File Info
- Filename
- aih-tih-sc-62dadb-R1_B23WHYVLT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/a86dbefe2c2724e3ed2049d9a18af5/aih-tih-sc-62dadb-R1_B23WHYVLT4_1.fusions.csv
- Size
- 3.5 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-62dadb-R1_B23WHYVLT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| KDM1A--EPHB2 | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr1:23044486#chr1:22863037,reading-frame: in-frame,type: duplication,split_reads1: 20,split_reads2: 13,discordant_mates: 1,coverage1: 411,coverage2: 176,confidence: high | position: chr1:23044486:+#chr1:22863037:+,junction_reads: 34,spanning_reads: 1,ffmp: 0.3895 |
| DAG1--ACTR2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr3:49510819#chr2:65239852,reading-frame: in-frame,type: translocation,split_reads1: 9,split_reads2: 3,discordant_mates: 0,coverage1: 315,coverage2: 2207,confidence: high | position: chr3:49510819:+#chr2:65239852:+,junction_reads: 15,spanning_reads: 0,ffmp: 0.1669 | |
| TLK2P1--AC110079.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:34039043#chr4:118595912,reading-frame: .,type: translocation,split_reads1: 8,split_reads2: 2,discordant_mates: 0,coverage1: 412,coverage2: 250,confidence: high | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 14,spanning_reads: 0,ffmp: 0.1547 | |
| LRP1B--FAM178B | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr2:142130648#chr2:96951484,reading-frame: out-of-frame,type: deletion,split_reads1: 6,split_reads2: 4,discordant_mates: 0,coverage1: 3328,coverage2: 42,confidence: high | position: chr2:142130648:-#chr2:96951484:-,junction_reads: 10,spanning_reads: 0,ffmp: 0.1113 | |
| LINC00511--BORCS5 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr17:72592203#chr12:12435628,reading-frame: .,type: translocation,split_reads1: 1,split_reads2: 9,discordant_mates: 0,coverage1: 1,coverage2: 164,confidence: high | position: chr17:72592203:-#chr12:12435628:+,junction_reads: 10,spanning_reads: 0,ffmp: 0.1113 | |
| WWTR1--DPP10 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr3:149572864#chr2:115727816,reading-frame: out-of-frame,type: translocation,split_reads1: 5,split_reads2: 4,discordant_mates: 0,coverage1: 3357,coverage2: 28,confidence: high | position: chr3:149572864:-#chr2:115727816:+,junction_reads: 9,spanning_reads: 0,ffmp: 0.1002 | |
| STX16--NPEPL1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 24,split_reads2: 26,discordant_mates: 0,coverage1: 1520,coverage2: 255,confidence: high | ||
| CLPB--SHANK2 | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr11:72329707#chr11:70807171,reading-frame: out-of-frame,type: deletion,split_reads1: 13,split_reads2: 20,discordant_mates: 0,coverage1: 151,coverage2: 425,confidence: high | |
| TVP23C--CDRT4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 10,split_reads2: 16,discordant_mates: 0,coverage1: 363,coverage2: 118,confidence: high | |
| NPHP3--ACAD11 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr3:132681914#chr3:132644896,reading-frame: in-frame,type: deletion/read-through,split_reads1: 7,split_reads2: 5,discordant_mates: 0,coverage1: 238,coverage2: 406,confidence: high | ||
| ASB1--AC079612.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:238427119#chr2:239606258,reading-frame: out-of-frame,type: inversion,split_reads1: 1,split_reads2: 7,discordant_mates: 0,coverage1: 169,coverage2: 15,confidence: high | ||
| ASB1--AC079612.2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr2:238427119#chr2:239606258,reading-frame: out-of-frame,type: inversion,split_reads1: 1,split_reads2: 7,discordant_mates: 0,coverage1: 169,coverage2: 15,confidence: high |
13 rows