet unmatched pairs. 29905 records in RAM.
INFO 2026-06-08 09:38:46 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 2s. Last read position: chr14:64,175,032
INFO 2026-06-08 09:38:46 MarkDuplicates Tracking 617603 as yet unmatched pairs. 27442 records in RAM.
INFO 2026-06-08 09:38:48 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr14:69,320,748
INFO 2026-06-08 09:38:48 MarkDuplicates Tracking 614883 as yet unmatched pairs. 24712 records in RAM.
INFO 2026-06-08 09:38:50 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 2s. Last read position: chr14:74,486,342
INFO 2026-06-08 09:38:50 MarkDuplicates Tracking 612876 as yet unmatched pairs. 22705 records in RAM.
INFO 2026-06-08 09:38:52 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr14:75,281,003
INFO 2026-06-08 09:38:52 MarkDuplicates Tracking 610099 as yet unmatched pairs. 19924 records in RAM.
INFO 2026-06-08 09:38:54 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 2s. Last read position: chr14:90,655,028
INFO 2026-06-08 09:38:54 MarkDuplicates Tracking 606547 as yet unmatched pairs. 16366 records in RAM.
INFO 2026-06-08 09:38:56 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 2s. Last read position: chr14:95,433,313
INFO 2026-06-08 09:38:56 MarkDuplicates Tracking 603801 as yet unmatched pairs. 13620 records in RAM.
INFO 2026-06-08 09:38:58 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr14:102,083,084
INFO 2026-06-08 09:38:58 MarkDuplicates Tracking 601467 as yet unmatched pairs. 11265 records in RAM.
INFO 2026-06-08 09:39:00 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 2s. Last read position: chr14:104,939,977
INFO 2026-06-08 09:39:00 MarkDuplicates Tracking 598020 as yet unmatched pairs. 7812 records in RAM.
INFO 2026-06-08 09:39:02 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,174
INFO 2026-06-08 09:39:02 MarkDuplicates Tracking 596225 as yet unmatched pairs. 6016 records in RAM.
INFO 2026-06-08 09:39:04 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,584
INFO 2026-06-08 09:39:04 MarkDuplicates Tracking 602834 as yet unmatched pairs. 12625 records in RAM.
INFO 2026-06-08 09:39:06 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 2s. Last read position: chr14:105,742,815
INFO 2026-06-08 09:39:06 MarkDuplicates Tracking 611189 as yet unmatched pairs. 20980 records in RAM.
INFO 2026-06-08 09:39:08 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 2s. Last read position: chr15:23,645,695
INFO 2026-06-08 09:39:08 MarkDuplicates Tracking 589407 as yet unmatched pairs. 38872 records in RAM.
INFO 2026-06-08 09:39:10 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr15:32,602,537
INFO 2026-06-08 09:39:10 MarkDuplicates Tracking 587676 as yet unmatched pairs. 37139 records in RAM.
INFO 2026-06-08 09:39:12 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr15:39,934,148
INFO 2026-06-08 09:39:12 MarkDuplicates Tracking 584956 as yet unmatched pairs. 34403 records in RAM.
INFO 2026-06-08 09:39:14 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 2s. Last read position: chr15:42,439,449
INFO 2026-06-08 09:39:14 MarkDuplicates Tracking 582470 as yet unmatched pairs. 31903 records in RAM.
INFO 2026-06-08 09:39:16 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 2s. Last read position: chr15:43,792,985
INFO 2026-06-08 09:39:16 MarkDuplicates Tracking 582535 as yet unmatched pairs. 31963 records in RAM.
INFO 2026-06-08 09:39:18 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr15:48,537,797
INFO 2026-06-08 09:39:18 MarkDuplicates Tracking 578146 as yet unmatched pairs. 27574 records in RAM.
INFO 2026-06-08 09:39:21 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 2s. Last read position: chr15:57,192,194
INFO 2026-06-08 09:39:21 MarkDuplicates Tracking 578844 as yet unmatched pairs. 28267 records in RAM.
INFO 2026-06-08 09:39:22 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr15:63,042,818
INFO 2026-06-08 09:39:22 MarkDuplicates Tracking 572685 as yet unmatched pairs. 22107 records in RAM.
INFO 2026-06-08 09:39:25 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 2s. Last read position: chr15:65,204,439
INFO 2026-06-08 09:39:25 MarkDuplicates Tracking 569731 as yet unmatched pairs. 19151 records in RAM.
INFO 2026-06-08 09:39:27 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 2s. Last read position: chr15:71,215,304
INFO 2026-06-08 09:39:27 MarkDuplicates Tracking 566711 as yet unmatched pairs. 16131 records in RAM.
INFO 2026-06-08 09:39:29 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr15:74,035,419
INFO 2026-06-08 09:39:29 MarkDuplicates Tracking 564828 as yet unmatched pairs. 14248 records in RAM.
INFO 2026-06-08 09:39:31 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 2s. Last read position: chr15:77,056,186
INFO 2026-06-08 09:39:31 MarkDuplicates Tracking 560131 as yet unmatched pairs. 9543 records in RAM.
INFO 2026-06-08 09:39:33 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 2s. Last read position: chr15:83,157,542
INFO 2026-06-08 09:39:33 MarkDuplicates Tracking 557769 as yet unmatched pairs. 7179 records in RAM.
INFO 2026-06-08 09:39:34 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr15:88,907,205
INFO 2026-06-08 09:39:34 MarkDuplicates Tracking 556030 as yet unmatched pairs. 5439 records in RAM.
INFO 2026-06-08 09:39:37 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 2s. Last read position: chr15:92,967,399
INFO 2026-06-08 09:39:37 MarkDuplicates Tracking 552809 as yet unmatched pairs. 2216 records in RAM.
INFO 2026-06-08 09:39:39 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 2s. Last read position: chr16:399,689
INFO 2026-06-08 09:39:39 MarkDuplicates Tracking 550777 as yet unmatched pairs. 60989 records in RAM.
INFO 2026-06-08 09:39:41 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 2s. Last read position: chr16:1,765,962
INFO 2026-06-08 09:39:41 MarkDuplicates Tracking 546607 as yet unmatched pairs. 56818 records in RAM.
INFO 2026-06-08 09:39:43 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 2s. Last read position: chr16:2,527,781
INFO 2026-06-08 09:39:43 MarkDuplicates Tracking 543134 as yet unmatched pairs. 53345 records in RAM.
INFO 2026-06-08 09:39:45 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr16:2,766,712
INFO 2026-06-08 09:39:45 MarkDuplicates Tracking 542540 as yet unmatched pairs. 52751 records in RAM.
INFO 2026-06-08 09:39:47 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 2s. Last read position: chr16:3,810,610
INFO 2026-06-08 09:39:47 MarkDuplicates Tracking 538158 as yet unmatched pairs. 48367 records in RAM.
INFO 2026-06-08 09:39:49 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr16:11,781,412
INFO 2026-06-08 09:39:49 MarkDuplicates Tracking 534861 as yet unmatched pairs. 45070 records in RAM.
INFO 2026-06-08 09:39:51 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr16:14,895,025
INFO 2026-06-08 09:39:51 MarkDuplicates Tracking 533144 as yet unmatched pairs. 43350 records in RAM.
INFO 2026-06-08 09:39:53 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr16:15,750,258
INFO 2026-06-08 09:39:53 MarkDuplicates Tracking 531272 as yet unmatched pairs. 41474 records in RAM.
INFO 2026-06-08 09:39:55 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr16:18,318,005
INFO 2026-06-08 09:39:55 MarkDuplicates Tracking 529923 as yet unmatched pairs. 40124 records in RAM.
INFO 2026-06-08 09:39:56 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr16:18,839,743
INFO 2026-06-08 09:39:56 MarkDuplicates Tracking 528866 as yet unmatched pairs. 39066 records in RAM.
INFO 2026-06-08 09:39:58 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr16:21,404,886
INFO 2026-06-08 09:39:58 MarkDuplicates Tracking 528870 as yet unmatched pairs. 39070 records in RAM.
INFO 2026-06-08 09:39:59 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr16:21,835,784
INFO 2026-06-08 09:39:59 MarkDuplicates Tracking 529288 as yet unmatched pairs. 39488 records in RAM.
INFO 2026-06-08 09:40:01 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr16:22,469,141
INFO 2026-06-08 09:40:01 MarkDuplicates Tracking 525337 as yet unmatched pairs. 35537 records in RAM.
INFO 2026-06-08 09:40:03 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,800
INFO 2026-06-08 09:40:03 MarkDuplicates Tracking 525770 as yet unmatched pairs. 35970 records in RAM.
INFO 2026-06-08 09:40:04 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr16:27,506,989
INFO 2026-06-08 09:40:04 MarkDuplicates Tracking 522902 as yet unmatched pairs. 33102 records in RAM.
INFO 2026-06-08 09:40:06 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr16:29,381,708
INFO 2026-06-08 09:40:06 MarkDuplicates Tracking 520761 as yet unmatched pairs. 30961 records in RAM.
INFO 2026-06-08 09:40:08 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr16:29,491,790
INFO 2026-06-08 09:40:08 MarkDuplicates Tracking 521097 as yet unmatched pairs. 31297 records in RAM.
INFO 2026-06-08 09:40:10 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr16:30,223,097
INFO 2026-06-08 09:40:10 MarkDuplicates Tracking 517556 as yet unmatched pairs. 27756 records in RAM.
INFO 2026-06-08 09:40:11 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr16:30,712,683
INFO 2026-06-08 09:40:11 MarkDuplicates Tracking 516397 as yet unmatched pairs. 26595 records in RAM.
INFO 2026-06-08 09:40:13 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr16:31,190,349
INFO 2026-06-08 09:40:13 MarkDuplicates Tracking 514545 as yet unmatched pairs. 24740 records in RAM.
INFO 2026-06-08 09:40:15 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 2s. Last read position: chr16:53,157,224
INFO 2026-06-08 09:40:15 MarkDuplicates Tracking 511437 as yet unmatched pairs. 21630 records in RAM.
INFO 2026-06-08 09:40:17 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 2s. Last read position: chr16:55,505,599
INFO 2026-06-08 09:40:17 MarkDuplicates Tracking 508467 as yet unmatched pairs. 18660 records in RAM.
INFO 2026-06-08 09:40:19 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr16:66,392,358
INFO 2026-06-08 09:40:19 MarkDuplicates Tracking 506114 as yet unmatched pairs. 16306 records in RAM.
INFO 2026-06-08 09:40:21 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 2s. Last read position: chr16:68,191,118
INFO 2026-06-08 09:40:21 MarkDuplicates Tracking 502975 as yet unmatched pairs. 13167 records in RAM.
INFO 2026-06-08 09:40:23 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr16:71,449,575
INFO 2026-06-08 09:40:23 MarkDuplicates Tracking 499861 as yet unmatched pairs. 10046 records in RAM.
INFO 2026-06-08 09:40:25 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 2s. Last read position: chr16:81,044,449
INFO 2026-06-08 09:40:25 MarkDuplicates Tracking 497053 as yet unmatched pairs. 7237 records in RAM.
INFO 2026-06-08 09:40:28 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 2s. Last read position: chr16:88,429,872
INFO 2026-06-08 09:40:28 MarkDuplicates Tracking 494084 as yet unmatched pairs. 4255 records in RAM.
INFO 2026-06-08 09:40:30 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 2s. Last read position: chr16:89,561,614
INFO 2026-06-08 09:40:30 MarkDuplicates Tracking 494383 as yet unmatched pairs. 4552 records in RAM.
INFO 2026-06-08 09:40:35 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 5s. Last read position: chr17:1,483,708
INFO 2026-06-08 09:40:35 MarkDuplicates Tracking 489106 as yet unmatched pairs. 259910 records in RAM.
INFO 2026-06-08 09:40:37 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 2s. Last read position: chr17:2,698,080
INFO 2026-06-08 09:40:37 MarkDuplicates Tracking 485249 as yet unmatched pairs. 256053 records in RAM.
INFO 2026-06-08 09:40:40 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 2s. Last read position: chr17:5,023,884
INFO 2026-06-08 09:40:40 MarkDuplicates Tracking 482440 as yet unmatched pairs. 253244 records in RAM.
INFO 2026-06-08 09:40:42 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 2s. Last read position: chr17:7,417,002
INFO 2026-06-08 09:40:42 MarkDuplicates Tracking 479808 as yet unmatched pairs. 250610 records in RAM.
INFO 2026-06-08 09:40:44 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr17:7,676,077
INFO 2026-06-08 09:40:44 MarkDuplicates Tracking 476885 as yet unmatched pairs. 247687 records in RAM.
INFO 2026-06-08 09:40:46 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 2s. Last read position: chr17:8,379,804
INFO 2026-06-08 09:40:46 MarkDuplicates Tracking 474788 as yet unmatched pairs. 245590 records in RAM.
INFO 2026-06-08 09:40:48 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 2s. Last read position: chr17:16,417,682
INFO 2026-06-08 09:40:48 MarkDuplicates Tracking 471187 as yet unmatched pairs. 241987 records in RAM.
INFO 2026-06-08 09:40:50 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr17:18,839,958
INFO 2026-06-08 09:40:50 MarkDuplicates Tracking 468518 as yet unmatched pairs. 239318 records in RAM.
INFO 2026-06-08 09:40:53 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 2s. Last read position: chr17:28,700,428
INFO 2026-06-08 09:40:53 MarkDuplicates Tracking 466122 as yet unmatched pairs. 236921 records in RAM.
INFO 2026-06-08 09:40:55 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr17:31,360,594
INFO 2026-06-08 09:40:55 MarkDuplicates Tracking 463389 as yet unmatched pairs. 234187 records in RAM.
INFO 2026-06-08 09:40:57 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 2s. Last read position: chr17:35,984,441
INFO 2026-06-08 09:40:57 MarkDuplicates Tracking 461538 as yet unmatched pairs. 232336 records in RAM.
INFO 2026-06-08 09:40:59 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr17:38,799,311
INFO 2026-06-08 09:40:59 MarkDuplicates Tracking 458308 as yet unmatched pairs. 229106 records in RAM.
INFO 2026-06-08 09:41:01 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 2s. Last read position: chr17:39,717,332
INFO 2026-06-08 09:41:01 MarkDuplicates Tracking 456354 as yet unmatched pairs. 227151 records in RAM.
INFO 2026-06-08 09:41:03 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 2s. Last read position: chr17:41,689,043
INFO 2026-06-08 09:41:03 MarkDuplicates Tracking 453369 as yet unmatched pairs. 224166 records in RAM.
INFO 2026-06-08 09:41:05 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr17:42,668,197
INFO 2026-06-08 09:41:05 MarkDuplicates Tracking 449631 as yet unmatched pairs. 220428 records in RAM.
INFO 2026-06-08 09:41:07 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 2s. Last read position: chr17:44,350,688
INFO 2026-06-08 09:41:07 MarkDuplicates Tracking 447061 as yet unmatched pairs. 217858 records in RAM.
INFO 2026-06-08 09:41:09 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr17:46,513,936
INFO 2026-06-08 09:41:09 MarkDuplicates Tracking 444247 as yet unmatched pairs. 215044 records in RAM.
INFO 2026-06-08 09:41:11 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 2s. Last read position: chr17:49,706,219
INFO 2026-06-08 09:41:11 MarkDuplicates Tracking 441775 as yet unmatched pairs. 212569 records in RAM.
INFO 2026-06-08 09:41:13 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 2s. Last read position: chr17:50,185,495
INFO 2026-06-08 09:41:13 MarkDuplicates Tracking 489654 as yet unmatched pairs. 260448 records in RAM.
INFO 2026-06-08 09:41:15 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 2s. Last read position: chr17:50,185,591
INFO 2026-06-08 09:41:15 MarkDuplicates Tracking 477661 as yet unmatched pairs. 248455 records in RAM.
INFO 2026-06-08 09:41:18 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 2s. Last read position: chr17:50,185,877
INFO 2026-06-08 09:41:18 MarkDuplicates Tracking 449589 as yet unmatched pairs. 220383 records in RAM.
INFO 2026-06-08 09:41:19 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,994
INFO 2026-06-08 09:41:19 MarkDuplicates Tracking 470854 as yet unmatched pairs. 241648 records in RAM.
INFO 2026-06-08 09:41:22 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 2s. Last read position: chr17:50,186,479
INFO 2026-06-08 09:41:22 MarkDuplicates Tracking 440818 as yet unmatched pairs. 211612 records in RAM.
INFO 2026-06-08 09:41:24 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 2s. Last read position: chr17:50,186,717
INFO 2026-06-08 09:41:24 MarkDuplicates Tracking 474405 as yet unmatched pairs. 245199 records in RAM.
INFO 2026-06-08 09:41:26 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,851
INFO 2026-06-08 09:41:26 MarkDuplicates Tracking 482364 as yet unmatched pairs. 253158 records in RAM.
INFO 2026-06-08 09:41:29 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,014
INFO 2026-06-08 09:41:29 MarkDuplicates Tracking 551028 as yet unmatched pairs. 321822 records in RAM.
INFO 2026-06-08 09:41:31 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,067
INFO 2026-06-08 09:41:31 MarkDuplicates Tracking 540781 as yet unmatched pairs. 311575 records in RAM.
INFO 2026-06-08 09:41:33 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,485
INFO 2026-06-08 09:41:33 MarkDuplicates Tracking 539282 as yet unmatched pairs. 310076 records in RAM.
INFO 2026-06-08 09:41:36 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,895
INFO 2026-06-08 09:41:36 MarkDuplicates Tracking 509842 as yet unmatched pairs. 280635 records in RAM.