Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-070e1d-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-070e1d-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-070e1d-R1_B23WHYVLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:27:05.700 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:27:05 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-070e1d-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-070e1d-R1_B23WHYVLT4_1.md.bam --METRICS_FILE aih-tih-sc-070e1d-R1_B23WHYVLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:27:05 GMT 2026] Executing as ?@nf-e90a480b68974d6270a7bd11f47d6bc4-999bf-xb5gd on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:27:05 MarkDuplicates Start of doWork freeMemory: 105828160; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:27:05 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:27:05 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:27:10 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,294,526
INFO 2026-06-08 08:27:10 MarkDuplicates Tracking 3113 as yet unmatched pairs. 113 records in RAM.
INFO 2026-06-08 08:27:11 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 1s. Last read position: chr1:1,754,346
INFO 2026-06-08 08:27:11 MarkDuplicates Tracking 6450 as yet unmatched pairs. 271 records in RAM.
INFO 2026-06-08 08:27:13 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:6,644,576
INFO 2026-06-08 08:27:13 MarkDuplicates Tracking 9304 as yet unmatched pairs. 55 records in RAM.
INFO 2026-06-08 08:27:15 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:10,179,470
INFO 2026-06-08 08:27:15 MarkDuplicates Tracking 12129 as yet unmatched pairs. 61 records in RAM.
INFO 2026-06-08 08:27:17 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:12,308,605
INFO 2026-06-08 08:27:17 MarkDuplicates Tracking 14952 as yet unmatched pairs. 93 records in RAM.
INFO 2026-06-08 08:27:19 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:16,569,110
INFO 2026-06-08 08:27:19 MarkDuplicates Tracking 17469 as yet unmatched pairs. 47 records in RAM.
INFO 2026-06-08 08:27:21 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:19,223,548
INFO 2026-06-08 08:27:21 MarkDuplicates Tracking 20291 as yet unmatched pairs. 221 records in RAM.
INFO 2026-06-08 08:27:23 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:21,824,360
INFO 2026-06-08 08:27:23 MarkDuplicates Tracking 23211 as yet unmatched pairs. 443 records in RAM.
INFO 2026-06-08 08:27:24 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:22,644,131
INFO 2026-06-08 08:27:24 MarkDuplicates Tracking 26853 as yet unmatched pairs. 941 records in RAM.
INFO 2026-06-08 08:27:26 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:23,793,891
INFO 2026-06-08 08:27:26 MarkDuplicates Tracking 29019 as yet unmatched pairs. 401 records in RAM.
INFO 2026-06-08 08:27:29 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:26,282,764
INFO 2026-06-08 08:27:29 MarkDuplicates Tracking 31484 as yet unmatched pairs. 178 records in RAM.
INFO 2026-06-08 08:27:30 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:27,349,713
INFO 2026-06-08 08:27:30 MarkDuplicates Tracking 34245 as yet unmatched pairs. 47 records in RAM.
INFO 2026-06-08 08:27:33 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:30,735,187
INFO 2026-06-08 08:27:33 MarkDuplicates Tracking 37450 as yet unmatched pairs. 570 records in RAM.
INFO 2026-06-08 08:27:34 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:32,224,410
INFO 2026-06-08 08:27:34 MarkDuplicates Tracking 40480 as yet unmatched pairs. 689 records in RAM.
INFO 2026-06-08 08:27:36 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:32,780,122
INFO 2026-06-08 08:27:36 MarkDuplicates Tracking 42782 as yet unmatched pairs. 154 records in RAM.
INFO 2026-06-08 08:27:38 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 2s. Last read position: chr1:36,137,932
INFO 2026-06-08 08:27:38 MarkDuplicates Tracking 45714 as yet unmatched pairs. 403 records in RAM.
INFO 2026-06-08 08:27:40 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:39,461,975
INFO 2026-06-08 08:27:40 MarkDuplicates Tracking 47957 as yet unmatched pairs. 45 records in RAM.
INFO 2026-06-08 08:27:41 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:42,831,024
INFO 2026-06-08 08:27:41 MarkDuplicates Tracking 50763 as yet unmatched pairs. 78 records in RAM.
INFO 2026-06-08 08:27:43 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:43,981,368
INFO 2026-06-08 08:27:43 MarkDuplicates Tracking 53596 as yet unmatched pairs. 77 records in RAM.
INFO 2026-06-08 08:27:45 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:46,146,687
INFO 2026-06-08 08:27:45 MarkDuplicates Tracking 56088 as yet unmatched pairs. 17 records in RAM.
INFO 2026-06-08 08:27:47 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:52,431,087
INFO 2026-06-08 08:27:47 MarkDuplicates Tracking 58799 as yet unmatched pairs. 86 records in RAM.
INFO 2026-06-08 08:27:49 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:61,884,380
INFO 2026-06-08 08:27:49 MarkDuplicates Tracking 61617 as yet unmatched pairs. 75 records in RAM.
INFO 2026-06-08 08:27:51 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:77,578,798
INFO 2026-06-08 08:27:51 MarkDuplicates Tracking 64017 as yet unmatched pairs. 126 records in RAM.
INFO 2026-06-08 08:27:53 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:89,127,033
INFO 2026-06-08 08:27:53 MarkDuplicates Tracking 66211 as yet unmatched pairs. 16 records in RAM.
INFO 2026-06-08 08:27:54 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:96,679,361
INFO 2026-06-08 08:27:54 MarkDuplicates Tracking 68686 as yet unmatched pairs. 109 records in RAM.
INFO 2026-06-08 08:27:56 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:109,490,116
INFO 2026-06-08 08:27:56 MarkDuplicates Tracking 70947 as yet unmatched pairs. 47 records in RAM.
INFO 2026-06-08 08:27:57 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:113,681,268
INFO 2026-06-08 08:27:57 MarkDuplicates Tracking 73582 as yet unmatched pairs. 164 records in RAM.
INFO 2026-06-08 08:27:59 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:117,120,900
INFO 2026-06-08 08:27:59 MarkDuplicates Tracking 76107 as yet unmatched pairs. 78 records in RAM.
INFO 2026-06-08 08:28:01 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:120,005,515
INFO 2026-06-08 08:28:01 MarkDuplicates Tracking 78822 as yet unmatched pairs. 258 records in RAM.
INFO 2026-06-08 08:28:02 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:146,109,750
INFO 2026-06-08 08:28:02 MarkDuplicates Tracking 80132 as yet unmatched pairs. 46 records in RAM.
INFO 2026-06-08 08:28:03 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:148,748,967
INFO 2026-06-08 08:28:03 MarkDuplicates Tracking 81422 as yet unmatched pairs. 65 records in RAM.
INFO 2026-06-08 08:28:05 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:149,842,327
INFO 2026-06-08 08:28:05 MarkDuplicates Tracking 84878 as yet unmatched pairs. 1441 records in RAM.
INFO 2026-06-08 08:28:06 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:150,077,664
INFO 2026-06-08 08:28:06 MarkDuplicates Tracking 84869 as yet unmatched pairs. 85 records in RAM.
INFO 2026-06-08 08:28:07 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:150,968,488
INFO 2026-06-08 08:28:07 MarkDuplicates Tracking 87824 as yet unmatched pairs. 451 records in RAM.
INFO 2026-06-08 08:28:09 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:152,910,694
INFO 2026-06-08 08:28:09 MarkDuplicates Tracking 90095 as yet unmatched pairs. 69 records in RAM.
INFO 2026-06-08 08:28:10 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:154,157,636
INFO 2026-06-08 08:28:10 MarkDuplicates Tracking 96916 as yet unmatched pairs. 4314 records in RAM.
INFO 2026-06-08 08:28:12 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:154,679,055
INFO 2026-06-08 08:28:12 MarkDuplicates Tracking 95094 as yet unmatched pairs. 53 records in RAM.
INFO 2026-06-08 08:28:14 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 2s. Last read position: chr1:155,357,718
INFO 2026-06-08 08:28:14 MarkDuplicates Tracking 97921 as yet unmatched pairs. 126 records in RAM.
INFO 2026-06-08 08:28:18 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 3s. Last read position: chr1:156,134,857
INFO 2026-06-08 08:28:18 MarkDuplicates Tracking 101311 as yet unmatched pairs. 662 records in RAM.
INFO 2026-06-08 08:28:20 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 2s. Last read position: chr1:156,592,105
INFO 2026-06-08 08:28:20 MarkDuplicates Tracking 103899 as yet unmatched pairs. 128 records in RAM.
INFO 2026-06-08 08:28:22 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:160,294,583
INFO 2026-06-08 08:28:22 MarkDuplicates Tracking 106520 as yet unmatched pairs. 192 records in RAM.
INFO 2026-06-08 08:28:24 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:161,542,536
INFO 2026-06-08 08:28:24 MarkDuplicates Tracking 109634 as yet unmatched pairs. 873 records in RAM.
INFO 2026-06-08 08:28:25 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:169,590,176
INFO 2026-06-08 08:28:25 MarkDuplicates Tracking 111131 as yet unmatched pairs. 18 records in RAM.
INFO 2026-06-08 08:28:27 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:178,094,570
INFO 2026-06-08 08:28:27 MarkDuplicates Tracking 113773 as yet unmatched pairs. 187 records in RAM.
INFO 2026-06-08 08:28:29 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:183,115,530
INFO 2026-06-08 08:28:29 MarkDuplicates Tracking 116361 as yet unmatched pairs. 103 records in RAM.
INFO 2026-06-08 08:28:30 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:186,360,289
INFO 2026-06-08 08:28:30 MarkDuplicates Tracking 118725 as yet unmatched pairs. 328 records in RAM.
INFO 2026-06-08 08:28:32 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:201,389,273
INFO 2026-06-08 08:28:32 MarkDuplicates Tracking 121191 as yet unmatched pairs. 205 records in RAM.
INFO 2026-06-08 08:28:33 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:203,774,635
INFO 2026-06-08 08:28:33 MarkDuplicates Tracking 123771 as yet unmatched pairs. 72 records in RAM.
INFO 2026-06-08 08:28:35 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:206,206,026
INFO 2026-06-08 08:28:35 MarkDuplicates Tracking 126093 as yet unmatched pairs. 36 records in RAM.
INFO 2026-06-08 08:28:36 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:211,575,437
INFO 2026-06-08 08:28:36 MarkDuplicates Tracking 128794 as yet unmatched pairs. 121 records in RAM.
INFO 2026-06-08 08:28:38 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:223,821,228
INFO 2026-06-08 08:28:38 MarkDuplicates Tracking 131100 as yet unmatched pairs. 44 records in RAM.
INFO 2026-06-08 08:28:39 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:228,097,126
INFO 2026-06-08 08:28:39 MarkDuplicates Tracking 134215 as yet unmatched pairs. 664 records in RAM.
INFO 2026-06-08 08:28:41 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:234,607,150
INFO 2026-06-08 08:28:41 MarkDuplicates Tracking 137342 as yet unmatched pairs. 721 records in RAM.
INFO 2026-06-08 08:28:43 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:244,858,168
INFO 2026-06-08 08:28:43 MarkDuplicates Tracking 140119 as yet unmatched pairs. 806 records in RAM.
INFO 2026-06-08 08:28:45 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 2s. Last read position: chr2:3,545,783
INFO 2026-06-08 08:28:45 MarkDuplicates Tracking 142282 as yet unmatched pairs. 142073 records in RAM.
INFO 2026-06-08 08:28:47 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr2:15,604,436
INFO 2026-06-08 08:28:47 MarkDuplicates Tracking 145048 as yet unmatched pairs. 144834 records in RAM.
INFO 2026-06-08 08:28:49 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr2:20,204,272
INFO 2026-06-08 08:28:49 MarkDuplicates Tracking 150756 as yet unmatched pairs. 150541 records in RAM.
INFO 2026-06-08 08:28:50 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr2:26,134,973
INFO 2026-06-08 08:28:50 MarkDuplicates Tracking 150747 as yet unmatched pairs. 150504 records in RAM.
INFO 2026-06-08 08:28:52 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr2:27,386,230
INFO 2026-06-08 08:28:52 MarkDuplicates Tracking 153534 as yet unmatched pairs. 153288 records in RAM.
INFO 2026-06-08 08:28:54 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr2:29,920,047
INFO 2026-06-08 08:28:54 MarkDuplicates Tracking 156617 as yet unmatched pairs. 156370 records in RAM.
INFO 2026-06-08 08:28:56 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,256
INFO 2026-06-08 08:28:56 MarkDuplicates Tracking 228986 as yet unmatched pairs. 153623 records in RAM.
INFO 2026-06-08 08:28:58 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:28:58 MarkDuplicates Tracking 508102 as yet unmatched pairs. 137269 records in RAM.
INFO 2026-06-08 08:29:00 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:29:00 MarkDuplicates Tracking 1145923 as yet unmatched pairs. 99904 records in RAM.
INFO 2026-06-08 08:29:02 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:29:02 MarkDuplicates Tracking 1331532 as yet unmatched pairs. 89258 records in RAM.
INFO 2026-06-08 08:29:04 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:29:04 MarkDuplicates Tracking 1335215 as yet unmatched pairs. 89076 records in RAM.
INFO 2026-06-08 08:29:05 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:37,269,617
INFO 2026-06-08 08:29:05 MarkDuplicates Tracking 1423644 as yet unmatched pairs. 83245 records in RAM.
INFO 2026-06-08 08:29:07 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:43,549,356
INFO 2026-06-08 08:29:07 MarkDuplicates Tracking 1422229 as yet unmatched pairs. 81822 records in RAM.
INFO 2026-06-08 08:29:09 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 2s. Last read position: chr2:47,834,829
INFO 2026-06-08 08:29:09 MarkDuplicates Tracking 1418563 as yet unmatched pairs. 78154 records in RAM.
INFO 2026-06-08 08:29:11 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 2s. Last read position: chr2:55,349,565
INFO 2026-06-08 08:29:11 MarkDuplicates Tracking 1415918 as yet unmatched pairs. 75507 records in RAM.
INFO 2026-06-08 08:29:13 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:64,458,329
INFO 2026-06-08 08:29:13 MarkDuplicates Tracking 1413347 as yet unmatched pairs. 72932 records in RAM.
INFO 2026-06-08 08:29:15 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 2s. Last read position: chr2:71,076,638
INFO 2026-06-08 08:29:15 MarkDuplicates Tracking 1411387 as yet unmatched pairs. 70968 records in RAM.
INFO 2026-06-08 08:29:17 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:74,369,477
INFO 2026-06-08 08:29:17 MarkDuplicates Tracking 1408397 as yet unmatched pairs. 67975 records in RAM.
INFO 2026-06-08 08:29:19 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:85,401,875
INFO 2026-06-08 08:29:19 MarkDuplicates Tracking 1405520 as yet unmatched pairs. 65094 records in RAM.
INFO 2026-06-08 08:29:20 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:88,857,347
INFO 2026-06-08 08:29:20 MarkDuplicates Tracking 1405932 as yet unmatched pairs. 65504 records in RAM.
INFO 2026-06-08 08:29:22 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:96,551,953
INFO 2026-06-08 08:29:22 MarkDuplicates Tracking 1400643 as yet unmatched pairs. 60214 records in RAM.
INFO 2026-06-08 08:29:24 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:101,253,312
INFO 2026-06-08 08:29:24 MarkDuplicates Tracking 1398124 as yet unmatched pairs. 57686 records in RAM.
INFO 2026-06-08 08:29:25 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:108,766,883
INFO 2026-06-08 08:29:25 MarkDuplicates Tracking 1396156 as yet unmatched pairs. 55717 records in RAM.
INFO 2026-06-08 08:29:27 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:112,388,543
INFO 2026-06-08 08:29:27 MarkDuplicates Tracking 1394358 as yet unmatched pairs. 53917 records in RAM.
INFO 2026-06-08 08:29:28 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:127,307,521
INFO 2026-06-08 08:29:28 MarkDuplicates Tracking 1392535 as yet unmatched pairs. 52076 records in RAM.
INFO 2026-06-08 08:29:30 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:134,954,485
INFO 2026-06-08 08:29:30 MarkDuplicates Tracking 1389815 as yet unmatched pairs. 49351 records in RAM.
INFO 2026-06-08 08:29:32 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:156,496,172
INFO 2026-06-08 08:29:32 MarkDuplicates Tracking 1387681 as yet unmatched pairs. 47215 records in RAM.
INFO 2026-06-08 08:29:33 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:169,906,153
INFO 2026-06-08 08:29:33 MarkDuplicates Tracking 1385147 as yet unmatched pairs. 44680 records in RAM.
INFO 2026-06-08 08:29:35 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:177,215,765
INFO 2026-06-08 08:29:35 MarkDuplicates Tracking 1383328 as yet unmatched pairs. 42857 records in RAM.
INFO 2026-06-08 08:29:36 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:188,984,747
INFO 2026-06-08 08:29:36 MarkDuplicates Tracking 1381158 as yet unmatched pairs. 40687 records in RAM.
INFO 2026-06-08 08:29:38 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:188,999,494
INFO 2026-06-08 08:29:38 MarkDuplicates Tracking 1378977 as yet unmatched pairs. 38506 records in RAM.
INFO 2026-06-08 08:29:40 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:189,058,464
INFO 2026-06-08 08:29:40 MarkDuplicates Tracking 1374501 as yet unmatched pairs. 34029 records in RAM.
INFO 2026-06-08 08:29:41 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:197,409,948
INFO 2026-06-08 08:29:41 MarkDuplicates Tracking 1371585 as yet unmatched pairs. 31108 records in RAM.
INFO 2026-06-08 08:29:43 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:202,894,589
INFO 2026-06-08 08:29:43 MarkDuplicates Tracking 1369010 as yet unmatched pairs. 28523 records in RAM.
INFO 2026-06-08 08:29:46 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 2s. Last read position: chr2:215,361,312
INFO 2026-06-08 08:29:46 MarkDuplicates Tracking 1366684 as yet unmatched pairs. 26195 records in RAM.
INFO 2026-06-08 08:29:47 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:215,378,247
INFO 2026-06-08 08:29:47 MarkDuplicates Tracking 1365745 as yet unmatched pairs. 25254 records in RAM.
INFO 2026-06-08 08:29:49 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:215,404,557
INFO 2026-06-08 08:29:49 MarkDuplicates Tracking 1362860 as yet unmatched pairs. 22369 records in RAM.
INFO 2026-06-08 08:29:51 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:215,428,311
INFO 2026-06-08 08:29:51 MarkDuplicates Tracking 1361524 as yet unmatched pairs. 21032 records in RAM.
INFO 2026-06-08 08:29:52 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:218,245,472
INFO 2026-06-08 08:29:52 MarkDuplicates Tracking 1356438 as yet unmatched pairs. 15946 records in RAM.
INFO 2026-06-08 08:29:54 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 2s. Last read position: chr2:219,541,652
INFO 2026-06-08 08:29:54 MarkDuplicates Tracking 1353253 as yet unmatched pairs. 12747 records in RAM.
INFO 2026-06-08 08:29:57 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 2s. Last read position: chr2:230,878,265
INFO 2026-06-08 08:29:57 MarkDuplicates Tracking 1351094 as yet unmatched pairs. 10526 records in RAM.
INFO 2026-06-08 08:29:58 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:233,485,790
INFO 2026-06-08 08:29:58 MarkDuplicates Tracking 1348120 as yet unmatched pairs. 7548 records in RAM.
INFO 2026-06-08 08:30:00 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:237,374,499
INFO 2026-06-08 08:30:00 MarkDuplicates Tracking 1345458 as yet unmatched pairs. 4884 records in RAM.
INFO 2026-06-08 08:30:02 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:241,235,165
INFO 2026-06-08 08:30:02 MarkDuplicates Tracking 1342519 as yet unmatched pairs. 1930 records in RAM.
INFO 2026-06-08 08:30:04 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 2s. Last read position: chr3:9,434,335
INFO 2026-06-08 08:30:04 MarkDuplicates Tracking 1339678 as yet unmatched pairs. 82544 records in RAM.
INFO 2026-06-08 08:30:06 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr3:12,416,812
INFO 2026-06-08 08:30:06 MarkDuplicates Tracking 1337155 as yet unmatched pairs. 80019 records in RAM.
INFO 2026-06-08 08:30:07 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr3:15,232,530
INFO 2026-06-08 08:30:07 MarkDuplicates Tracking 1334530 as yet unmatched pairs. 77394 records in RAM.
INFO 2026-06-08 08:30:09 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr3:25,642,350
INFO 2026-06-08 08:30:09 MarkDuplicates Tracking 1332514 as yet unmatched pairs. 75375 records in RAM.
INFO 2026-06-08 08:30:11 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr3:37,323,730
INFO 2026-06-08 08:30:11 MarkDuplicates Tracking 1329924 as yet unmatched pairs. 72782 records in RAM.
INFO 2026-06-08 08:30:12 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr3:39,411,963
INFO 2026-06-08 08:30:12 MarkDuplicates Tracking 1336503 as yet unmatched pairs. 79360 records in RAM.
INFO 2026-06-08 08:30:14 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr3:42,219,279
INFO 2026-06-08 08:30:14 MarkDuplicates Tracking 1324762 as yet unmatched pairs. 67618 records in RAM.
INFO 2026-06-08 08:30:16 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr3:46,994,009
INFO 2026-06-08 08:30:16 MarkDuplicates Tracking 1321899 as yet unmatched pairs. 64755 records in RAM.
INFO 2026-06-08 08:30:18 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr3:47,846,451
INFO 2026-06-08 08:30:18 MarkDuplicates Tracking 1319107 as yet unmatched pairs. 61962 records in RAM.
INFO 2026-06-08 08:30:20 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 2s. Last read position: chr3:48,567,838
INFO 2026-06-08 08:30:20 MarkDuplicates Tracking 1316628 as yet unmatched pairs. 59483 records in RAM.
INFO 2026-06-08 08:30:22 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 2s. Last read position: chr3:49,012,180
INFO 2026-06-08 08:30:22 MarkDuplicates Tracking 1313711 as yet unmatched pairs. 56565 records in RAM.
INFO 2026-06-08 08:30:24 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:49,358,108
INFO 2026-06-08 08:30:24 MarkDuplicates Tracking 1310374 as yet unmatched pairs. 53228 records in RAM.
INFO 2026-06-08 08:30:26 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr3:50,188,033
INFO 2026-06-08 08:30:26 MarkDuplicates Tracking 1307681 as yet unmatched pairs. 50534 records in RAM.
INFO 2026-06-08 08:30:27 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:51,993,788
INFO 2026-06-08 08:30:27 MarkDuplicates Tracking 1306700 as yet unmatched pairs. 49551 records in RAM.
INFO 2026-06-08 08:30:29 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr3:52,527,619
INFO 2026-06-08 08:30:29 MarkDuplicates Tracking 1302158 as yet unmatched pairs. 45003 records in RAM.
INFO 2026-06-08 08:30:31 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:55,469,343
INFO 2026-06-08 08:30:31 MarkDuplicates Tracking 1299245 as yet unmatched pairs. 42090 records in RAM.
INFO 2026-06-08 08:30:32 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr3:58,105,090
INFO 2026-06-08 08:30:32 MarkDuplicates Tracking 1296209 as yet unmatched pairs. 39037 records in RAM.
INFO 2026-06-08 08:30:34 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:72,378,408
INFO 2026-06-08 08:30:34 MarkDuplicates Tracking 1293507 as yet unmatched pairs. 36332 records in RAM.
INFO 2026-06-08 08:30:37 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 2s. Last read position: chr3:100,713,669
INFO 2026-06-08 08:30:37 MarkDuplicates Tracking 1291480 as yet unmatched pairs. 34300 records in RAM.
INFO 2026-06-08 08:30:39 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:113,446,588
INFO 2026-06-08 08:30:39 MarkDuplicates Tracking 1288792 as yet unmatched pairs. 31600 records in RAM.
INFO 2026-06-08 08:30:40 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr3:121,722,284
INFO 2026-06-08 08:30:40 MarkDuplicates Tracking 1286363 as yet unmatched pairs. 29145 records in RAM.
INFO 2026-06-08 08:30:42 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:127,005,113
INFO 2026-06-08 08:30:42 MarkDuplicates Tracking 1283839 as yet unmatched pairs. 26610 records in RAM.
INFO 2026-06-08 08:30:44 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:129,171,674
INFO 2026-06-08 08:30:44 MarkDuplicates Tracking 1282435 as yet unmatched pairs. 25203 records in RAM.
INFO 2026-06-08 08:30:45 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:133,628,556
INFO 2026-06-08 08:30:45 MarkDuplicates Tracking 1278406 as yet unmatched pairs. 21174 records in RAM.
INFO 2026-06-08 08:30:47 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:143,023,028
INFO 2026-06-08 08:30:47 MarkDuplicates Tracking 1276105 as yet unmatched pairs. 18870 records in RAM.
INFO 2026-06-08 08:30:49 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:156,674,740
INFO 2026-06-08 08:30:49 MarkDuplicates Tracking 1273375 as yet unmatched pairs. 16131 records in RAM.
INFO 2026-06-08 08:30:50 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:171,709,578
INFO 2026-06-08 08:30:50 MarkDuplicates Tracking 1270993 as yet unmatched pairs. 13748 records in RAM.
INFO 2026-06-08 08:30:52 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 2s. Last read position: chr3:183,866,708
INFO 2026-06-08 08:30:52 MarkDuplicates Tracking 1268694 as yet unmatched pairs. 11447 records in RAM.
INFO 2026-06-08 08:30:54 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:184,323,201
INFO 2026-06-08 08:30:54 MarkDuplicates Tracking 1265744 as yet unmatched pairs. 8497 records in RAM.
INFO 2026-06-08 08:30:56 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 2s. Last read position: chr3:188,609,385
INFO 2026-06-08 08:30:56 MarkDuplicates Tracking 1263558 as yet unmatched pairs. 6306 records in RAM.
INFO 2026-06-08 08:30:58 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:195,786,352
INFO 2026-06-08 08:30:58 MarkDuplicates Tracking 1261267 as yet unmatched pairs. 4009 records in RAM.
INFO 2026-06-08 08:31:00 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:197,065,279
INFO 2026-06-08 08:31:00 MarkDuplicates Tracking 1258437 as yet unmatched pairs. 1179 records in RAM.
INFO 2026-06-08 08:31:02 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr4:1,225,436
INFO 2026-06-08 08:31:02 MarkDuplicates Tracking 1255504 as yet unmatched pairs. 45262 records in RAM.
INFO 2026-06-08 08:31:04 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr4:1,801,618
INFO 2026-06-08 08:31:04 MarkDuplicates Tracking 1252960 as yet unmatched pairs. 42718 records in RAM.
INFO 2026-06-08 08:31:05 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr4:1,930,762
INFO 2026-06-08 08:31:05 MarkDuplicates Tracking 1249287 as yet unmatched pairs. 39044 records in RAM.
INFO 2026-06-08 08:31:07 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr4:4,457,229
INFO 2026-06-08 08:31:07 MarkDuplicates Tracking 1246386 as yet unmatched pairs. 36137 records in RAM.
INFO 2026-06-08 08:31:09 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr4:9,941,935
INFO 2026-06-08 08:31:09 MarkDuplicates Tracking 1243502 as yet unmatched pairs. 33249 records in RAM.
INFO 2026-06-08 08:31:10 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr4:25,406,828
INFO 2026-06-08 08:31:10 MarkDuplicates Tracking 1241056 as yet unmatched pairs. 30802 records in RAM.
INFO 2026-06-08 08:31:12 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 2s. Last read position: chr4:39,737,421
INFO 2026-06-08 08:31:12 MarkDuplicates Tracking 1238587 as yet unmatched pairs. 28304 records in RAM.
INFO 2026-06-08 08:31:14 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr4:54,267,346
INFO 2026-06-08 08:31:14 MarkDuplicates Tracking 1236299 as yet unmatched pairs. 26010 records in RAM.
INFO 2026-06-08 08:31:16 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr4:67,641,196
INFO 2026-06-08 08:31:16 MarkDuplicates Tracking 1233486 as yet unmatched pairs. 23193 records in RAM.
INFO 2026-06-08 08:31:17 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr4:76,115,296
INFO 2026-06-08 08:31:17 MarkDuplicates Tracking 1230910 as yet unmatched pairs. 20617 records in RAM.
INFO 2026-06-08 08:31:19 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr4:82,867,261
INFO 2026-06-08 08:31:19 MarkDuplicates Tracking 1228515 as yet unmatched pairs. 18220 records in RAM.
INFO 2026-06-08 08:31:21 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr4:90,309,215
INFO 2026-06-08 08:31:21 MarkDuplicates Tracking 1225984 as yet unmatched pairs. 15683 records in RAM.
INFO 2026-06-08 08:31:22 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr4:105,235,241
INFO 2026-06-08 08:31:22 MarkDuplicates Tracking 1223432 as yet unmatched pairs. 13124 records in RAM.
INFO 2026-06-08 08:31:24 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr4:120,062,028
INFO 2026-06-08 08:31:24 MarkDuplicates Tracking 1221278 as yet unmatched pairs. 10968 records in RAM.
INFO 2026-06-08 08:31:25 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr4:139,697,928
INFO 2026-06-08 08:31:25 MarkDuplicates Tracking 1219237 as yet unmatched pairs. 8914 records in RAM.
INFO 2026-06-08 08:31:27 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr4:148,023,335
INFO 2026-06-08 08:31:27 MarkDuplicates Tracking 1216244 as yet unmatched pairs. 5918 records in RAM.
INFO 2026-06-08 08:31:29 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 2s. Last read position: chr4:153,785,908
INFO 2026-06-08 08:31:29 MarkDuplicates Tracking 1213994 as yet unmatched pairs. 3664 records in RAM.
INFO 2026-06-08 08:31:31 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr4:184,398,932
INFO 2026-06-08 08:31:31 MarkDuplicates Tracking 1211700 as yet unmatched pairs. 1369 records in RAM.
INFO 2026-06-08 08:31:34 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 2s. Last read position: chr5:1,576,579
INFO 2026-06-08 08:31:34 MarkDuplicates Tracking 1208955 as yet unmatched pairs. 56783 records in RAM.
INFO 2026-06-08 08:31:35 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr5:14,473,995
INFO 2026-06-08 08:31:35 MarkDuplicates Tracking 1206962 as yet unmatched pairs. 54785 records in RAM.
INFO 2026-06-08 08:31:37 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr5:37,022,285
INFO 2026-06-08 08:31:37 MarkDuplicates Tracking 1204297 as yet unmatched pairs. 52105 records in RAM.
INFO 2026-06-08 08:31:39 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr5:56,504,771
INFO 2026-06-08 08:31:39 MarkDuplicates Tracking 1201740 as yet unmatched pairs. 49546 records in RAM.
INFO 2026-06-08 08:31:40 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr5:69,618,376
INFO 2026-06-08 08:31:40 MarkDuplicates Tracking 1199335 as yet unmatched pairs. 47137 records in RAM.
INFO 2026-06-08 08:31:42 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr5:75,351,232
INFO 2026-06-08 08:31:42 MarkDuplicates Tracking 1197465 as yet unmatched pairs. 45266 records in RAM.
INFO 2026-06-08 08:31:44 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr5:83,540,217
INFO 2026-06-08 08:31:44 MarkDuplicates Tracking 1195457 as yet unmatched pairs. 43253 records in RAM.
INFO 2026-06-08 08:31:45 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr5:108,897,659
INFO 2026-06-08 08:31:45 MarkDuplicates Tracking 1192817 as yet unmatched pairs. 40610 records in RAM.
INFO 2026-06-08 08:31:47 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr5:128,369,203
INFO 2026-06-08 08:31:47 MarkDuplicates Tracking 1190307 as yet unmatched pairs. 38096 records in RAM.
INFO 2026-06-08 08:31:49 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr5:135,334,995
INFO 2026-06-08 08:31:49 MarkDuplicates Tracking 1187793 as yet unmatched pairs. 35581 records in RAM.
INFO 2026-06-08 08:31:50 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr5:139,321,933
INFO 2026-06-08 08:31:50 MarkDuplicates Tracking 1185216 as yet unmatched pairs. 32999 records in RAM.
INFO 2026-06-08 08:31:52 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr5:141,524,143
INFO 2026-06-08 08:31:52 MarkDuplicates Tracking 1182464 as yet unmatched pairs. 30207 records in RAM.
INFO 2026-06-08 08:31:54 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr5:146,707,227
INFO 2026-06-08 08:31:54 MarkDuplicates Tracking 1179938 as yet unmatched pairs. 27678 records in RAM.
INFO 2026-06-08 08:31:55 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr5:150,375,142
INFO 2026-06-08 08:31:55 MarkDuplicates Tracking 1177704 as yet unmatched pairs. 25444 records in RAM.
INFO 2026-06-08 08:31:58 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 2s. Last read position: chr5:150,405,122
INFO 2026-06-08 08:31:58 MarkDuplicates Tracking 1182764 as yet unmatched pairs. 30504 records in RAM.
INFO 2026-06-08 08:32:01 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 3s. Last read position: chr5:150,733,376
INFO 2026-06-08 08:32:01 MarkDuplicates Tracking 1172046 as yet unmatched pairs. 19786 records in RAM.
INFO 2026-06-08 08:32:03 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:157,029,675
INFO 2026-06-08 08:32:03 MarkDuplicates Tracking 1170242 as yet unmatched pairs. 17981 records in RAM.
INFO 2026-06-08 08:32:05 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr5:171,387,967
INFO 2026-06-08 08:32:05 MarkDuplicates Tracking 1181989 as yet unmatched pairs. 29724 records in RAM.
INFO 2026-06-08 08:32:06 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:171,400,846
INFO 2026-06-08 08:32:06 MarkDuplicates Tracking 1167191 as yet unmatched pairs. 14925 records in RAM.
INFO 2026-06-08 08:32:08 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:177,211,006
INFO 2026-06-08 08:32:08 MarkDuplicates Tracking 1162456 as yet unmatched pairs. 10190 records in RAM.
INFO 2026-06-08 08:32:10 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:179,623,048
INFO 2026-06-08 08:32:10 MarkDuplicates Tracking 1160173 as yet unmatched pairs. 7901 records in RAM.
INFO 2026-06-08 08:32:12 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:179,824,011
INFO 2026-06-08 08:32:12 MarkDuplicates Tracking 1157337 as yet unmatched pairs. 5064 records in RAM.
INFO 2026-06-08 08:32:13 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:180,791,614
INFO 2026-06-08 08:32:13 MarkDuplicates Tracking 1154973 as yet unmatched pairs. 2700 records in RAM.
INFO 2026-06-08 08:32:16 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 2s. Last read position: chr6:3,085,327
INFO 2026-06-08 08:32:16 MarkDuplicates Tracking 1151013 as yet unmatched pairs. 75059 records in RAM.
INFO 2026-06-08 08:32:17 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr6:7,904,619
INFO 2026-06-08 08:32:17 MarkDuplicates Tracking 1149027 as yet unmatched pairs. 73070 records in RAM.
INFO 2026-06-08 08:32:20 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 2s. Last read position: chr6:24,785,647
INFO 2026-06-08 08:32:20 MarkDuplicates Tracking 1146280 as yet unmatched pairs. 70320 records in RAM.
INFO 2026-06-08 08:32:22 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr6:26,198,864
INFO 2026-06-08 08:32:22 MarkDuplicates Tracking 1143664 as yet unmatched pairs. 67697 records in RAM.
INFO 2026-06-08 08:32:23 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr6:27,237,579
INFO 2026-06-08 08:32:23 MarkDuplicates Tracking 1139971 as yet unmatched pairs. 64004 records in RAM.
INFO 2026-06-08 08:32:25 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr6:27,866,818
INFO 2026-06-08 08:32:25 MarkDuplicates Tracking 1138414 as yet unmatched pairs. 62447 records in RAM.
INFO 2026-06-08 08:32:26 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr6:29,945,231
INFO 2026-06-08 08:32:26 MarkDuplicates Tracking 1136283 as yet unmatched pairs. 60315 records in RAM.
INFO 2026-06-08 08:32:28 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 2s. Last read position: chr6:30,894,506
INFO 2026-06-08 08:32:28 MarkDuplicates Tracking 1132370 as yet unmatched pairs. 56399 records in RAM.
INFO 2026-06-08 08:32:30 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr6:31,628,147
INFO 2026-06-08 08:32:30 MarkDuplicates Tracking 1129852 as yet unmatched pairs. 53878 records in RAM.
INFO 2026-06-08 08:32:32 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr6:31,815,738
INFO 2026-06-08 08:32:32 MarkDuplicates Tracking 1128395 as yet unmatched pairs. 52421 records in RAM.
INFO 2026-06-08 08:32:33 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr6:31,817,469
INFO 2026-06-08 08:32:33 MarkDuplicates Tracking 1127239 as yet unmatched pairs. 51265 records in RAM.
INFO 2026-06-08 08:32:35 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,444
INFO 2026-06-08 08:32:35 MarkDuplicates Tracking 1124606 as yet unmatched pairs. 48632 records in RAM.
INFO 2026-06-08 08:32:36 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:32,221,161
INFO 2026-06-08 08:32:36 MarkDuplicates Tracking 1121190 as yet unmatched pairs. 45212 records in RAM.
INFO 2026-06-08 08:32:41 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 4s. Last read position: chr6:33,208,854
INFO 2026-06-08 08:32:41 MarkDuplicates Tracking 1118637 as yet unmatched pairs. 42644 records in RAM.
INFO 2026-06-08 08:32:43 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 2s. Last read position: chr6:34,240,783
INFO 2026-06-08 08:32:43 MarkDuplicates Tracking 1116046 as yet unmatched pairs. 40049 records in RAM.
INFO 2026-06-08 08:32:45 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:36,506,610
INFO 2026-06-08 08:32:45 MarkDuplicates Tracking 1113124 as yet unmatched pairs. 37121 records in RAM.
INFO 2026-06-08 08:32:46 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:42,967,529
INFO 2026-06-08 08:32:46 MarkDuplicates Tracking 1110679 as yet unmatched pairs. 34664 records in RAM.
INFO 2026-06-08 08:32:48 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:44,232,808
INFO 2026-06-08 08:32:48 MarkDuplicates Tracking 1108045 as yet unmatched pairs. 32030 records in RAM.
INFO 2026-06-08 08:32:50 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr6:47,286,174
INFO 2026-06-08 08:32:50 MarkDuplicates Tracking 1106458 as yet unmatched pairs. 30442 records in RAM.
INFO 2026-06-08 08:32:52 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:57,052,991
INFO 2026-06-08 08:32:52 MarkDuplicates Tracking 1102706 as yet unmatched pairs. 26681 records in RAM.
INFO 2026-06-08 08:32:54 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:75,678,674
INFO 2026-06-08 08:32:54 MarkDuplicates Tracking 1100455 as yet unmatched pairs. 24426 records in RAM.
INFO 2026-06-08 08:32:56 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 2s. Last read position: chr6:89,084,231
INFO 2026-06-08 08:32:56 MarkDuplicates Tracking 1097825 as yet unmatched pairs. 21793 records in RAM.
INFO 2026-06-08 08:32:58 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr6:108,663,831
INFO 2026-06-08 08:32:58 MarkDuplicates Tracking 1095443 as yet unmatched pairs. 19406 records in RAM.
INFO 2026-06-08 08:33:00 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:117,547,992
INFO 2026-06-08 08:33:00 MarkDuplicates Tracking 1092477 as yet unmatched pairs. 16435 records in RAM.
INFO 2026-06-08 08:33:02 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:132,816,545
INFO 2026-06-08 08:33:02 MarkDuplicates Tracking 1090649 as yet unmatched pairs. 14607 records in RAM.
INFO 2026-06-08 08:33:03 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:142,415,054
INFO 2026-06-08 08:33:03 MarkDuplicates Tracking 1087405 as yet unmatched pairs. 11360 records in RAM.
INFO 2026-06-08 08:33:05 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:152,236,910
INFO 2026-06-08 08:33:05 MarkDuplicates Tracking 1084708 as yet unmatched pairs. 8661 records in RAM.
INFO 2026-06-08 08:33:06 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:158,771,263
INFO 2026-06-08 08:33:06 MarkDuplicates Tracking 1082556 as yet unmatched pairs. 6502 records in RAM.
INFO 2026-06-08 08:33:08 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:159,783,989
INFO 2026-06-08 08:33:08 MarkDuplicates Tracking 1079950 as yet unmatched pairs. 3895 records in RAM.
INFO 2026-06-08 08:33:10 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr6:169,240,511
INFO 2026-06-08 08:33:10 MarkDuplicates Tracking 1076937 as yet unmatched pairs. 876 records in RAM.
INFO 2026-06-08 08:33:14 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 3s. Last read position: chr7:2,526,817
INFO 2026-06-08 08:33:14 MarkDuplicates Tracking 1073767 as yet unmatched pairs. 68661 records in RAM.
INFO 2026-06-08 08:33:16 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr7:5,527,770
INFO 2026-06-08 08:33:16 MarkDuplicates Tracking 1074849 as yet unmatched pairs. 69741 records in RAM.
INFO 2026-06-08 08:33:17 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,315
INFO 2026-06-08 08:33:17 MarkDuplicates Tracking 1076256 as yet unmatched pairs. 71148 records in RAM.
INFO 2026-06-08 08:33:19 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr7:10,933,472
INFO 2026-06-08 08:33:19 MarkDuplicates Tracking 1065196 as yet unmatched pairs. 60083 records in RAM.
INFO 2026-06-08 08:33:21 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr7:24,861,753
INFO 2026-06-08 08:33:21 MarkDuplicates Tracking 1063068 as yet unmatched pairs. 57952 records in RAM.
INFO 2026-06-08 08:33:23 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr7:32,996,223
INFO 2026-06-08 08:33:23 MarkDuplicates Tracking 1060573 as yet unmatched pairs. 55454 records in RAM.
INFO 2026-06-08 08:33:24 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr7:44,121,843
INFO 2026-06-08 08:33:24 MarkDuplicates Tracking 1057961 as yet unmatched pairs. 52840 records in RAM.
INFO 2026-06-08 08:33:27 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 2s. Last read position: chr7:55,157,697
INFO 2026-06-08 08:33:27 MarkDuplicates Tracking 1055252 as yet unmatched pairs. 50130 records in RAM.
INFO 2026-06-08 08:33:29 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 2s. Last read position: chr7:72,868,835
INFO 2026-06-08 08:33:29 MarkDuplicates Tracking 1052516 as yet unmatched pairs. 47379 records in RAM.
INFO 2026-06-08 08:33:30 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:74,108,977
INFO 2026-06-08 08:33:30 MarkDuplicates Tracking 1050990 as yet unmatched pairs. 45853 records in RAM.
INFO 2026-06-08 08:33:32 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:75,539,351
INFO 2026-06-08 08:33:32 MarkDuplicates Tracking 1049400 as yet unmatched pairs. 44262 records in RAM.
INFO 2026-06-08 08:33:34 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:76,302,969
INFO 2026-06-08 08:33:34 MarkDuplicates Tracking 1053542 as yet unmatched pairs. 48403 records in RAM.
INFO 2026-06-08 08:33:36 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 2s. Last read position: chr7:76,304,044
INFO 2026-06-08 08:33:36 MarkDuplicates Tracking 1047255 as yet unmatched pairs. 42116 records in RAM.
INFO 2026-06-08 08:33:37 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr7:85,381,483
INFO 2026-06-08 08:33:37 MarkDuplicates Tracking 1040777 as yet unmatched pairs. 35637 records in RAM.
INFO 2026-06-08 08:33:39 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:94,400,247
INFO 2026-06-08 08:33:39 MarkDuplicates Tracking 1040343 as yet unmatched pairs. 35203 records in RAM.
INFO 2026-06-08 08:33:41 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr7:94,425,152
INFO 2026-06-08 08:33:41 MarkDuplicates Tracking 1037004 as yet unmatched pairs. 31863 records in RAM.
INFO 2026-06-08 08:33:43 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:99,344,405
INFO 2026-06-08 08:33:43 MarkDuplicates Tracking 1033259 as yet unmatched pairs. 28115 records in RAM.
INFO 2026-06-08 08:33:44 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:100,432,920
INFO 2026-06-08 08:33:44 MarkDuplicates Tracking 1030563 as yet unmatched pairs. 25418 records in RAM.
INFO 2026-06-08 08:33:46 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 2s. Last read position: chr7:102,097,412
INFO 2026-06-08 08:33:46 MarkDuplicates Tracking 1027347 as yet unmatched pairs. 22195 records in RAM.
INFO 2026-06-08 08:33:48 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:103,353,921
INFO 2026-06-08 08:33:48 MarkDuplicates Tracking 1026088 as yet unmatched pairs. 20936 records in RAM.
INFO 2026-06-08 08:33:49 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:112,455,768
INFO 2026-06-08 08:33:49 MarkDuplicates Tracking 1024116 as yet unmatched pairs. 18949 records in RAM.
INFO 2026-06-08 08:33:51 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:127,844,324
INFO 2026-06-08 08:33:51 MarkDuplicates Tracking 1022185 as yet unmatched pairs. 17009 records in RAM.
INFO 2026-06-08 08:33:53 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 2s. Last read position: chr7:133,024,559
INFO 2026-06-08 08:33:53 MarkDuplicates Tracking 1019151 as yet unmatched pairs. 13971 records in RAM.
INFO 2026-06-08 08:33:55 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:138,538,658
INFO 2026-06-08 08:33:55 MarkDuplicates Tracking 1016697 as yet unmatched pairs. 11516 records in RAM.
INFO 2026-06-08 08:33:57 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:140,794,438
INFO 2026-06-08 08:33:57 MarkDuplicates Tracking 1014115 as yet unmatched pairs. 8934 records in RAM.
INFO 2026-06-08 08:33:58 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr7:144,364,024
INFO 2026-06-08 08:33:58 MarkDuplicates Tracking 1011671 as yet unmatched pairs. 6488 records in RAM.
INFO 2026-06-08 08:34:00 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr7:151,074,827
INFO 2026-06-08 08:34:00 MarkDuplicates Tracking 1008977 as yet unmatched pairs. 3793 records in RAM.
INFO 2026-06-08 08:34:02 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:156,950,468
INFO 2026-06-08 08:34:02 MarkDuplicates Tracking 1005816 as yet unmatched pairs. 631 records in RAM.
INFO 2026-06-08 08:34:04 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 2s. Last read position: chr8:11,831,538
INFO 2026-06-08 08:34:04 MarkDuplicates Tracking 1003983 as yet unmatched pairs. 75903 records in RAM.
INFO 2026-06-08 08:34:07 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 2s. Last read position: chr8:18,013,967
INFO 2026-06-08 08:34:07 MarkDuplicates Tracking 1000787 as yet unmatched pairs. 72705 records in RAM.
INFO 2026-06-08 08:34:09 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr8:22,604,805
INFO 2026-06-08 08:34:09 MarkDuplicates Tracking 998759 as yet unmatched pairs. 70676 records in RAM.
INFO 2026-06-08 08:34:10 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr8:25,446,191
INFO 2026-06-08 08:34:10 MarkDuplicates Tracking 994876 as yet unmatched pairs. 66792 records in RAM.
INFO 2026-06-08 08:34:12 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr8:30,812,322
INFO 2026-06-08 08:34:12 MarkDuplicates Tracking 992444 as yet unmatched pairs. 64358 records in RAM.
INFO 2026-06-08 08:34:14 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr8:38,329,491
INFO 2026-06-08 08:34:14 MarkDuplicates Tracking 989568 as yet unmatched pairs. 61482 records in RAM.
INFO 2026-06-08 08:34:16 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr8:38,997,023
INFO 2026-06-08 08:34:16 MarkDuplicates Tracking 987030 as yet unmatched pairs. 58944 records in RAM.
INFO 2026-06-08 08:34:18 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr8:47,737,287
INFO 2026-06-08 08:34:18 MarkDuplicates Tracking 985208 as yet unmatched pairs. 57113 records in RAM.
INFO 2026-06-08 08:34:20 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 2s. Last read position: chr8:54,065,764
INFO 2026-06-08 08:34:20 MarkDuplicates Tracking 982139 as yet unmatched pairs. 54043 records in RAM.
INFO 2026-06-08 08:34:22 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr8:64,596,710
INFO 2026-06-08 08:34:22 MarkDuplicates Tracking 979198 as yet unmatched pairs. 51098 records in RAM.
INFO 2026-06-08 08:34:24 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr8:73,292,718
INFO 2026-06-08 08:34:24 MarkDuplicates Tracking 976788 as yet unmatched pairs. 48688 records in RAM.
INFO 2026-06-08 08:34:25 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr8:93,734,252
INFO 2026-06-08 08:34:25 MarkDuplicates Tracking 974537 as yet unmatched pairs. 46435 records in RAM.
INFO 2026-06-08 08:34:27 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr8:99,641,898
INFO 2026-06-08 08:34:27 MarkDuplicates Tracking 972071 as yet unmatched pairs. 43968 records in RAM.
INFO 2026-06-08 08:34:29 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr8:100,709,510
INFO 2026-06-08 08:34:29 MarkDuplicates Tracking 971597 as yet unmatched pairs. 43492 records in RAM.
INFO 2026-06-08 08:34:31 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr8:100,718,264
INFO 2026-06-08 08:34:31 MarkDuplicates Tracking 971190 as yet unmatched pairs. 43084 records in RAM.
INFO 2026-06-08 08:34:34 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 2s. Last read position: chr8:103,331,383
INFO 2026-06-08 08:34:34 MarkDuplicates Tracking 964255 as yet unmatched pairs. 36149 records in RAM.
INFO 2026-06-08 08:34:35 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr8:122,952,788
INFO 2026-06-08 08:34:35 MarkDuplicates Tracking 961616 as yet unmatched pairs. 33509 records in RAM.
INFO 2026-06-08 08:34:37 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,603
INFO 2026-06-08 08:34:37 MarkDuplicates Tracking 959558 as yet unmatched pairs. 31450 records in RAM.
INFO 2026-06-08 08:34:39 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 1s. Last read position: chr8:141,168,074
INFO 2026-06-08 08:34:39 MarkDuplicates Tracking 956037 as yet unmatched pairs. 27927 records in RAM.
INFO 2026-06-08 08:34:40 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr8:143,650,739
INFO 2026-06-08 08:34:40 MarkDuplicates Tracking 952401 as yet unmatched pairs. 24274 records in RAM.
INFO 2026-06-08 08:34:42 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr8:143,840,133
INFO 2026-06-08 08:34:42 MarkDuplicates Tracking 948956 as yet unmatched pairs. 20829 records in RAM.
INFO 2026-06-08 08:34:43 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,000
INFO 2026-06-08 08:34:43 MarkDuplicates Tracking 950356 as yet unmatched pairs. 22229 records in RAM.
INFO 2026-06-08 08:34:45 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,323
INFO 2026-06-08 08:34:45 MarkDuplicates Tracking 948067 as yet unmatched pairs. 19940 records in RAM.
INFO 2026-06-08 08:34:46 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,456
INFO 2026-06-08 08:34:46 MarkDuplicates Tracking 946227 as yet unmatched pairs. 18100 records in RAM.
INFO 2026-06-08 08:34:47 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,380
INFO 2026-06-08 08:34:47 MarkDuplicates Tracking 947797 as yet unmatched pairs. 19670 records in RAM.
INFO 2026-06-08 08:35:47 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 59s. Last read position: chr8:143,863,528
INFO 2026-06-08 08:35:47 MarkDuplicates Tracking 943431 as yet unmatched pairs. 15304 records in RAM.
INFO 2026-06-08 08:35:48 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,709
INFO 2026-06-08 08:35:48 MarkDuplicates Tracking 943423 as yet unmatched pairs. 15296 records in RAM.
INFO 2026-06-08 08:35:49 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,941
INFO 2026-06-08 08:35:49 MarkDuplicates Tracking 941547 as yet unmatched pairs. 13420 records in RAM.
INFO 2026-06-08 08:35:50 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr8:143,868,871
INFO 2026-06-08 08:35:50 MarkDuplicates Tracking 941293 as yet unmatched pairs. 13166 records in RAM.
INFO 2026-06-08 08:35:52 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr8:143,923,874
INFO 2026-06-08 08:35:52 MarkDuplicates Tracking 936897 as yet unmatched pairs. 8770 records in RAM.
INFO 2026-06-08 08:35:54 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr8:144,276,245
INFO 2026-06-08 08:35:54 MarkDuplicates Tracking 933517 as yet unmatched pairs. 5390 records in RAM.
INFO 2026-06-08 08:35:56 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr8:144,514,436
INFO 2026-06-08 08:35:56 MarkDuplicates Tracking 929753 as yet unmatched pairs. 1624 records in RAM.
INFO 2026-06-08 08:35:58 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr9:5,467,843
INFO 2026-06-08 08:35:58 MarkDuplicates Tracking 926762 as yet unmatched pairs. 52622 records in RAM.
INFO 2026-06-08 08:35:59 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr9:15,527,624
INFO 2026-06-08 08:35:59 MarkDuplicates Tracking 924076 as yet unmatched pairs. 49932 records in RAM.
INFO 2026-06-08 08:36:01 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr9:33,030,600
INFO 2026-06-08 08:36:01 MarkDuplicates Tracking 921640 as yet unmatched pairs. 47489 records in RAM.
INFO 2026-06-08 08:36:02 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr9:35,063,006
INFO 2026-06-08 08:36:02 MarkDuplicates Tracking 919296 as yet unmatched pairs. 45144 records in RAM.
INFO 2026-06-08 08:36:04 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr9:36,665,487
INFO 2026-06-08 08:36:04 MarkDuplicates Tracking 916113 as yet unmatched pairs. 41945 records in RAM.
INFO 2026-06-08 08:36:05 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr9:71,730,721
INFO 2026-06-08 08:36:05 MarkDuplicates Tracking 914146 as yet unmatched pairs. 39976 records in RAM.
INFO 2026-06-08 08:36:07 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr9:83,837,220
INFO 2026-06-08 08:36:07 MarkDuplicates Tracking 911715 as yet unmatched pairs. 37544 records in RAM.
INFO 2026-06-08 08:36:08 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr9:92,210,777
INFO 2026-06-08 08:36:08 MarkDuplicates Tracking 910066 as yet unmatched pairs. 35894 records in RAM.
INFO 2026-06-08 08:36:10 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr9:96,417,668
INFO 2026-06-08 08:36:10 MarkDuplicates Tracking 906633 as yet unmatched pairs. 32460 records in RAM.
INFO 2026-06-08 08:36:12 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr9:104,809,466
INFO 2026-06-08 08:36:12 MarkDuplicates Tracking 903971 as yet unmatched pairs. 29793 records in RAM.
INFO 2026-06-08 08:36:13 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr9:112,250,963
INFO 2026-06-08 08:36:13 MarkDuplicates Tracking 901637 as yet unmatched pairs. 27457 records in RAM.
INFO 2026-06-08 08:36:15 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr9:120,605,238
INFO 2026-06-08 08:36:15 MarkDuplicates Tracking 898569 as yet unmatched pairs. 24389 records in RAM.
INFO 2026-06-08 08:36:16 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr9:125,189,577
INFO 2026-06-08 08:36:16 MarkDuplicates Tracking 895660 as yet unmatched pairs. 21480 records in RAM.
INFO 2026-06-08 08:36:18 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr9:127,927,193
INFO 2026-06-08 08:36:18 MarkDuplicates Tracking 892991 as yet unmatched pairs. 18810 records in RAM.
INFO 2026-06-08 08:36:20 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr9:128,826,090
INFO 2026-06-08 08:36:20 MarkDuplicates Tracking 890364 as yet unmatched pairs. 16180 records in RAM.
INFO 2026-06-08 08:36:21 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr9:130,885,226
INFO 2026-06-08 08:36:21 MarkDuplicates Tracking 887582 as yet unmatched pairs. 13395 records in RAM.
INFO 2026-06-08 08:36:23 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr9:133,334,554
INFO 2026-06-08 08:36:23 MarkDuplicates Tracking 884887 as yet unmatched pairs. 10698 records in RAM.
INFO 2026-06-08 08:36:24 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr9:134,811,512
INFO 2026-06-08 08:36:24 MarkDuplicates Tracking 882136 as yet unmatched pairs. 7946 records in RAM.
INFO 2026-06-08 08:36:26 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr9:136,508,028
INFO 2026-06-08 08:36:26 MarkDuplicates Tracking 879186 as yet unmatched pairs. 4995 records in RAM.
INFO 2026-06-08 08:36:28 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr9:137,236,008
INFO 2026-06-08 08:36:28 MarkDuplicates Tracking 875941 as yet unmatched pairs. 1750 records in RAM.
INFO 2026-06-08 08:36:29 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr10:4,966,051
INFO 2026-06-08 08:36:29 MarkDuplicates Tracking 873265 as yet unmatched pairs. 45937 records in RAM.
INFO 2026-06-08 08:36:31 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr10:7,799,824
INFO 2026-06-08 08:36:31 MarkDuplicates Tracking 871015 as yet unmatched pairs. 43686 records in RAM.
INFO 2026-06-08 08:36:33 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr10:17,236,320
INFO 2026-06-08 08:36:33 MarkDuplicates Tracking 868530 as yet unmatched pairs. 41199 records in RAM.
INFO 2026-06-08 08:36:34 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr10:29,494,935
INFO 2026-06-08 08:36:34 MarkDuplicates Tracking 866002 as yet unmatched pairs. 38669 records in RAM.
INFO 2026-06-08 08:36:36 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr10:32,911,535
INFO 2026-06-08 08:36:36 MarkDuplicates Tracking 864395 as yet unmatched pairs. 37062 records in RAM.
INFO 2026-06-08 08:36:38 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr10:45,788,998
INFO 2026-06-08 08:36:38 MarkDuplicates Tracking 861635 as yet unmatched pairs. 34299 records in RAM.
INFO 2026-06-08 08:36:40 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr10:50,119,664
INFO 2026-06-08 08:36:40 MarkDuplicates Tracking 859869 as yet unmatched pairs. 32527 records in RAM.
INFO 2026-06-08 08:36:41 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr10:68,965,483
INFO 2026-06-08 08:36:41 MarkDuplicates Tracking 857896 as yet unmatched pairs. 30551 records in RAM.
INFO 2026-06-08 08:36:43 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr10:72,274,870
INFO 2026-06-08 08:36:43 MarkDuplicates Tracking 855616 as yet unmatched pairs. 28269 records in RAM.
INFO 2026-06-08 08:36:44 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr10:75,220,754
INFO 2026-06-08 08:36:44 MarkDuplicates Tracking 852588 as yet unmatched pairs. 25241 records in RAM.
INFO 2026-06-08 08:36:46 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr10:80,507,336
INFO 2026-06-08 08:36:46 MarkDuplicates Tracking 850256 as yet unmatched pairs. 22908 records in RAM.
INFO 2026-06-08 08:36:47 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr10:88,046,526
INFO 2026-06-08 08:36:47 MarkDuplicates Tracking 847664 as yet unmatched pairs. 20316 records in RAM.
INFO 2026-06-08 08:36:49 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr10:95,611,331
INFO 2026-06-08 08:36:49 MarkDuplicates Tracking 845109 as yet unmatched pairs. 17752 records in RAM.
INFO 2026-06-08 08:36:50 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr10:98,162,938
INFO 2026-06-08 08:36:50 MarkDuplicates Tracking 842604 as yet unmatched pairs. 15247 records in RAM.
INFO 2026-06-08 08:36:52 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr10:102,138,936
INFO 2026-06-08 08:36:52 MarkDuplicates Tracking 839886 as yet unmatched pairs. 12527 records in RAM.
INFO 2026-06-08 08:36:53 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr10:103,438,732
INFO 2026-06-08 08:36:53 MarkDuplicates Tracking 837060 as yet unmatched pairs. 9701 records in RAM.
INFO 2026-06-08 08:36:55 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr10:114,213,454
INFO 2026-06-08 08:36:55 MarkDuplicates Tracking 834519 as yet unmatched pairs. 7149 records in RAM.
INFO 2026-06-08 08:36:56 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr10:121,485,445
INFO 2026-06-08 08:36:56 MarkDuplicates Tracking 832994 as yet unmatched pairs. 5621 records in RAM.
INFO 2026-06-08 08:36:58 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr10:128,109,309
INFO 2026-06-08 08:36:58 MarkDuplicates Tracking 829631 as yet unmatched pairs. 2249 records in RAM.
INFO 2026-06-08 08:37:00 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 2s. Last read position: chr11:309,114
INFO 2026-06-08 08:37:00 MarkDuplicates Tracking 827846 as yet unmatched pairs. 93362 records in RAM.
INFO 2026-06-08 08:37:02 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr11:774,020
INFO 2026-06-08 08:37:02 MarkDuplicates Tracking 823733 as yet unmatched pairs. 89248 records in RAM.
INFO 2026-06-08 08:37:04 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr11:1,757,521
INFO 2026-06-08 08:37:04 MarkDuplicates Tracking 821378 as yet unmatched pairs. 86893 records in RAM.
INFO 2026-06-08 08:37:05 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr11:2,133,119
INFO 2026-06-08 08:37:05 MarkDuplicates Tracking 822750 as yet unmatched pairs. 88265 records in RAM.
INFO 2026-06-08 08:37:07 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr11:2,135,407
INFO 2026-06-08 08:37:07 MarkDuplicates Tracking 826134 as yet unmatched pairs. 91649 records in RAM.
INFO 2026-06-08 08:37:08 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr11:5,678,365
INFO 2026-06-08 08:37:08 MarkDuplicates Tracking 811015 as yet unmatched pairs. 76530 records in RAM.
INFO 2026-06-08 08:37:10 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr11:9,139,822
INFO 2026-06-08 08:37:10 MarkDuplicates Tracking 808281 as yet unmatched pairs. 73795 records in RAM.
INFO 2026-06-08 08:37:11 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr11:10,805,954
INFO 2026-06-08 08:37:11 MarkDuplicates Tracking 808062 as yet unmatched pairs. 73576 records in RAM.
INFO 2026-06-08 08:37:13 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr11:17,145,867
INFO 2026-06-08 08:37:13 MarkDuplicates Tracking 803262 as yet unmatched pairs. 68773 records in RAM.
INFO 2026-06-08 08:37:14 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr11:33,542,174
INFO 2026-06-08 08:37:14 MarkDuplicates Tracking 800961 as yet unmatched pairs. 66472 records in RAM.
INFO 2026-06-08 08:37:15 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr11:45,885,893
INFO 2026-06-08 08:37:15 MarkDuplicates Tracking 798613 as yet unmatched pairs. 64123 records in RAM.
INFO 2026-06-08 08:37:17 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr11:47,261,328
INFO 2026-06-08 08:37:17 MarkDuplicates Tracking 795962 as yet unmatched pairs. 61471 records in RAM.
INFO 2026-06-08 08:37:19 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr11:57,657,832
INFO 2026-06-08 08:37:19 MarkDuplicates Tracking 793264 as yet unmatched pairs. 58772 records in RAM.
INFO 2026-06-08 08:37:20 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr11:60,919,723
INFO 2026-06-08 08:37:20 MarkDuplicates Tracking 790679 as yet unmatched pairs. 56185 records in RAM.
INFO 2026-06-08 08:37:22 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr11:62,138,750
INFO 2026-06-08 08:37:22 MarkDuplicates Tracking 787965 as yet unmatched pairs. 53452 records in RAM.
INFO 2026-06-08 08:37:23 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr11:62,527,708
INFO 2026-06-08 08:37:23 MarkDuplicates Tracking 786315 as yet unmatched pairs. 51802 records in RAM.
INFO 2026-06-08 08:37:24 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr11:62,601,439
INFO 2026-06-08 08:37:24 MarkDuplicates Tracking 783335 as yet unmatched pairs. 48821 records in RAM.
INFO 2026-06-08 08:37:26 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr11:63,996,939
INFO 2026-06-08 08:37:26 MarkDuplicates Tracking 780403 as yet unmatched pairs. 45888 records in RAM.
INFO 2026-06-08 08:37:27 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr11:64,824,450
INFO 2026-06-08 08:37:27 MarkDuplicates Tracking 777126 as yet unmatched pairs. 42603 records in RAM.
INFO 2026-06-08 08:37:29 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr11:65,536,098
INFO 2026-06-08 08:37:29 MarkDuplicates Tracking 774238 as yet unmatched pairs. 39713 records in RAM.
INFO 2026-06-08 08:37:31 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr11:65,861,050
INFO 2026-06-08 08:37:31 MarkDuplicates Tracking 770774 as yet unmatched pairs. 36247 records in RAM.
INFO 2026-06-08 08:37:32 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr11:66,649,771
INFO 2026-06-08 08:37:32 MarkDuplicates Tracking 767560 as yet unmatched pairs. 33027 records in RAM.
INFO 2026-06-08 08:37:34 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr11:67,500,231
INFO 2026-06-08 08:37:34 MarkDuplicates Tracking 764295 as yet unmatched pairs. 29761 records in RAM.
INFO 2026-06-08 08:37:35 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:69,641,447
INFO 2026-06-08 08:37:35 MarkDuplicates Tracking 764300 as yet unmatched pairs. 29764 records in RAM.
INFO 2026-06-08 08:37:37 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr11:72,015,309
INFO 2026-06-08 08:37:37 MarkDuplicates Tracking 758616 as yet unmatched pairs. 24080 records in RAM.
INFO 2026-06-08 08:37:39 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:74,836,119
INFO 2026-06-08 08:37:39 MarkDuplicates Tracking 755747 as yet unmatched pairs. 21211 records in RAM.
INFO 2026-06-08 08:37:40 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr11:77,960,345
INFO 2026-06-08 08:37:40 MarkDuplicates Tracking 752949 as yet unmatched pairs. 18409 records in RAM.
INFO 2026-06-08 08:37:42 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:95,067,834
INFO 2026-06-08 08:37:42 MarkDuplicates Tracking 750497 as yet unmatched pairs. 15948 records in RAM.
INFO 2026-06-08 08:37:43 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:111,742,007
INFO 2026-06-08 08:37:43 MarkDuplicates Tracking 748062 as yet unmatched pairs. 13510 records in RAM.
INFO 2026-06-08 08:37:45 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:118,493,112
INFO 2026-06-08 08:37:45 MarkDuplicates Tracking 745444 as yet unmatched pairs. 10892 records in RAM.
INFO 2026-06-08 08:37:46 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:119,336,117
INFO 2026-06-08 08:37:46 MarkDuplicates Tracking 742739 as yet unmatched pairs. 8186 records in RAM.
INFO 2026-06-08 08:37:48 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:123,059,697
INFO 2026-06-08 08:37:48 MarkDuplicates Tracking 742786 as yet unmatched pairs. 8232 records in RAM.
INFO 2026-06-08 08:37:49 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:126,413,513
INFO 2026-06-08 08:37:49 MarkDuplicates Tracking 737537 as yet unmatched pairs. 2983 records in RAM.
INFO 2026-06-08 08:37:51 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:134,176,349
INFO 2026-06-08 08:37:51 MarkDuplicates Tracking 734874 as yet unmatched pairs. 319 records in RAM.
INFO 2026-06-08 08:37:53 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 2s. Last read position: chr12:4,276,032
INFO 2026-06-08 08:37:53 MarkDuplicates Tracking 732778 as yet unmatched pairs. 77087 records in RAM.
INFO 2026-06-08 08:37:55 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr12:6,570,570
INFO 2026-06-08 08:37:55 MarkDuplicates Tracking 729769 as yet unmatched pairs. 74078 records in RAM.
INFO 2026-06-08 08:37:56 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr12:6,938,767
INFO 2026-06-08 08:37:56 MarkDuplicates Tracking 727662 as yet unmatched pairs. 71971 records in RAM.
INFO 2026-06-08 08:37:57 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr12:8,930,887
INFO 2026-06-08 08:37:57 MarkDuplicates Tracking 724124 as yet unmatched pairs. 68433 records in RAM.
INFO 2026-06-08 08:37:59 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr12:11,884,443
INFO 2026-06-08 08:37:59 MarkDuplicates Tracking 722391 as yet unmatched pairs. 66692 records in RAM.
INFO 2026-06-08 08:38:01 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr12:19,462,710
INFO 2026-06-08 08:38:01 MarkDuplicates Tracking 719568 as yet unmatched pairs. 63868 records in RAM.
INFO 2026-06-08 08:38:02 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr12:31,293,863
INFO 2026-06-08 08:38:02 MarkDuplicates Tracking 717083 as yet unmatched pairs. 61381 records in RAM.
INFO 2026-06-08 08:38:04 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr12:46,371,178
INFO 2026-06-08 08:38:04 MarkDuplicates Tracking 714720 as yet unmatched pairs. 59016 records in RAM.
INFO 2026-06-08 08:38:05 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr12:49,043,397
INFO 2026-06-08 08:38:05 MarkDuplicates Tracking 711990 as yet unmatched pairs. 56285 records in RAM.
INFO 2026-06-08 08:38:07 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr12:49,269,855
INFO 2026-06-08 08:38:07 MarkDuplicates Tracking 710231 as yet unmatched pairs. 54525 records in RAM.
INFO 2026-06-08 08:38:08 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr12:50,995,784
INFO 2026-06-08 08:38:08 MarkDuplicates Tracking 707623 as yet unmatched pairs. 51910 records in RAM.
INFO 2026-06-08 08:38:10 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr12:52,248,725
INFO 2026-06-08 08:38:10 MarkDuplicates Tracking 704894 as yet unmatched pairs. 49181 records in RAM.
INFO 2026-06-08 08:38:11 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr12:53,290,874
INFO 2026-06-08 08:38:11 MarkDuplicates Tracking 701884 as yet unmatched pairs. 46168 records in RAM.
INFO 2026-06-08 08:38:13 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr12:54,281,914
INFO 2026-06-08 08:38:13 MarkDuplicates Tracking 701984 as yet unmatched pairs. 46267 records in RAM.
INFO 2026-06-08 08:38:15 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr12:55,968,924
INFO 2026-06-08 08:38:15 MarkDuplicates Tracking 697043 as yet unmatched pairs. 41323 records in RAM.
INFO 2026-06-08 08:38:16 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr12:56,273,046
INFO 2026-06-08 08:38:16 MarkDuplicates Tracking 694772 as yet unmatched pairs. 39050 records in RAM.
INFO 2026-06-08 08:38:18 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr12:56,713,562
INFO 2026-06-08 08:38:18 MarkDuplicates Tracking 692089 as yet unmatched pairs. 36364 records in RAM.
INFO 2026-06-08 08:38:20 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr12:57,154,483
INFO 2026-06-08 08:38:20 MarkDuplicates Tracking 689328 as yet unmatched pairs. 33602 records in RAM.
INFO 2026-06-08 08:38:21 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr12:57,612,939
INFO 2026-06-08 08:38:21 MarkDuplicates Tracking 686366 as yet unmatched pairs. 30640 records in RAM.
INFO 2026-06-08 08:38:23 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr12:67,306,475
INFO 2026-06-08 08:38:23 MarkDuplicates Tracking 684205 as yet unmatched pairs. 28478 records in RAM.
INFO 2026-06-08 08:38:24 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr12:76,053,853
INFO 2026-06-08 08:38:24 MarkDuplicates Tracking 682664 as yet unmatched pairs. 26928 records in RAM.
INFO 2026-06-08 08:38:26 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr12:95,062,666
INFO 2026-06-08 08:38:26 MarkDuplicates Tracking 679492 as yet unmatched pairs. 23756 records in RAM.
INFO 2026-06-08 08:38:27 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr12:103,943,826
INFO 2026-06-08 08:38:27 MarkDuplicates Tracking 677259 as yet unmatched pairs. 21521 records in RAM.
INFO 2026-06-08 08:38:28 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr12:109,486,010
INFO 2026-06-08 08:38:28 MarkDuplicates Tracking 674749 as yet unmatched pairs. 19011 records in RAM.
INFO 2026-06-08 08:38:30 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr12:112,078,655
INFO 2026-06-08 08:38:30 MarkDuplicates Tracking 672042 as yet unmatched pairs. 16304 records in RAM.
INFO 2026-06-08 08:38:32 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr12:114,677,603
INFO 2026-06-08 08:38:32 MarkDuplicates Tracking 669798 as yet unmatched pairs. 14058 records in RAM.
INFO 2026-06-08 08:38:33 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr12:120,178,852
INFO 2026-06-08 08:38:33 MarkDuplicates Tracking 667260 as yet unmatched pairs. 11520 records in RAM.
INFO 2026-06-08 08:38:35 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr12:121,810,098
INFO 2026-06-08 08:38:35 MarkDuplicates Tracking 663927 as yet unmatched pairs. 8187 records in RAM.
INFO 2026-06-08 08:38:36 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr12:123,590,340
INFO 2026-06-08 08:38:36 MarkDuplicates Tracking 661292 as yet unmatched pairs. 5551 records in RAM.
INFO 2026-06-08 08:38:38 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr12:131,961,885
INFO 2026-06-08 08:38:38 MarkDuplicates Tracking 658451 as yet unmatched pairs. 2710 records in RAM.
INFO 2026-06-08 08:38:40 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 2s. Last read position: chr13:19,751,186
INFO 2026-06-08 08:38:40 MarkDuplicates Tracking 655655 as yet unmatched pairs. 22226 records in RAM.
INFO 2026-06-08 08:38:42 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr13:20,961,823
INFO 2026-06-08 08:38:42 MarkDuplicates Tracking 653326 as yet unmatched pairs. 19872 records in RAM.
INFO 2026-06-08 08:38:43 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr13:30,461,462
INFO 2026-06-08 08:38:43 MarkDuplicates Tracking 651037 as yet unmatched pairs. 17581 records in RAM.
INFO 2026-06-08 08:38:45 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr13:40,560,626
INFO 2026-06-08 08:38:45 MarkDuplicates Tracking 648714 as yet unmatched pairs. 15256 records in RAM.
INFO 2026-06-08 08:38:46 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr13:46,787,068
INFO 2026-06-08 08:38:46 MarkDuplicates Tracking 646266 as yet unmatched pairs. 12808 records in RAM.
INFO 2026-06-08 08:38:48 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr13:73,062,474
INFO 2026-06-08 08:38:48 MarkDuplicates Tracking 643606 as yet unmatched pairs. 10145 records in RAM.
INFO 2026-06-08 08:38:49 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr13:98,439,992
INFO 2026-06-08 08:38:49 MarkDuplicates Tracking 641158 as yet unmatched pairs. 7693 records in RAM.
INFO 2026-06-08 08:38:51 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr13:110,183,055
INFO 2026-06-08 08:38:51 MarkDuplicates Tracking 638595 as yet unmatched pairs. 5129 records in RAM.
INFO 2026-06-08 08:38:52 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr13:112,881,998
INFO 2026-06-08 08:38:52 MarkDuplicates Tracking 634848 as yet unmatched pairs. 1382 records in RAM.
INFO 2026-06-08 08:38:54 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 2s. Last read position: chr14:21,091,044
INFO 2026-06-08 08:38:54 MarkDuplicates Tracking 632018 as yet unmatched pairs. 62128 records in RAM.
INFO 2026-06-08 08:38:56 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr14:22,906,291
INFO 2026-06-08 08:38:56 MarkDuplicates Tracking 629444 as yet unmatched pairs. 59550 records in RAM.
INFO 2026-06-08 08:38:57 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr14:23,566,294
INFO 2026-06-08 08:38:57 MarkDuplicates Tracking 626699 as yet unmatched pairs. 56805 records in RAM.
INFO 2026-06-08 08:38:59 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr14:23,644,369
INFO 2026-06-08 08:38:59 MarkDuplicates Tracking 627707 as yet unmatched pairs. 57812 records in RAM.
INFO 2026-06-08 08:39:00 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr14:24,163,460
INFO 2026-06-08 08:39:00 MarkDuplicates Tracking 620764 as yet unmatched pairs. 50869 records in RAM.
INFO 2026-06-08 08:39:02 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr14:31,128,976
INFO 2026-06-08 08:39:02 MarkDuplicates Tracking 617956 as yet unmatched pairs. 48060 records in RAM.
INFO 2026-06-08 08:39:03 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr14:39,279,346
INFO 2026-06-08 08:39:03 MarkDuplicates Tracking 615614 as yet unmatched pairs. 45715 records in RAM.
INFO 2026-06-08 08:39:05 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr14:50,464,107
INFO 2026-06-08 08:39:05 MarkDuplicates Tracking 613511 as yet unmatched pairs. 43601 records in RAM.
INFO 2026-06-08 08:39:06 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr14:56,579,909
INFO 2026-06-08 08:39:06 MarkDuplicates Tracking 610987 as yet unmatched pairs. 41077 records in RAM.
INFO 2026-06-08 08:39:09 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 2s. Last read position: chr14:64,522,881
INFO 2026-06-08 08:39:09 MarkDuplicates Tracking 608425 as yet unmatched pairs. 38515 records in RAM.
INFO 2026-06-08 08:39:10 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr14:69,771,005
INFO 2026-06-08 08:39:10 MarkDuplicates Tracking 605821 as yet unmatched pairs. 35911 records in RAM.
INFO 2026-06-08 08:39:12 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr14:74,798,796
INFO 2026-06-08 08:39:12 MarkDuplicates Tracking 603110 as yet unmatched pairs. 33195 records in RAM.
INFO 2026-06-08 08:39:13 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr14:80,756,930
INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 600434 as yet unmatched pairs. 30511 records in RAM.
INFO 2026-06-08 08:39:15 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr14:92,651,802
INFO 2026-06-08 08:39:15 MarkDuplicates Tracking 597778 as yet unmatched pairs. 27850 records in RAM.
INFO 2026-06-08 08:39:16 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr14:99,603,344
INFO 2026-06-08 08:39:16 MarkDuplicates Tracking 595177 as yet unmatched pairs. 25213 records in RAM.
INFO 2026-06-08 08:39:17 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr14:102,083,181
INFO 2026-06-08 08:39:17 MarkDuplicates Tracking 593324 as yet unmatched pairs. 23360 records in RAM.
INFO 2026-06-08 08:39:19 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr14:103,679,442
INFO 2026-06-08 08:39:19 MarkDuplicates Tracking 589693 as yet unmatched pairs. 19728 records in RAM.
INFO 2026-06-08 08:39:20 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr14:105,587,132
INFO 2026-06-08 08:39:20 MarkDuplicates Tracking 587225 as yet unmatched pairs. 17258 records in RAM.
INFO 2026-06-08 08:39:22 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr14:105,625,906
INFO 2026-06-08 08:39:22 MarkDuplicates Tracking 586265 as yet unmatched pairs. 16293 records in RAM.
INFO 2026-06-08 08:39:23 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,335
INFO 2026-06-08 08:39:23 MarkDuplicates Tracking 588070 as yet unmatched pairs. 18094 records in RAM.
INFO 2026-06-08 08:39:25 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr14:105,644,084
INFO 2026-06-08 08:39:25 MarkDuplicates Tracking 585860 as yet unmatched pairs. 15884 records in RAM.
INFO 2026-06-08 08:39:26 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr14:105,668,546
INFO 2026-06-08 08:39:26 MarkDuplicates Tracking 581165 as yet unmatched pairs. 11189 records in RAM.
INFO 2026-06-08 08:39:28 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,452
INFO 2026-06-08 08:39:28 MarkDuplicates Tracking 579995 as yet unmatched pairs. 10019 records in RAM.
INFO 2026-06-08 08:39:29 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,669
INFO 2026-06-08 08:39:29 MarkDuplicates Tracking 580834 as yet unmatched pairs. 10857 records in RAM.
INFO 2026-06-08 08:39:31 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,815
INFO 2026-06-08 08:39:31 MarkDuplicates Tracking 584255 as yet unmatched pairs. 14277 records in RAM.
INFO 2026-06-08 08:39:32 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr14:105,769,447
INFO 2026-06-08 08:39:32 MarkDuplicates Tracking 573455 as yet unmatched pairs. 3477 records in RAM.
INFO 2026-06-08 08:39:34 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr14:105,771,297
INFO 2026-06-08 08:39:34 MarkDuplicates Tracking 572530 as yet unmatched pairs. 2550 records in RAM.
INFO 2026-06-08 08:39:36 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr15:28,233,225
INFO 2026-06-08 08:39:36 MarkDuplicates Tracking 568738 as yet unmatched pairs. 41739 records in RAM.
INFO 2026-06-08 08:39:37 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr15:34,982,758
INFO 2026-06-08 08:39:37 MarkDuplicates Tracking 566549 as yet unmatched pairs. 39546 records in RAM.
INFO 2026-06-08 08:39:39 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr15:40,853,224
INFO 2026-06-08 08:39:39 MarkDuplicates Tracking 564026 as yet unmatched pairs. 37021 records in RAM.
INFO 2026-06-08 08:39:40 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr15:41,919,450
INFO 2026-06-08 08:39:40 MarkDuplicates Tracking 561247 as yet unmatched pairs. 34242 records in RAM.
INFO 2026-06-08 08:39:42 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr15:43,771,113
INFO 2026-06-08 08:39:42 MarkDuplicates Tracking 559144 as yet unmatched pairs. 32139 records in RAM.
INFO 2026-06-08 08:39:44 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr15:45,366,380
INFO 2026-06-08 08:39:44 MarkDuplicates Tracking 556301 as yet unmatched pairs. 29296 records in RAM.
INFO 2026-06-08 08:39:45 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr15:52,601,128
INFO 2026-06-08 08:39:45 MarkDuplicates Tracking 553440 as yet unmatched pairs. 26433 records in RAM.
INFO 2026-06-08 08:39:47 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr15:58,665,106
INFO 2026-06-08 08:39:47 MarkDuplicates Tracking 551552 as yet unmatched pairs. 24545 records in RAM.
INFO 2026-06-08 08:39:48 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr15:63,643,007
INFO 2026-06-08 08:39:48 MarkDuplicates Tracking 548587 as yet unmatched pairs. 21580 records in RAM.
INFO 2026-06-08 08:39:50 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr15:66,326,014
INFO 2026-06-08 08:39:50 MarkDuplicates Tracking 545821 as yet unmatched pairs. 18811 records in RAM.
INFO 2026-06-08 08:39:51 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr15:71,164,875
INFO 2026-06-08 08:39:51 MarkDuplicates Tracking 543119 as yet unmatched pairs. 16109 records in RAM.
INFO 2026-06-08 08:39:52 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr15:74,043,024
INFO 2026-06-08 08:39:52 MarkDuplicates Tracking 540687 as yet unmatched pairs. 13669 records in RAM.
INFO 2026-06-08 08:39:54 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr15:76,225,862
INFO 2026-06-08 08:39:54 MarkDuplicates Tracking 537606 as yet unmatched pairs. 10587 records in RAM.
INFO 2026-06-08 08:39:55 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr15:78,937,393
INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 535376 as yet unmatched pairs. 8356 records in RAM.
INFO 2026-06-08 08:39:57 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr15:88,630,163
INFO 2026-06-08 08:39:57 MarkDuplicates Tracking 532339 as yet unmatched pairs. 5317 records in RAM.
INFO 2026-06-08 08:39:58 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr15:90,790,709
INFO 2026-06-08 08:39:58 MarkDuplicates Tracking 529777 as yet unmatched pairs. 2754 records in RAM.
INFO 2026-06-08 08:40:01 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 2s. Last read position: chr16:16,720
INFO 2026-06-08 08:40:01 MarkDuplicates Tracking 527155 as yet unmatched pairs. 68814 records in RAM.
INFO 2026-06-08 08:40:03 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr16:1,219,008
INFO 2026-06-08 08:40:03 MarkDuplicates Tracking 523812 as yet unmatched pairs. 65460 records in RAM.
INFO 2026-06-08 08:40:04 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr16:2,058,833
INFO 2026-06-08 08:40:04 MarkDuplicates Tracking 520478 as yet unmatched pairs. 62122 records in RAM.
INFO 2026-06-08 08:40:05 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr16:2,763,776
INFO 2026-06-08 08:40:05 MarkDuplicates Tracking 517829 as yet unmatched pairs. 59472 records in RAM.
INFO 2026-06-08 08:40:07 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr16:3,677,554
INFO 2026-06-08 08:40:07 MarkDuplicates Tracking 514761 as yet unmatched pairs. 56403 records in RAM.
INFO 2026-06-08 08:40:08 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr16:8,921,156
INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 511940 as yet unmatched pairs. 53581 records in RAM.
INFO 2026-06-08 08:40:10 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr16:14,875,162
INFO 2026-06-08 08:40:10 MarkDuplicates Tracking 509419 as yet unmatched pairs. 51035 records in RAM.
INFO 2026-06-08 08:40:11 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr16:16,287,765
INFO 2026-06-08 08:40:11 MarkDuplicates Tracking 507778 as yet unmatched pairs. 49394 records in RAM.
INFO 2026-06-08 08:40:12 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr16:18,514,377
INFO 2026-06-08 08:40:12 MarkDuplicates Tracking 507161 as yet unmatched pairs. 48776 records in RAM.
INFO 2026-06-08 08:40:14 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr16:21,404,769
INFO 2026-06-08 08:40:14 MarkDuplicates Tracking 505180 as yet unmatched pairs. 46794 records in RAM.
INFO 2026-06-08 08:40:15 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr16:22,471,828
INFO 2026-06-08 08:40:15 MarkDuplicates Tracking 503560 as yet unmatched pairs. 45174 records in RAM.
INFO 2026-06-08 08:40:16 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr16:24,556,322
INFO 2026-06-08 08:40:16 MarkDuplicates Tracking 501837 as yet unmatched pairs. 43451 records in RAM.
INFO 2026-06-08 08:40:18 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr16:28,734,661
INFO 2026-06-08 08:40:18 MarkDuplicates Tracking 499684 as yet unmatched pairs. 41298 records in RAM.
INFO 2026-06-08 08:40:19 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr16:29,485,295
INFO 2026-06-08 08:40:19 MarkDuplicates Tracking 497995 as yet unmatched pairs. 39608 records in RAM.
INFO 2026-06-08 08:40:20 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr16:30,069,373
INFO 2026-06-08 08:40:20 MarkDuplicates Tracking 496331 as yet unmatched pairs. 37944 records in RAM.
INFO 2026-06-08 08:40:22 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr16:30,429,133
INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 493456 as yet unmatched pairs. 35068 records in RAM.
INFO 2026-06-08 08:40:23 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr16:31,091,264
INFO 2026-06-08 08:40:23 MarkDuplicates Tracking 491637 as yet unmatched pairs. 33248 records in RAM.
INFO 2026-06-08 08:40:24 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr16:46,682,114
INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 488614 as yet unmatched pairs. 30225 records in RAM.
INFO 2026-06-08 08:40:26 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr16:55,484,047
INFO 2026-06-08 08:40:26 MarkDuplicates Tracking 485869 as yet unmatched pairs. 27466 records in RAM.
INFO 2026-06-08 08:40:27 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr16:58,543,361
INFO 2026-06-08 08:40:27 MarkDuplicates Tracking 482837 as yet unmatched pairs. 24434 records in RAM.
INFO 2026-06-08 08:40:31 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 3s. Last read position: chr16:67,637,713
INFO 2026-06-08 08:40:31 MarkDuplicates Tracking 479631 as yet unmatched pairs. 21226 records in RAM.
INFO 2026-06-08 08:40:32 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr16:68,823,395
INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 476734 as yet unmatched pairs. 18329 records in RAM.
INFO 2026-06-08 08:40:33 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr16:70,329,356
INFO 2026-06-08 08:40:33 MarkDuplicates Tracking 474255 as yet unmatched pairs. 15850 records in RAM.
INFO 2026-06-08 08:40:35 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr16:72,796,485
INFO 2026-06-08 08:40:35 MarkDuplicates Tracking 471633 as yet unmatched pairs. 13227 records in RAM.
INFO 2026-06-08 08:40:36 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr16:77,195,548
INFO 2026-06-08 08:40:36 MarkDuplicates Tracking 468850 as yet unmatched pairs. 10437 records in RAM.
INFO 2026-06-08 08:40:38 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr16:87,335,391
INFO 2026-06-08 08:40:38 MarkDuplicates Tracking 465931 as yet unmatched pairs. 7514 records in RAM.
INFO 2026-06-08 08:40:39 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr16:88,809,701
INFO 2026-06-08 08:40:39 MarkDuplicates Tracking 464271 as yet unmatched pairs. 5849 records in RAM.
INFO 2026-06-08 08:40:42 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 2s. Last read position: chr16:89,737,989
INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 459855 as yet unmatched pairs. 1432 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 2s. Last read position: chr17:1,361,190
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 460122 as yet unmatched pairs. 158549 records in RAM.
INFO 2026-06-08 08:40:46 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr17:1,679,769
INFO 2026-06-08 08:40:46 MarkDuplicates Tracking 453955 as yet unmatched pairs. 152382 records in RAM.
INFO 2026-06-08 08:40:48 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr17:3,663,697
INFO 2026-06-08 08:40:48 MarkDuplicates Tracking 451041 as yet unmatched pairs. 149467 records in RAM.
INFO 2026-06-08 08:40:49 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr17:4,942,390
INFO 2026-06-08 08:40:49 MarkDuplicates Tracking 447997 as yet unmatched pairs. 146420 records in RAM.
INFO 2026-06-08 08:40:51 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr17:7,220,636
INFO 2026-06-08 08:40:51 MarkDuplicates Tracking 445433 as yet unmatched pairs. 143856 records in RAM.
INFO 2026-06-08 08:40:52 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr17:7,456,588
INFO 2026-06-08 08:40:52 MarkDuplicates Tracking 442584 as yet unmatched pairs. 141005 records in RAM.
INFO 2026-06-08 08:40:54 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr17:7,585,752
INFO 2026-06-08 08:40:54 MarkDuplicates Tracking 440271 as yet unmatched pairs. 138692 records in RAM.
INFO 2026-06-08 08:40:55 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr17:8,267,577
INFO 2026-06-08 08:40:55 MarkDuplicates Tracking 437596 as yet unmatched pairs. 136005 records in RAM.
INFO 2026-06-08 08:40:57 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr17:16,153,339
INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 435209 as yet unmatched pairs. 133618 records in RAM.
INFO 2026-06-08 08:40:58 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr17:17,817,831
INFO 2026-06-08 08:40:58 MarkDuplicates Tracking 432471 as yet unmatched pairs. 130880 records in RAM.
INFO 2026-06-08 08:41:00 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr17:21,042,735
INFO 2026-06-08 08:41:00 MarkDuplicates Tracking 429638 as yet unmatched pairs. 128047 records in RAM.
INFO 2026-06-08 08:41:02 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 2s. Last read position: chr17:28,720,018
INFO 2026-06-08 08:41:02 MarkDuplicates Tracking 427127 as yet unmatched pairs. 125536 records in RAM.
INFO 2026-06-08 08:41:03 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr17:30,988,076
INFO 2026-06-08 08:41:03 MarkDuplicates Tracking 424540 as yet unmatched pairs. 122948 records in RAM.
INFO 2026-06-08 08:41:05 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr17:35,817,719
INFO 2026-06-08 08:41:05 MarkDuplicates Tracking 423013 as yet unmatched pairs. 121419 records in RAM.
INFO 2026-06-08 08:41:06 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr17:38,134,641
INFO 2026-06-08 08:41:06 MarkDuplicates Tracking 420000 as yet unmatched pairs. 118406 records in RAM.
INFO 2026-06-08 08:41:07 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr17:38,806,918
INFO 2026-06-08 08:41:07 MarkDuplicates Tracking 417133 as yet unmatched pairs. 115539 records in RAM.
INFO 2026-06-08 08:41:09 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr17:39,710,135
INFO 2026-06-08 08:41:09 MarkDuplicates Tracking 415196 as yet unmatched pairs. 113600 records in RAM.
INFO 2026-06-08 08:41:11 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr17:40,026,704
INFO 2026-06-08 08:41:11 MarkDuplicates Tracking 411505 as yet unmatched pairs. 109909 records in RAM.
INFO 2026-06-08 08:41:12 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr17:40,882,571
INFO 2026-06-08 08:41:12 MarkDuplicates Tracking 409622 as yet unmatched pairs. 108026 records in RAM.
INFO 2026-06-08 08:41:14 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr17:41,524,152
INFO 2026-06-08 08:41:14 MarkDuplicates Tracking 408689 as yet unmatched pairs. 107092 records in RAM.
INFO 2026-06-08 08:41:16 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr17:41,622,366
INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 402680 as yet unmatched pairs. 101082 records in RAM.
INFO 2026-06-08 08:41:17 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr17:42,300,711
INFO 2026-06-08 08:41:17 MarkDuplicates Tracking 399213 as yet unmatched pairs. 97615 records in RAM.
INFO 2026-06-08 08:41:19 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr17:43,093,912
INFO 2026-06-08 08:41:19 MarkDuplicates Tracking 396300 as yet unmatched pairs. 94702 records in RAM.
INFO 2026-06-08 08:41:21 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 2s. Last read position: chr17:44,406,050
INFO 2026-06-08 08:41:21 MarkDuplicates Tracking 393384 as yet unmatched pairs. 91786 records in RAM.
INFO 2026-06-08 08:41:23 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr17:46,935,248
INFO 2026-06-08 08:41:23 MarkDuplicates Tracking 391181 as yet unmatched pairs. 89582 records in RAM.
INFO 2026-06-08 08:41:24 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr17:49,046,333
INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 388586 as yet unmatched pairs. 86987 records in RAM.
INFO 2026-06-08 08:41:26 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,491
INFO 2026-06-08 08:41:26 MarkDuplicates Tracking 389471 as yet unmatched pairs. 87872 records in RAM.
INFO 2026-06-08 08:41:27 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,494
INFO 2026-06-08 08:41:27 MarkDuplicates Tracking 396983 as yet unmatched pairs. 95384 records in RAM.
INFO 2026-06-08 08:41:29 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,577
INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 394744 as yet unmatched pairs. 93145 records in RAM.
INFO 2026-06-08 08:41:30 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,390
INFO 2026-06-08 08:41:30 MarkDuplicates Tracking 382756 as yet unmatched pairs. 81157 records in RAM.
INFO 2026-06-08 08:41:32 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,007
INFO 2026-06-08 08:41:32 MarkDuplicates Tracking 383835 as yet unmatched pairs. 82236 records in RAM.
INFO 2026-06-08 08:41:34 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,886
INFO 2026-06-08 08:41:34 MarkDuplicates Tracking 381080 as yet unmatched pairs. 79481 records in RAM.
INFO 2026-06-08 08:41:35 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,511
INFO 2026-06-08 08:41:35 MarkDuplicates Tracking 376116 as yet unmatched pairs. 74517 records in RAM.
INFO 2026-06-08 08:41:37 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,982
INFO 2026-06-08 08:41:37 MarkDuplicates Tracking 380131 as yet unmatched pairs. 78532 records in RAM.
INFO 2026-06-08 08:41:40 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,432
INFO 2026-06-08 08:41:40 MarkDuplicates Tracking 380629 as yet unmatched pairs. 79030 records in RAM.
INFO 2026-06-08 08:41:41 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,239
INFO 2026-06-08 08:41:41 MarkDuplicates Tracking 372242 as yet unmatched pairs. 70643 records in RAM.
INFO 2026-06-08 08:41:43 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,947
INFO 2026-06-08 08:41:43 MarkDuplicates Tracking 369027 as yet unmatched pairs. 67428 records in RAM.
INFO 2026-06-08 08:41:44 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,335
INFO 2026-06-08 08:41:44 MarkDuplicates Tracking 383388 as yet unmatched pairs. 81788 records in RAM.
INFO 2026-06-08 08:41:46 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,034
INFO 2026-06-08 08:41:46 MarkDuplicates Tracking 383300 as yet unmatched pairs. 81700 records in RAM.
INFO 2026-06-08 08:41:48 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,176
INFO 2026-06-08 08:41:48 MarkDuplicates Tracking 355057 as yet unmatched pairs. 53457 records in RAM.
INFO 2026-06-08 08:41:49 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,564
INFO 2026-06-08 08:41:49 MarkDuplicates Tracking 347036 as yet unmatched pairs. 45435 records in RAM.
INFO 2026-06-08 08:41:51 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr17:50,750,534
INFO 2026-06-08 08:41:51 MarkDuplicates Tracking 339800 as yet unmatched pairs. 38198 records in RAM.
INFO 2026-06-08 08:41:52 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr17:58,511,497
INFO 2026-06-08 08:41:52 MarkDuplicates Tracking 337052 as yet unmatched pairs. 35441 records in RAM.
INFO 2026-06-08 08:41:54 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr17:59,685,054
INFO 2026-06-08 08:41:54 MarkDuplicates Tracking 335683 as yet unmatched pairs. 34072 records in RAM.
INFO 2026-06-08 08:41:56 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr17:63,437,478
INFO 2026-06-08 08:41:56 MarkDuplicates Tracking 331790 as yet unmatched pairs. 30179 records in RAM.
INFO 2026-06-08 08:41:58 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr17:67,344,665
INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 329468 as yet unmatched pairs. 27856 records in RAM.
INFO 2026-06-08 08:41:59 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr17:72,659,552
INFO 2026-06-08 08:41:59 MarkDuplicates Tracking 326769 as yet unmatched pairs. 25156 records in RAM.
INFO 2026-06-08 08:42:01 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr17:75,570,376
INFO 2026-06-08 08:42:01 MarkDuplicates Tracking 324253 as yet unmatched pairs. 22637 records in RAM.
INFO 2026-06-08 08:42:02 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr17:76,009,579
INFO 2026-06-08 08:42:02 MarkDuplicates Tracking 321085 as yet unmatched pairs. 19468 records in RAM.
INFO 2026-06-08 08:42:04 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr17:77,482,208
INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 319238 as yet unmatched pairs. 17621 records in RAM.
INFO 2026-06-08 08:42:05 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr17:80,144,192
INFO 2026-06-08 08:42:05 MarkDuplicates Tracking 314925 as yet unmatched pairs. 13308 records in RAM.
INFO 2026-06-08 08:42:07 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr17:81,511,362
INFO 2026-06-08 08:42:07 MarkDuplicates Tracking 312675 as yet unmatched pairs. 11058 records in RAM.
INFO 2026-06-08 08:42:08 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr17:81,868,814
INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 309478 as yet unmatched pairs. 7861 records in RAM.
INFO 2026-06-08 08:42:09 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr17:82,084,666
INFO 2026-06-08 08:42:09 MarkDuplicates Tracking 306292 as yet unmatched pairs. 4675 records in RAM.
INFO 2026-06-08 08:42:11 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr17:82,582,826
INFO 2026-06-08 08:42:11 MarkDuplicates Tracking 302437 as yet unmatched pairs. 820 records in RAM.
INFO 2026-06-08 08:42:12 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr18:8,069,848
INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 300194 as yet unmatched pairs. 16545 records in RAM.
INFO 2026-06-08 08:42:14 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr18:12,359,979
INFO 2026-06-08 08:42:14 MarkDuplicates Tracking 297615 as yet unmatched pairs. 13965 records in RAM.
INFO 2026-06-08 08:42:16 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr18:31,931,439
INFO 2026-06-08 08:42:16 MarkDuplicates Tracking 294972 as yet unmatched pairs. 11320 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr18:46,089,694
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 293561 as yet unmatched pairs. 9908 records in RAM.
INFO 2026-06-08 08:42:19 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr18:51,048,770
INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 290033 as yet unmatched pairs. 6380 records in RAM.
INFO 2026-06-08 08:42:21 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 2s. Last read position: chr18:62,227,656
INFO 2026-06-08 08:42:21 MarkDuplicates Tracking 287778 as yet unmatched pairs. 4125 records in RAM.
INFO 2026-06-08 08:44:21 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 119s. Last read position: chr18:76,441,322
INFO 2026-06-08 08:44:21 MarkDuplicates Tracking 284689 as yet unmatched pairs. 1036 records in RAM.
INFO 2026-06-08 08:44:24 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 3s. Last read position: chr19:806,544
INFO 2026-06-08 08:44:24 MarkDuplicates Tracking 281753 as yet unmatched pairs. 115790 records in RAM.
INFO 2026-06-08 08:44:25 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 1s. Last read position: chr19:1,241,818
INFO 2026-06-08 08:44:25 MarkDuplicates Tracking 278781 as yet unmatched pairs. 112818 records in RAM.
INFO 2026-06-08 08:44:27 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 1s. Last read position: chr19:1,826,956
INFO 2026-06-08 08:44:27 MarkDuplicates Tracking 274771 as yet unmatched pairs. 108805 records in RAM.
INFO 2026-06-08 08:44:29 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 1s. Last read position: chr19:2,343,211
INFO 2026-06-08 08:44:29 MarkDuplicates Tracking 271930 as yet unmatched pairs. 105964 records in RAM.
INFO 2026-06-08 08:44:30 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr19:3,984,197
INFO 2026-06-08 08:44:30 MarkDuplicates Tracking 269610 as yet unmatched pairs. 103643 records in RAM.
INFO 2026-06-08 08:44:32 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr19:5,110,715
INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 265348 as yet unmatched pairs. 99380 records in RAM.
INFO 2026-06-08 08:44:33 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 1s. Last read position: chr19:6,457,575
INFO 2026-06-08 08:44:33 MarkDuplicates Tracking 262372 as yet unmatched pairs. 96403 records in RAM.
INFO 2026-06-08 08:44:35 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr19:7,967,563
INFO 2026-06-08 08:44:35 MarkDuplicates Tracking 259306 as yet unmatched pairs. 93337 records in RAM.
INFO 2026-06-08 08:44:36 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr19:10,106,642
INFO 2026-06-08 08:44:36 MarkDuplicates Tracking 256322 as yet unmatched pairs. 90351 records in RAM.
INFO 2026-06-08 08:44:38 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:30s. Time for last 1,000,000: 1s. Last read position: chr19:10,683,493
INFO 2026-06-08 08:44:38 MarkDuplicates Tracking 253328 as yet unmatched pairs. 87357 records in RAM.
INFO 2026-06-08 08:44:39 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 1s. Last read position: chr19:11,448,950
INFO 2026-06-08 08:44:39 MarkDuplicates Tracking 250476 as yet unmatched pairs. 84505 records in RAM.
INFO 2026-06-08 08:44:41 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr19:12,792,468
INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 247595 as yet unmatched pairs. 81624 records in RAM.
INFO 2026-06-08 08:44:42 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr19:14,070,577
INFO 2026-06-08 08:44:42 MarkDuplicates Tracking 244287 as yet unmatched pairs. 78316 records in RAM.
INFO 2026-06-08 08:44:44 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 1s. Last read position: chr19:14,518,101
INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 241964 as yet unmatched pairs. 75993 records in RAM.
INFO 2026-06-08 08:44:45 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr19:15,191,619
INFO 2026-06-08 08:44:45 MarkDuplicates Tracking 238964 as yet unmatched pairs. 72992 records in RAM.
INFO 2026-06-08 08:44:47 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr19:15,425,277
INFO 2026-06-08 08:44:47 MarkDuplicates Tracking 235736 as yet unmatched pairs. 69764 records in RAM.
INFO 2026-06-08 08:44:48 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr19:17,240,522
INFO 2026-06-08 08:44:48 MarkDuplicates Tracking 232558 as yet unmatched pairs. 66584 records in RAM.
INFO 2026-06-08 08:44:50 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 1s. Last read position: chr19:18,144,600
INFO 2026-06-08 08:44:50 MarkDuplicates Tracking 229435 as yet unmatched pairs. 63457 records in RAM.
INFO 2026-06-08 08:44:51 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr19:18,852,171
INFO 2026-06-08 08:44:51 MarkDuplicates Tracking 226200 as yet unmatched pairs. 60222 records in RAM.
INFO 2026-06-08 08:44:53 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr19:20,118,191
INFO 2026-06-08 08:44:53 MarkDuplicates Tracking 223399 as yet unmatched pairs. 57421 records in RAM.
INFO 2026-06-08 08:44:55 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr19:33,301,747
INFO 2026-06-08 08:44:55 MarkDuplicates Tracking 220881 as yet unmatched pairs. 54902 records in RAM.
INFO 2026-06-08 08:44:57 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 2s. Last read position: chr19:35,250,471
INFO 2026-06-08 08:44:57 MarkDuplicates Tracking 218404 as yet unmatched pairs. 52425 records in RAM.
INFO 2026-06-08 08:44:59 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chr19:36,102,014
INFO 2026-06-08 08:44:59 MarkDuplicates Tracking 214790 as yet unmatched pairs. 48811 records in RAM.
INFO 2026-06-08 08:45:00 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr19:38,717,197
INFO 2026-06-08 08:45:00 MarkDuplicates Tracking 212368 as yet unmatched pairs. 46389 records in RAM.
INFO 2026-06-08 08:45:02 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr19:39,433,284
INFO 2026-06-08 08:45:02 MarkDuplicates Tracking 212321 as yet unmatched pairs. 46341 records in RAM.
INFO 2026-06-08 08:45:03 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 1s. Last read position: chr19:40,365,892
INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 207638 as yet unmatched pairs. 41658 records in RAM.
INFO 2026-06-08 08:45:05 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr19:41,869,135
INFO 2026-06-08 08:45:05 MarkDuplicates Tracking 205030 as yet unmatched pairs. 39050 records in RAM.
INFO 2026-06-08 08:45:06 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr19:42,292,970
INFO 2026-06-08 08:45:06 MarkDuplicates Tracking 201234 as yet unmatched pairs. 35253 records in RAM.
INFO 2026-06-08 08:45:07 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr19:44,907,813
INFO 2026-06-08 08:45:07 MarkDuplicates Tracking 198855 as yet unmatched pairs. 32845 records in RAM.
INFO 2026-06-08 08:45:09 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr19:45,711,858
INFO 2026-06-08 08:45:09 MarkDuplicates Tracking 194611 as yet unmatched pairs. 28601 records in RAM.
INFO 2026-06-08 08:45:10 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr19:47,221,671
INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 191318 as yet unmatched pairs. 25308 records in RAM.
INFO 2026-06-08 08:45:12 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: chr19:48,629,075
INFO 2026-06-08 08:45:12 MarkDuplicates Tracking 189287 as yet unmatched pairs. 23277 records in RAM.
INFO 2026-06-08 08:45:13 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr19:49,211,535
INFO 2026-06-08 08:45:13 MarkDuplicates Tracking 185770 as yet unmatched pairs. 19760 records in RAM.
INFO 2026-06-08 08:45:15 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr19:49,652,235
INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 182835 as yet unmatched pairs. 16825 records in RAM.
INFO 2026-06-08 08:45:16 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr19:50,301,719
INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 179579 as yet unmatched pairs. 13569 records in RAM.
INFO 2026-06-08 08:45:18 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr19:53,004,553
INFO 2026-06-08 08:45:18 MarkDuplicates Tracking 176838 as yet unmatched pairs. 10827 records in RAM.
INFO 2026-06-08 08:45:20 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 2s. Last read position: chr19:54,458,456
INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 174357 as yet unmatched pairs. 8345 records in RAM.
INFO 2026-06-08 08:45:23 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 2s. Last read position: chr19:55,660,196
INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 171181 as yet unmatched pairs. 5169 records in RAM.
INFO 2026-06-08 08:45:24 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr19:58,246,609
INFO 2026-06-08 08:45:24 MarkDuplicates Tracking 168326 as yet unmatched pairs. 2314 records in RAM.
INFO 2026-06-08 08:45:25 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr20:1,164,477
INFO 2026-06-08 08:45:25 MarkDuplicates Tracking 165178 as yet unmatched pairs. 33788 records in RAM.
INFO 2026-06-08 08:45:27 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr20:3,760,082
INFO 2026-06-08 08:45:27 MarkDuplicates Tracking 162189 as yet unmatched pairs. 30799 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr20:17,635,600
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 159887 as yet unmatched pairs. 28494 records in RAM.
INFO 2026-06-08 08:45:30 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr20:25,217,536
INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 157129 as yet unmatched pairs. 25736 records in RAM.
INFO 2026-06-08 08:45:31 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr20:34,290,345
INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 155424 as yet unmatched pairs. 24030 records in RAM.
INFO 2026-06-08 08:45:33 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr20:35,697,775
INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 151833 as yet unmatched pairs. 20439 records in RAM.
INFO 2026-06-08 08:45:34 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr20:38,524,864
INFO 2026-06-08 08:45:34 MarkDuplicates Tracking 149133 as yet unmatched pairs. 17738 records in RAM.
INFO 2026-06-08 08:45:35 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr20:45,419,294
INFO 2026-06-08 08:45:35 MarkDuplicates Tracking 146688 as yet unmatched pairs. 15293 records in RAM.
INFO 2026-06-08 08:45:37 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr20:48,921,854
INFO 2026-06-08 08:45:37 MarkDuplicates Tracking 143769 as yet unmatched pairs. 12374 records in RAM.
INFO 2026-06-08 08:45:39 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr20:53,985,327
INFO 2026-06-08 08:45:39 MarkDuplicates Tracking 141133 as yet unmatched pairs. 9738 records in RAM.
INFO 2026-06-08 08:45:40 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr20:59,944,565
INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 138327 as yet unmatched pairs. 6909 records in RAM.
INFO 2026-06-08 08:45:43 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 2s. Last read position: chr20:62,813,225
INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 135247 as yet unmatched pairs. 3829 records in RAM.
INFO 2026-06-08 08:45:44 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr20:63,959,887
INFO 2026-06-08 08:45:44 MarkDuplicates Tracking 132170 as yet unmatched pairs. 751 records in RAM.
INFO 2026-06-08 08:45:46 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr21:8,213,632
INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 130375 as yet unmatched pairs. 24241 records in RAM.
INFO 2026-06-08 08:45:47 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,267
INFO 2026-06-08 08:45:47 MarkDuplicates Tracking 128739 as yet unmatched pairs. 22596 records in RAM.
INFO 2026-06-08 08:45:48 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 0s. Last read position: chr21:8,397,736
INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 128368 as yet unmatched pairs. 22222 records in RAM.
INFO 2026-06-08 08:45:49 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 0s. Last read position: chr21:8,441,948
INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 127964 as yet unmatched pairs. 21816 records in RAM.
INFO 2026-06-08 08:45:50 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 0s. Last read position: chr21:8,444,583
INFO 2026-06-08 08:45:50 MarkDuplicates Tracking 125656 as yet unmatched pairs. 19507 records in RAM.
INFO 2026-06-08 08:45:51 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr21:31,217,644
INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 123295 as yet unmatched pairs. 17146 records in RAM.
INFO 2026-06-08 08:45:53 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr21:33,584,642
INFO 2026-06-08 08:45:53 MarkDuplicates Tracking 120457 as yet unmatched pairs. 14308 records in RAM.
INFO 2026-06-08 08:45:54 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr21:39,276,213
INFO 2026-06-08 08:45:54 MarkDuplicates Tracking 117976 as yet unmatched pairs. 11827 records in RAM.
INFO 2026-06-08 08:45:55 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr21:42,566,921
INFO 2026-06-08 08:45:55 MarkDuplicates Tracking 115145 as yet unmatched pairs. 8996 records in RAM.
INFO 2026-06-08 08:45:57 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr21:44,225,123
INFO 2026-06-08 08:45:57 MarkDuplicates Tracking 112854 as yet unmatched pairs. 6705 records in RAM.
INFO 2026-06-08 08:45:58 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr21:45,987,014
INFO 2026-06-08 08:45:58 MarkDuplicates Tracking 109955 as yet unmatched pairs. 3804 records in RAM.
INFO 2026-06-08 08:46:00 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr21:46,416,537
INFO 2026-06-08 08:46:00 MarkDuplicates Tracking 106852 as yet unmatched pairs. 701 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 2s. Last read position: chr22:19,851,375
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 104053 as yet unmatched pairs. 48260 records in RAM.
INFO 2026-06-08 08:46:05 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 2s. Last read position: chr22:21,388,646
INFO 2026-06-08 08:46:05 MarkDuplicates Tracking 100653 as yet unmatched pairs. 44860 records in RAM.
INFO 2026-06-08 08:46:06 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr22:23,182,112
INFO 2026-06-08 08:46:06 MarkDuplicates Tracking 98714 as yet unmatched pairs. 42920 records in RAM.
INFO 2026-06-08 08:46:08 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr22:24,059,244
INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 95238 as yet unmatched pairs. 39443 records in RAM.
INFO 2026-06-08 08:46:10 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr22:28,796,135
INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 92782 as yet unmatched pairs. 36987 records in RAM.
INFO 2026-06-08 08:46:11 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr22:29,299,611
INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 91681 as yet unmatched pairs. 35886 records in RAM.
INFO 2026-06-08 08:46:13 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr22:30,337,062
INFO 2026-06-08 08:46:13 MarkDuplicates Tracking 86937 as yet unmatched pairs. 31142 records in RAM.
INFO 2026-06-08 08:46:14 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr22:32,475,057
INFO 2026-06-08 08:46:14 MarkDuplicates Tracking 84242 as yet unmatched pairs. 28447 records in RAM.
INFO 2026-06-08 08:46:16 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr22:36,299,006
INFO 2026-06-08 08:46:16 MarkDuplicates Tracking 81599 as yet unmatched pairs. 25804 records in RAM.
INFO 2026-06-08 08:46:17 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr22:37,614,190
INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 78321 as yet unmatched pairs. 22526 records in RAM.
INFO 2026-06-08 08:46:19 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr22:38,314,060
INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 75445 as yet unmatched pairs. 19650 records in RAM.
INFO 2026-06-08 08:46:20 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr22:39,521,818
INFO 2026-06-08 08:46:20 MarkDuplicates Tracking 74914 as yet unmatched pairs. 19119 records in RAM.
INFO 2026-06-08 08:46:22 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr22:41,178,592
INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 70039 as yet unmatched pairs. 14244 records in RAM.
INFO 2026-06-08 08:46:24 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 2s. Last read position: chr22:42,079,747
INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 67168 as yet unmatched pairs. 11373 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr22:45,503,038
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 65015 as yet unmatched pairs. 9220 records in RAM.
INFO 2026-06-08 08:46:27 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr22:50,158,056
INFO 2026-06-08 08:46:27 MarkDuplicates Tracking 61076 as yet unmatched pairs. 5281 records in RAM.
INFO 2026-06-08 08:46:29 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr22:50,466,237
INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 58129 as yet unmatched pairs. 2333 records in RAM.
INFO 2026-06-08 08:46:31 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chrX:3,310,497
INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 54723 as yet unmatched pairs. 34828 records in RAM.
INFO 2026-06-08 08:46:32 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chrX:23,713,146
INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 52309 as yet unmatched pairs. 32390 records in RAM.
INFO 2026-06-08 08:46:34 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chrX:41,216,527
INFO 2026-06-08 08:46:34 MarkDuplicates Tracking 49741 as yet unmatched pairs. 29819 records in RAM.
INFO 2026-06-08 08:46:35 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chrX:47,565,305
INFO 2026-06-08 08:46:35 MarkDuplicates Tracking 47425 as yet unmatched pairs. 27498 records in RAM.
INFO 2026-06-08 08:46:36 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chrX:49,174,413
INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 44682 as yet unmatched pairs. 24755 records in RAM.
INFO 2026-06-08 08:46:38 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chrX:53,561,775
INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 42270 as yet unmatched pairs. 22343 records in RAM.
INFO 2026-06-08 08:46:39 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chrX:69,161,819
INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 39517 as yet unmatched pairs. 19589 records in RAM.
INFO 2026-06-08 08:46:41 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chrX:72,656,132
INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 36936 as yet unmatched pairs. 17008 records in RAM.
INFO 2026-06-08 08:46:42 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chrX:80,930,301
INFO 2026-06-08 08:46:42 MarkDuplicates Tracking 34450 as yet unmatched pairs. 14522 records in RAM.
INFO 2026-06-08 08:46:43 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chrX:107,926,124
INFO 2026-06-08 08:46:43 MarkDuplicates Tracking 32200 as yet unmatched pairs. 12272 records in RAM.
INFO 2026-06-08 08:46:45 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chrX:123,668,176
INFO 2026-06-08 08:46:45 MarkDuplicates Tracking 30073 as yet unmatched pairs. 10145 records in RAM.
INFO 2026-06-08 08:46:47 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chrX:147,912,134
INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 27564 as yet unmatched pairs. 7636 records in RAM.
INFO 2026-06-08 08:46:48 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chrX:153,952,715
INFO 2026-06-08 08:46:48 MarkDuplicates Tracking 24781 as yet unmatched pairs. 4852 records in RAM.
INFO 2026-06-08 08:46:50 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chrX:154,428,818
INFO 2026-06-08 08:46:50 MarkDuplicates Tracking 21798 as yet unmatched pairs. 1869 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chrM:3,554
INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 19295 as yet unmatched pairs. 249 records in RAM.
INFO 2026-06-08 08:46:53 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,488
INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 19003 as yet unmatched pairs. 5173 records in RAM.
INFO 2026-06-08 08:46:54 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,136
INFO 2026-06-08 08:46:54 MarkDuplicates Tracking 14204 as yet unmatched pairs. 374 records in RAM.
INFO 2026-06-08 08:46:56 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: KI270733.1:122,815
INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 13788 as yet unmatched pairs. 13770 records in RAM.
INFO 2026-06-08 08:46:57 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: KI270733.1:132,435
INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 1460 as yet unmatched pairs. 1442 records in RAM.
INFO 2026-06-08 08:46:58 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,130
INFO 2026-06-08 08:46:58 MarkDuplicates Tracking 168 as yet unmatched pairs. 150 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 607623880 records. 0 pairs never matched.
INFO 2026-06-08 08:47:30 MarkDuplicates After buildSortedReadEndLists freeMemory: 204139960; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:47:30 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:47:35 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:47:35 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:47:57 OpticalDuplicateFinder Large duplicate set. size = 1082
INFO 2026-06-08 08:47:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,923
INFO 2026-06-08 08:47:57 OpticalDuplicateFinder Large duplicate set. size = 1216
INFO 2026-06-08 08:47:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,131
INFO 2026-06-08 08:47:57 OpticalDuplicateFinder Large duplicate set. size = 1011
INFO 2026-06-08 08:47:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,500
INFO 2026-06-08 08:47:57 OpticalDuplicateFinder Large duplicate set. size = 1339
INFO 2026-06-08 08:47:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,275
INFO 2026-06-08 08:48:03 OpticalDuplicateFinder Large duplicate set. size = 1539
INFO 2026-06-08 08:48:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,874
INFO 2026-06-08 08:48:04 OpticalDuplicateFinder Large duplicate set. size = 1020
INFO 2026-06-08 08:48:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,482
INFO 2026-06-08 08:48:16 OpticalDuplicateFinder Large duplicate set. size = 1087
INFO 2026-06-08 08:48:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,467
INFO 2026-06-08 08:48:16 OpticalDuplicateFinder Large duplicate set. size = 1142
INFO 2026-06-08 08:48:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,196
INFO 2026-06-08 08:48:16 OpticalDuplicateFinder Large duplicate set. size = 2930
INFO 2026-06-08 08:48:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,662
INFO 2026-06-08 08:48:16 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,209
INFO 2026-06-08 08:48:16 OpticalDuplicateFinder Large duplicate set. size = 1698
INFO 2026-06-08 08:48:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,323
INFO 2026-06-08 08:48:16 OpticalDuplicateFinder Large duplicate set. size = 1056
INFO 2026-06-08 08:48:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,676
INFO 2026-06-08 08:48:16 OpticalDuplicateFinder Large duplicate set. size = 1367
INFO 2026-06-08 08:48:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,782
INFO 2026-06-08 08:48:16 OpticalDuplicateFinder Large duplicate set. size = 1154
INFO 2026-06-08 08:48:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,249
INFO 2026-06-08 08:48:27 OpticalDuplicateFinder Large duplicate set. size = 1046
INFO 2026-06-08 08:48:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,047
INFO 2026-06-08 08:48:27 OpticalDuplicateFinder Large duplicate set. size = 1729
INFO 2026-06-08 08:48:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,928
INFO 2026-06-08 08:48:43 OpticalDuplicateFinder Large duplicate set. size = 1036
INFO 2026-06-08 08:48:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,495
INFO 2026-06-08 08:48:43 OpticalDuplicateFinder Large duplicate set. size = 1092
INFO 2026-06-08 08:48:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,349
INFO 2026-06-08 08:48:43 OpticalDuplicateFinder Large duplicate set. size = 1064
INFO 2026-06-08 08:48:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,120
INFO 2026-06-08 08:48:43 OpticalDuplicateFinder Large duplicate set. size = 1231
INFO 2026-06-08 08:48:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,503
INFO 2026-06-08 08:48:44 OpticalDuplicateFinder Large duplicate set. size = 1213
INFO 2026-06-08 08:48:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,134
INFO 2026-06-08 08:48:44 OpticalDuplicateFinder Large duplicate set. size = 1125
INFO 2026-06-08 08:48:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,200
INFO 2026-06-08 08:48:44 OpticalDuplicateFinder Large duplicate set. size = 1442
INFO 2026-06-08 08:48:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,284
INFO 2026-06-08 08:48:44 OpticalDuplicateFinder Large duplicate set. size = 1141
INFO 2026-06-08 08:48:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,857
INFO 2026-06-08 08:48:53 OpticalDuplicateFinder Large duplicate set. size = 1183
INFO 2026-06-08 08:48:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,071
INFO 2026-06-08 08:48:53 OpticalDuplicateFinder Large duplicate set. size = 1011
INFO 2026-06-08 08:48:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,949
INFO 2026-06-08 08:48:53 OpticalDuplicateFinder Large duplicate set. size = 1532
INFO 2026-06-08 08:48:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,597
INFO 2026-06-08 08:48:53 OpticalDuplicateFinder Large duplicate set. size = 1083
INFO 2026-06-08 08:48:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,619
INFO 2026-06-08 08:48:54 OpticalDuplicateFinder Large duplicate set. size = 1103
INFO 2026-06-08 08:48:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,109
INFO 2026-06-08 08:48:54 OpticalDuplicateFinder Large duplicate set. size = 1165
INFO 2026-06-08 08:48:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,513
INFO 2026-06-08 08:48:54 OpticalDuplicateFinder Large duplicate set. size = 1038
INFO 2026-06-08 08:48:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,352
INFO 2026-06-08 08:48:54 OpticalDuplicateFinder Large duplicate set. size = 1194
INFO 2026-06-08 08:48:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,481
INFO 2026-06-08 08:48:54 OpticalDuplicateFinder Large duplicate set. size = 1583
INFO 2026-06-08 08:48:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,029
INFO 2026-06-08 08:48:54 OpticalDuplicateFinder Large duplicate set. size = 1013
INFO 2026-06-08 08:48:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,550
INFO 2026-06-08 08:48:55 OpticalDuplicateFinder Large duplicate set. size = 1205
INFO 2026-06-08 08:48:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,805
INFO 2026-06-08 08:48:55 OpticalDuplicateFinder Large duplicate set. size = 1205
INFO 2026-06-08 08:48:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,606
INFO 2026-06-08 08:48:55 OpticalDuplicateFinder Large duplicate set. size = 2064
INFO 2026-06-08 08:48:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,189
INFO 2026-06-08 08:48:55 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,462
INFO 2026-06-08 08:48:55 OpticalDuplicateFinder Large duplicate set. size = 1583
INFO 2026-06-08 08:48:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,799
INFO 2026-06-08 08:48:55 OpticalDuplicateFinder Large duplicate set. size = 1096
INFO 2026-06-08 08:48:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,731
INFO 2026-06-08 08:48:55 OpticalDuplicateFinder Large duplicate set. size = 1264
INFO 2026-06-08 08:48:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,005
INFO 2026-06-08 08:48:55 OpticalDuplicateFinder Large duplicate set. size = 1114
INFO 2026-06-08 08:48:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,627
INFO 2026-06-08 08:48:55 OpticalDuplicateFinder Large duplicate set. size = 1116
INFO 2026-06-08 08:48:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,203
INFO 2026-06-08 08:48:55 OpticalDuplicateFinder Large duplicate set. size = 1523
INFO 2026-06-08 08:48:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,579
INFO 2026-06-08 08:48:55 OpticalDuplicateFinder Large duplicate set. size = 1043
INFO 2026-06-08 08:48:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,223
INFO 2026-06-08 08:48:55 OpticalDuplicateFinder Large duplicate set. size = 1073
INFO 2026-06-08 08:48:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,086
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1386
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,073
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1722
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,642
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1286
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,316
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1072
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,888
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 2234
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,784
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,120
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1047
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,668
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1085
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,208
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1065
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,173
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1021
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,125
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1091
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,199
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1306
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,257
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1176
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,330
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1259
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,123
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1641
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,718
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1126
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,752
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1420
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,061
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1041
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,423
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1629
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,707
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 2411
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,761
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,660
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1011
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,954
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1221
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,440
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 2117
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,637
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,920
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 2048
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,781
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,049
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 2111
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,623
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,063
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1336
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,233
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1447
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,785
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1105
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,144
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1065
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,291
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 2127
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,505
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,725
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 3321
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,268
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,599
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,361
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1131
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,924
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1023
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,207
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1627
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,033
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 2060
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,505
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,582
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1773
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,571
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1016
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,156
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1096
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,340
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1061
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,857
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 2220
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,133
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,177
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1011
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,083
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1242
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,207
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1142
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,547
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1335
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,358
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1086
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,423
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1389
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,198
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1807
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,016
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1021
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,108
INFO 2026-06-08 08:48:56 OpticalDuplicateFinder Large duplicate set. size = 1025
INFO 2026-06-08 08:48:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,762
INFO 2026-06-08 08:48:57 OpticalDuplicateFinder Large duplicate set. size = 1231
INFO 2026-06-08 08:48:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,549
INFO 2026-06-08 08:48:57 OpticalDuplicateFinder Large duplicate set. size = 2019
INFO 2026-06-08 08:48:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,411
INFO 2026-06-08 08:48:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,768
INFO 2026-06-08 08:48:57 OpticalDuplicateFinder Large duplicate set. size = 1047
INFO 2026-06-08 08:48:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,752
INFO 2026-06-08 08:48:57 OpticalDuplicateFinder Large duplicate set. size = 1110
INFO 2026-06-08 08:48:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,298
INFO 2026-06-08 08:48:57 OpticalDuplicateFinder Large duplicate set. size = 1133
INFO 2026-06-08 08:48:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,568
INFO 2026-06-08 08:48:57 OpticalDuplicateFinder Large duplicate set. size = 1542
INFO 2026-06-08 08:48:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,699
INFO 2026-06-08 08:49:14 OpticalDuplicateFinder Large duplicate set. size = 1036
INFO 2026-06-08 08:49:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,269
INFO 2026-06-08 08:49:14 OpticalDuplicateFinder Large duplicate set. size = 1019
INFO 2026-06-08 08:49:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,482
INFO 2026-06-08 08:49:14 OpticalDuplicateFinder Large duplicate set. size = 1308
INFO 2026-06-08 08:49:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,863
INFO 2026-06-08 08:49:14 OpticalDuplicateFinder Large duplicate set. size = 1167
INFO 2026-06-08 08:49:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,618
INFO 2026-06-08 08:49:14 OpticalDuplicateFinder Large duplicate set. size = 1036
INFO 2026-06-08 08:49:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,404
INFO 2026-06-08 08:49:14 OpticalDuplicateFinder Large duplicate set. size = 1204
INFO 2026-06-08 08:49:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,976
INFO 2026-06-08 08:49:14 OpticalDuplicateFinder Large duplicate set. size = 1101
INFO 2026-06-08 08:49:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,929
INFO 2026-06-08 08:49:14 OpticalDuplicateFinder Large duplicate set. size = 1140
INFO 2026-06-08 08:49:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,355
INFO 2026-06-08 08:49:14 OpticalDuplicateFinder Large duplicate set. size = 1257
INFO 2026-06-08 08:49:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,255
INFO 2026-06-08 08:49:14 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:49:14 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:50:13 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:50:21 MarkDuplicates After generateDuplicateIndexes freeMemory: 203904112; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:50:21 MarkDuplicates Marking 424211271 records as duplicates.
INFO 2026-06-08 08:50:21 MarkDuplicates Found 15544727 optical duplicate clusters.
INFO 2026-06-08 08:50:21 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:50:38 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:23,793,891
INFO 2026-06-08 08:50:55 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:33s. Time for last 10,000,000: 16s. Last read position: chr1:46,146,687
INFO 2026-06-08 08:51:11 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:49s. Time for last 10,000,000: 16s. Last read position: chr1:146,109,750
INFO 2026-06-08 08:51:27 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:05s. Time for last 10,000,000: 15s. Last read position: chr1:156,592,105
INFO 2026-06-08 08:51:43 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:21s. Time for last 10,000,000: 15s. Last read position: chr1:211,575,437
INFO 2026-06-08 08:51:59 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:37s. Time for last 10,000,000: 15s. Last read position: chr2:29,920,047
INFO 2026-06-08 08:52:14 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:53s. Time for last 10,000,000: 15s. Last read position: chr2:64,458,329
INFO 2026-06-08 08:52:30 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:09s. Time for last 10,000,000: 15s. Last read position: chr2:134,954,485
INFO 2026-06-08 08:52:46 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:25s. Time for last 10,000,000: 15s. Last read position: chr2:215,378,247
INFO 2026-06-08 08:53:02 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:40s. Time for last 10,000,000: 15s. Last read position: chr3:12,416,812
INFO 2026-06-08 08:53:18 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:57s. Time for last 10,000,000: 16s. Last read position: chr3:49,358,108
INFO 2026-06-08 08:53:34 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:13s. Time for last 10,000,000: 16s. Last read position: chr3:127,005,113
INFO 2026-06-08 08:53:51 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:29s. Time for last 10,000,000: 16s. Last read position: chr3:197,065,279
INFO 2026-06-08 08:54:07 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:46s. Time for last 10,000,000: 16s. Last read position: chr4:76,115,296
INFO 2026-06-08 08:54:23 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:02s. Time for last 10,000,000: 16s. Last read position: chr5:14,473,995
INFO 2026-06-08 08:54:39 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:18s. Time for last 10,000,000: 16s. Last read position: chr5:141,524,143
INFO 2026-06-08 08:54:55 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:34s. Time for last 10,000,000: 15s. Last read position: chr5:179,824,011
INFO 2026-06-08 08:55:11 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:50s. Time for last 10,000,000: 15s. Last read position: chr6:31,628,147
INFO 2026-06-08 08:55:27 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:05s. Time for last 10,000,000: 15s. Last read position: chr6:47,286,174
INFO 2026-06-08 08:55:43 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:21s. Time for last 10,000,000: 16s. Last read position: chr6:159,783,989
INFO 2026-06-08 08:55:59 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:37s. Time for last 10,000,000: 15s. Last read position: chr7:72,868,835
INFO 2026-06-08 08:56:14 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:53s. Time for last 10,000,000: 15s. Last read position: chr7:102,097,412
INFO 2026-06-08 08:56:30 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:09s. Time for last 10,000,000: 15s. Last read position: chr8:11,831,538
INFO 2026-06-08 08:56:46 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:25s. Time for last 10,000,000: 15s. Last read position: chr8:73,292,718
INFO 2026-06-08 08:57:02 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:41s. Time for last 10,000,000: 15s. Last read position: chr8:143,840,133
INFO 2026-06-08 08:57:17 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:56s. Time for last 10,000,000: 15s. Last read position: chr8:144,276,245
INFO 2026-06-08 08:57:33 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:12s. Time for last 10,000,000: 15s. Last read position: chr9:96,417,668
INFO 2026-06-08 08:57:49 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:27s. Time for last 10,000,000: 15s. Last read position: chr9:136,508,028
INFO 2026-06-08 08:58:05 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:43s. Time for last 10,000,000: 15s. Last read position: chr10:72,274,870
INFO 2026-06-08 08:58:21 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:59s. Time for last 10,000,000: 15s. Last read position: chr10:128,109,309
INFO 2026-06-08 08:58:36 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:15s. Time for last 10,000,000: 15s. Last read position: chr11:33,542,174
INFO 2026-06-08 08:58:52 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:31s. Time for last 10,000,000: 15s. Last read position: chr11:65,536,098
INFO 2026-06-08 08:59:08 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:46s. Time for last 10,000,000: 15s. Last read position: chr11:118,493,112
INFO 2026-06-08 08:59:24 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:02s. Time for last 10,000,000: 15s. Last read position: chr12:19,462,710
INFO 2026-06-08 08:59:39 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:18s. Time for last 10,000,000: 15s. Last read position: chr12:56,273,046
INFO 2026-06-08 08:59:55 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:33s. Time for last 10,000,000: 15s. Last read position: chr12:114,677,603
INFO 2026-06-08 09:00:11 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:49s. Time for last 10,000,000: 15s. Last read position: chr13:73,062,474
INFO 2026-06-08 09:00:26 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:05s. Time for last 10,000,000: 15s. Last read position: chr14:39,279,346
INFO 2026-06-08 09:00:42 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:21s. Time for last 10,000,000: 16s. Last read position: chr14:103,679,442
INFO 2026-06-08 09:00:58 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:36s. Time for last 10,000,000: 15s. Last read position: chr14:105,771,297
INFO 2026-06-08 09:01:14 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:52s. Time for last 10,000,000: 15s. Last read position: chr15:66,326,014
INFO 2026-06-08 09:01:30 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:08s. Time for last 10,000,000: 15s. Last read position: chr16:2,763,776
INFO 2026-06-08 09:01:45 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:24s. Time for last 10,000,000: 15s. Last read position: chr16:29,485,295
INFO 2026-06-08 09:02:01 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:40s. Time for last 10,000,000: 15s. Last read position: chr16:72,796,485
INFO 2026-06-08 09:02:17 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:11:55s. Time for last 10,000,000: 15s. Last read position: chr17:7,456,588
INFO 2026-06-08 09:02:33 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:11s. Time for last 10,000,000: 15s. Last read position: chr17:38,806,918
INFO 2026-06-08 09:02:48 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:27s. Time for last 10,000,000: 15s. Last read position: chr17:49,046,333
INFO 2026-06-08 09:03:04 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:42s. Time for last 10,000,000: 15s. Last read position: chr17:50,195,239
INFO 2026-06-08 09:03:20 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:12:58s. Time for last 10,000,000: 15s. Last read position: chr17:67,344,665
INFO 2026-06-08 09:03:35 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:14s. Time for last 10,000,000: 15s. Last read position: chr18:8,069,848
INFO 2026-06-08 09:03:52 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:30s. Time for last 10,000,000: 16s. Last read position: chr19:2,343,211
INFO 2026-06-08 09:04:07 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:46s. Time for last 10,000,000: 15s. Last read position: chr19:14,518,101
INFO 2026-06-08 09:04:23 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:02s. Time for last 10,000,000: 15s. Last read position: chr19:38,717,197
INFO 2026-06-08 09:04:38 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:17s. Time for last 10,000,000: 15s. Last read position: chr19:49,652,235
INFO 2026-06-08 09:04:54 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:33s. Time for last 10,000,000: 15s. Last read position: chr20:34,290,345
INFO 2026-06-08 09:05:10 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:14:48s. Time for last 10,000,000: 15s. Last read position: chr21:8,258,267
INFO 2026-06-08 09:05:25 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:04s. Time for last 10,000,000: 15s. Last read position: chr21:46,416,537
INFO 2026-06-08 09:05:41 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:20s. Time for last 10,000,000: 15s. Last read position: chr22:37,614,190
INFO 2026-06-08 09:05:57 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:35s. Time for last 10,000,000: 15s. Last read position: chrX:41,216,527
INFO 2026-06-08 09:06:13 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:15:51s. Time for last 10,000,000: 15s. Last read position: chrX:153,952,715
INFO 2026-06-08 09:06:29 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:08s. Time for last 10,000,000: 16s. Last read position: */*
INFO 2026-06-08 09:06:32 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:06:32 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:06:32 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:06:32 MarkDuplicates Before output close freeMemory: 203874696; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:06:32 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:06:32 MarkDuplicates After output close freeMemory: 104107880; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:06:32 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 39.45 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory