File Info

Filename
aih-tih-sc-7c6c07-R1_B23WHYVLT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/bf9f9b2dc57aaf99a96eb6c9ac3ea1/aih-tih-sc-7c6c07-R1_B23WHYVLT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:39:43
                             Started mapping on |	Jun 08 07:41:43
                                    Finished on |	Jun 08 08:39:03
       Mapping speed, Million of reads per hour |	308.88

                          Number of input reads |	295151796
                      Average input read length |	255
                                    UNIQUE READS:
                   Uniquely mapped reads number |	280278954
                        Uniquely mapped reads % |	94.96%
                          Average mapped length |	254.70
                       Number of splices: Total |	318498060
            Number of splices: Annotated (sjdb) |	314529085
                       Number of splices: GT/AG |	315405320
                       Number of splices: GC/AG |	2179595
                       Number of splices: AT/AC |	305360
               Number of splices: Non-canonical |	607785
                      Mismatch rate per base, % |	0.21%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.06
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.88
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	9176542
             % of reads mapped to multiple loci |	3.11%
        Number of reads mapped to too many loci |	241693
             % of reads mapped to too many loci |	0.08%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	393786
       % of reads unmapped: too many mismatches |	0.13%
            Number of reads unmapped: too short |	3116893
                 % of reads unmapped: too short |	1.06%
                Number of reads unmapped: other |	239299
                     % of reads unmapped: other |	0.08%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3984754
                            % of chimeric reads |	1.35%