File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/bb51d592dbb3afbd1c2b4bb405f491/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (aih-tih-sc-20b7e4-R1_B23WHYVLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/013786bf60e48795a82bf865049234/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/bb51d592dbb3afbd1c2b4bb405f491/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/bb51d592dbb3afbd1c2b4bb405f491/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/a9dcb2751cb968ecf99ffcc4fef571/aih-tih-sc-20b7e4-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/a9d937bc1c6ec362de7939e3cc3670/aih-tih-sc-20b7e4-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 89540130
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-20b7e4-R1_B23WHYVLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	89540130
Known Splicing Events:	88600292
Partial Novel Splicing Events:	534157
Novel Splicing Events:	360813
Filtered Splicing Events:	44868

Total splicing  Junctions:	253075
Known Splicing Junctions:	193364
Partial Novel Splicing Junctions:	36138
Novel Splicing Junctions:	23573

===================================================================
Create BED file ...
Create Interact file ...