File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/a86dbefe2c2724e3ed2049d9a18af5/.command.log
Size
3.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-62dadb-R1_B23WHYVLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/f436a1ae645dc78adca16fb3fbd77d/aih-tih-sc-62dadb-R1_B23WHYVLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-8900cb43-4dca-49ac-a290-1d176a2e0012/bb/b9dd0d6df869a3d0edd9f161adc899/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/a86dbefe2c2724e3ed2049d9a18af5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/a86dbefe2c2724e3ed2049d9a18af5/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/d9c83fdeaf40b8c1884cafeb36055e/aih-tih-sc-62dadb-R1_B23WHYVLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
KDM1A--EPHB2
starfusion
arriba
DAG1--ACTR2
starfusion
arriba
TLK2P1--AC110079.1
starfusion
arriba
LRP1B--FAM178B
starfusion
arriba
LINC00511--BORCS5
starfusion
arriba
WWTR1--DPP10
starfusion
arriba
STX16--NPEPL1
arriba
CLPB--SHANK2
arriba
TVP23C--CDRT4
arriba
NPHP3--ACAD11
arriba
ASB1--AC079612.1
arriba
ASB1--AC079612.2
arriba

  0%|          | 0/12 [00:00<?, ?it/s]
Processing KDM1A--EPHB2:   0%|          | 0/12 [00:00<?, ?it/s]
Processing KDM1A--EPHB2:   8%|▊         | 1/12 [00:00<00:01,  9.23it/s]
Processing DAG1--ACTR2:   8%|▊         | 1/12 [00:00<00:01,  9.23it/s] 
Processing DAG1--ACTR2:  17%|█▋        | 2/12 [00:00<00:01,  9.42it/s]
Processing TLK2P1--AC110079.1:  17%|█▋        | 2/12 [00:00<00:01,  9.42it/s]
Processing TLK2P1--AC110079.1:  25%|██▌       | 3/12 [00:00<00:00,  9.40it/s]
Processing LRP1B--FAM178B:  25%|██▌       | 3/12 [00:00<00:00,  9.40it/s]    
Processing LRP1B--FAM178B:  33%|███▎      | 4/12 [00:00<00:00,  9.38it/s]
Processing LINC00511--BORCS5:  33%|███▎      | 4/12 [00:00<00:00,  9.38it/s]
Processing LINC00511--BORCS5:  42%|████▏     | 5/12 [00:00<00:00,  9.43it/s]
Processing WWTR1--DPP10:  42%|████▏     | 5/12 [00:00<00:00,  9.43it/s]     
Processing WWTR1--DPP10:  50%|█████     | 6/12 [00:00<00:00,  9.45it/s]
Processing STX16--NPEPL1:  50%|█████     | 6/12 [00:00<00:00,  9.45it/s]
Processing STX16--NPEPL1:  58%|█████▊    | 7/12 [00:00<00:00,  9.46it/s]
Processing CLPB--SHANK2:  58%|█████▊    | 7/12 [00:00<00:00,  9.46it/s] 
Processing CLPB--SHANK2:  67%|██████▋   | 8/12 [00:00<00:00,  9.48it/s]
Processing TVP23C--CDRT4:  67%|██████▋   | 8/12 [00:00<00:00,  9.48it/s]
Processing TVP23C--CDRT4:  75%|███████▌  | 9/12 [00:00<00:00,  9.49it/s]
Processing NPHP3--ACAD11:  75%|███████▌  | 9/12 [00:00<00:00,  9.49it/s]
Processing NPHP3--ACAD11:  83%|████████▎ | 10/12 [00:01<00:00,  9.49it/s]
Processing ASB1--AC079612.1:  83%|████████▎ | 10/12 [00:01<00:00,  9.49it/s]
Processing ASB1--AC079612.1:  92%|█████████▏| 11/12 [00:01<00:00,  9.48it/s]
Processing ASB1--AC079612.2:  92%|█████████▏| 11/12 [00:01<00:00,  9.48it/s]
Processing ASB1--AC079612.2: 100%|██████████| 12/12 [00:01<00:00,  9.48it/s]
Processing ASB1--AC079612.2: 100%|██████████| 12/12 [00:01<00:00,  9.45it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory